Start of Pipeline - (36 min in block)
node - (36 min in block)
node block - (36 min in block)
stage - (0.79 sec in block) Declarative: Checkout SCM
stage block (Declarative: Checkout SCM) - (0.63 sec in block)
checkout - (0.54 sec in self)
withEnv - (36 min in block) GIT_BRANCH, GIT_COMMIT, GIT_PREVIOUS_COMMIT, GIT_PREVIOUS_SUCCESSFUL_COMMIT, GIT_URL
withEnv block - (36 min in block)
withEnv - (36 min in block) commit, branch
withEnv block - (36 min in block)
stage - (18 sec in block) Checkout Externals and Copy Custom Files
stage block (Checkout Externals and Copy Custom Files) - (18 sec in block)
sh - (18 sec in self) python run_scripts/set_up_repo.py .
stage - (0.85 sec in block) Sed Commands
stage block (Sed Commands) - (0.72 sec in block)
sh - (0.33 sec in self) sed -i 's/COMPILER=.*/COMPILER="intel"/g' run_scripts/run_scam.bash
sh - (0.32 sec in self) sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash
stage - (1.2 sec in block) Remove Old Output
stage block (Remove Old Output) - (1.1 sec in block)
sh - (0.57 sec in self) rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX /home/jenkins/cam_output/scratch/test_scam_ARM97
script - (0.45 sec in block)
script block - (0.37 sec in block)
sh - (0.31 sec in self) rm -rf /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ARM97
stage - (15 min in block) Run ATEX
stage block (Run ATEX) - (15 min in block)
sh - (15 min in self) source /etc/profile.d/larson-group.sh
run_scripts/run_scam.bash ATEX
stage - (19 min in block) Run ARM97 with SILHS
stage block (Run ARM97 with SILHS) - (19 min in block)
sh - (19 min in self) source /etc/profile.d/larson-group.sh
# ulimit line is here so that we can override the default stack limit so that the program can write larger files properly
ulimit -s 8388608
run_scripts/run_scam.bash -s ARM97
stage - (1 min 30 sec in block) Compile and Run CLUBB
stage block (Compile and Run CLUBB) - (1 min 30 sec in block)
sh - (1 min 30 sec in self) source /etc/profile.d/larson-group.sh
module load intel netcdf-fortran
rm -rf clubb; git clone https://github.com/larson-group/clubb
clubb/compile/compile.bash -c config/linux_x86_64_ifort.bash
clubb/run_scripts/run_scm.bash atex
mv clubb/output CLUBB
stage - (15 sec in block) Plot
stage block (Plot) - (15 sec in block)
sh - (0.34 sec in self) mkdir CAM_CLUBB
sh - (0.33 sec in self) mv /home/jenkins/cam_output/scratch/test_scam_ATEX/run/*.cam.h0i.* CAM_CLUBB/atex_cam.nc
sh - (12 sec in self) clubb/postprocessing/pyplotgen/pyplotgen.py -r -l --cam CAM_CLUBB --clubb CLUBB -o ${commit}
sh - (0.87 sec in self) ssh carson 'mkdir -p /home/pub/cam_clubb_plots/ticket_1174_jenkins_test'
sh - (0.55 sec in self) scp -r b36e45c carson:/home/pub/cam_clubb_plots/ticket_1174_jenkins_test
sh - (0.56 sec in self) ssh carson '/home/pub/generate_plot_directory_page.py /home/pub/cam_clubb_plots/'
stage - (3.9 sec in block) Declarative: Post Actions
stage block (Declarative: Post Actions) - (3.8 sec in block)
script - (3.7 sec in block)
script block - (3.6 sec in block)
sh - (0.34 sec in self) chmod -R 755 /home/jenkins/cam_output/
sh - (0.54 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.*
sh - (0.34 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.*
sh - (0.37 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm.log.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm.log.*
sh - (0.33 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*
sh - (0.47 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.*
sh - (0.33 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.*
sh - (0.51 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm.log.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm.log.*
sh - (0.31 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_ARM97/run/cesm.log.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_ARM97/run/cesm.log.*