Start of Pipeline - (24 min in block)
node - (24 min in block)
node block - (24 min in block)
stage - (8.4 sec in block) Declarative: Checkout SCM
stage block (Declarative: Checkout SCM) - (8.3 sec in block)
checkout - (8.2 sec in self)
withEnv - (24 min in block) GIT_BRANCH, GIT_COMMIT, GIT_PREVIOUS_COMMIT, GIT_PREVIOUS_SUCCESSFUL_COMMIT, GIT_URL
withEnv block - (24 min in block)
withEnv - (24 min in block) commit, branch
withEnv block - (24 min in block)
stage - (1 min 22 sec in block) Checkout Externals and Copy Custom Files
stage block (Checkout Externals and Copy Custom Files) - (1 min 21 sec in block)
sh - (1 min 21 sec in self) python run_scripts/set_up_cam_coarse_res.py .
stage - (0.91 sec in block) Sed Commands
stage block (Sed Commands) - (0.77 sec in block)
sh - (0.36 sec in self) sed -i 's/COMPILER=.*/COMPILER="intel"/g' run_scripts/run_scam.bash
sh - (0.34 sec in self) sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash
stage - (0.73 sec in block) Remove Old Output
stage block (Remove Old Output) - (0.59 sec in block)
sh - (0.35 sec in self) rm -rf /home/jenkins/cam_output/scratch/test_scam_atex /home/jenkins/cam_output/scratch/test_scam_arm97
script - (0.13 sec in block)
script block - (51 ms in block)
stage - (9 min 50 sec in block) Run atex
stage block (Run atex) - (9 min 50 sec in block)
sh - (9 min 49 sec in self) source /etc/profile.d/larson-group.sh
run_scripts/run_scam.bash atex
stage - (11 min in block) Run arm97 with SILHS
stage block (Run arm97 with SILHS) - (11 min in block)
sh - (11 min in self) source /etc/profile.d/larson-group.sh
# ulimit line is here so that we can override the default stack limit so that the program can write larger files properly
ulimit -s 8388608
run_scripts/run_scam.bash -s arm97
stage - (1 min 11 sec in block) Compile and Run CLUBB
stage block (Compile and Run CLUBB) - (1 min 11 sec in block)
sh - (1 min 11 sec in self) source /etc/profile.d/larson-group.sh
module load intel netcdf-fortran
rm -rf clubb; git clone https://github.com/larson-group/clubb
clubb/compile/compile.bash -c config/linux_x86_64_ifort.bash
clubb/run_scripts/run_scm.bash atex
mv clubb/output CLUBB
stage - (13 sec in block) Plot
stage block (Plot) - (13 sec in block)
sh - (0.39 sec in self) mkdir CAM_CLUBB
sh - (0.38 sec in self) mv /home/jenkins/cam_output/scratch/test_scam_atex/run/*.cam.h0i.* CAM_CLUBB/atex_cam.nc
sh - (10 sec in self) clubb/postprocessing/pyplotgen/pyplotgen.py -r -l --cam CAM_CLUBB --clubb CLUBB -o ${commit}
sh - (0.93 sec in self) ssh carson 'mkdir -p /home/pub/cam_clubb_plots/clubb_silhs_devel'
sh - (0.61 sec in self) scp -r aafc530 carson:/home/pub/cam_clubb_plots/clubb_silhs_devel
sh - (0.65 sec in self) ssh carson '/home/pub/generate_plot_directory_page.py /home/pub/cam_clubb_plots/'
stage - (4.7 sec in block) Declarative: Post Actions
stage block (Declarative: Post Actions) - (4.6 sec in block)
script - (4.4 sec in block)
script block - (4.3 sec in block)
cleanWs - (0.12 sec in self)
sh - (0.37 sec in self) chmod -R 755 /home/jenkins/cam_output/
sh - (0.6 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*
sh - (0.4 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_atex/bld/cesm.bldlog.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_atex/bld/cesm.bldlog.*
sh - (0.45 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_atex/run/atm.log.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_atex/run/atm.log.*
sh - (0.37 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_atex/run/cesm.log.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_atex/run/cesm.log.*
sh - (0.61 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*
sh - (0.4 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_arm97/bld/cesm.bldlog.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_arm97/bld/cesm.bldlog.*
sh - (0.52 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_arm97/run/atm.log.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_arm97/run/atm.log.*
sh - (0.35 sec in self) gzip -d /home/jenkins/cam_output/scratch/test_scam_arm97/run/cesm.log.*.gz
cat /home/jenkins/cam_output/scratch/test_scam_arm97/run/cesm.log.*