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Started by an SCM change Obtained jenkins_tests/clubb_BFB_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on nelson in /home/jenkins/workspace/clubb_BFB_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision de8bbefe59ca054f99b8f487c51d788558213a12 (refs/remotes/origin/master) > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f de8bbefe59ca054f99b8f487c51d788558213a12 # timeout=10 Commit message: "Making clubb_at_least_debug_level not a device routine. It confuses the poor little nvidia compiler when compiling inside cam. Also making the compile script a little more robust." > git rev-list --no-walk 50a5528a55591d69e8b704dccebe1e7d6baa2669 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_gfortran_test_config Directory 1 is de8bbefe59ca054f99b8f487c51d788558213a12 Directory 2 is ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara'] ###DIFFING arm netCDF (*.nc) files### >The linux diff detected differences in arm_zm.nc< >>No differences detected in the common fields in file arm_zm.nc<< >The linux diff detected differences in arm_zt.nc< >>No differences detected in the common fields in file arm_zt.nc<< >The linux diff detected differences in arm_sfc.nc< >>No differences detected in the common fields in file arm_sfc.nc<< >>>Differences in linux diff but no differences in common variables detected for case arm.<<< ********************************************************************************************************** ###DIFFING arm_97 netCDF (*.nc) files### >The linux diff detected differences in arm_97_zm.nc< >>No differences detected in the common fields in file arm_97_zm.nc<< >The linux diff detected differences in arm_97_zt.nc< >>No differences detected in the common fields in file arm_97_zt.nc<< >The linux diff detected differences in arm_97_sfc.nc< >>No differences detected in the common fields in file arm_97_sfc.nc<< >>>Differences in linux diff but no differences in common variables detected for case arm_97.<<< ********************************************************************************************************** ###DIFFING atex netCDF (*.nc) files### >The linux diff detected differences in atex_zm.nc< >>No differences detected in the common fields in file atex_zm.nc<< >The linux diff detected differences in atex_zt.nc< >>No differences detected in the common fields in file atex_zt.nc<< >The linux diff detected differences in atex_sfc.nc< >>No differences detected in the common fields in file atex_sfc.nc<< >>>Differences in linux diff but no differences in common variables detected for case atex.<<< ********************************************************************************************************** ###DIFFING bomex netCDF (*.nc) files### >The linux diff detected differences in bomex_zm.nc< >>No differences detected in the common fields in file bomex_zm.nc<< >The linux diff detected differences in bomex_zt.nc< >>No differences detected in the common fields in file bomex_zt.nc<< >The linux diff detected differences in bomex_sfc.nc< >>No differences detected in the common fields in file bomex_sfc.nc<< >>>Differences in linux diff but no differences in common variables detected for case bomex.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf01_zm.nc< >>No differences detected in the common fields in file dycoms2_rf01_zm.nc<< >The linux diff detected differences in dycoms2_rf01_zt.nc< >>No differences detected in the common fields in file dycoms2_rf01_zt.nc<< >The linux diff detected differences in dycoms2_rf01_sfc.nc< >>No differences detected in the common fields in file dycoms2_rf01_sfc.nc<< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf01.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf02_ds netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf02_ds_zm.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_zm.nc<< >The linux diff detected differences in dycoms2_rf02_ds_zt.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_zt.nc<< >The linux diff detected differences in dycoms2_rf02_ds_sfc.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_sfc.nc<< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf02_ds.<<< ********************************************************************************************************** ###DIFFING gabls3_night netCDF (*.nc) files### >The linux diff detected differences in gabls3_night_zm.nc< >>No differences detected in the common fields in file gabls3_night_zm.nc<< >The linux diff detected differences in gabls3_night_zt.nc< >>No differences detected in the common fields in file gabls3_night_zt.nc<< >The linux diff detected differences in gabls3_night_sfc.nc< >>No differences detected in the common fields in file gabls3_night_sfc.nc<< >>>Differences in linux diff but no differences in common variables detected for case gabls3_night.<<< ********************************************************************************************************** ###DIFFING lba netCDF (*.nc) files### >The linux diff detected differences in lba_zm.nc< >>No differences detected in the common fields in file lba_zm.nc<< >The linux diff detected differences in lba_zt.nc< >>No differences detected in the common fields in file lba_zt.nc<< >The linux diff detected differences in lba_sfc.nc< >>No differences detected in the common fields in file lba_sfc.nc<< >>>Differences in linux diff but no differences in common variables detected for case lba.<<< ********************************************************************************************************** ###DIFFING rico netCDF (*.nc) files### >The linux diff detected differences in rico_zm.nc< >>No differences detected in the common fields in file rico_zm.nc<< >The linux diff detected differences in rico_zt.nc< >>No differences detected in the common fields in file rico_zt.nc<< >The linux diff detected differences in rico_sfc.nc< >>No differences detected in the common fields in file rico_sfc.nc<< >>>Differences in linux diff but no differences in common variables detected for case rico.<<< ********************************************************************************************************** ###DIFFING twp_ice netCDF (*.nc) files### >The linux diff detected differences in twp_ice_zm.nc< >>No differences detected in the common fields in file twp_ice_zm.nc<< >The linux diff detected differences in twp_ice_zt.nc< >>No differences detected in the common fields in file twp_ice_zt.nc<< >The linux diff detected differences in twp_ice_sfc.nc< >>No differences detected in the common fields in file twp_ice_sfc.nc<< >>>Differences in linux diff but no differences in common variables detected for case twp_ice.<<< ********************************************************************************************************** ###DIFFING wangara netCDF (*.nc) files### >The linux diff detected differences in wangara_zm.nc< >>No differences detected in the common fields in file wangara_zm.nc<< >The linux diff detected differences in wangara_zt.nc< >>No differences detected in the common fields in file wangara_zt.nc<< >The linux diff detected differences in wangara_sfc.nc< >>No differences detected in the common fields in file wangara_sfc.nc<< >>>Differences in linux diff but no differences in common variables detected for case wangara.<<< ********************************************************************************************************** SUMMARY: Differences detected by linux diff but no differences in the common variables of the netCDF files compared. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_gfortran_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_gfortran_test Using /home/jenkins/workspace/clubb_BFB_gfortran_test with origin https://github.com/larson-group/clubb.git Output Save Mode: none Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm_all.py -min_cases'] Diffing command: run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: 665f3896481654acdb49de9afae25d7a9b24a81c Parsing message from commit: f3de007e9528afc6cc2d71090bce5c6c53337152 Parsing message from commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669 Parsing message from commit: de8bbefe59ca054f99b8f487c51d788558213a12 Checking Commit: 665f3896481654acdb49de9afae25d7a9b24a81c Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: f3de007e9528afc6cc2d71090bce5c6c53337152 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: de8bbefe59ca054f99b8f487c51d788558213a12 Running: final commit to check, not labelled BIT_CHANGING Checking out de8bbefe59ca054f99b8f487c51d788558213a12 Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm_all.py -min_cases' Checking out ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm_all.py -min_cases' Diffing: 'run_scripts/run_bindiff_all.py de8bbefe59ca054f99b8f487c51d788558213a12 ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f' =============================== Test Results =============================== Commit Range Checked = ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f...de8bbefe59ca054f99b8f487c51d788558213a12 No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: de8bbefe59ca054f99b8f487c51d788558213a12 =============================== Cleanup =============================== Removing all generated output REMOVING: ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f REMOVING: de8bbefe59ca054f99b8f487c51d788558213a12 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS