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Started by an SCM change Obtained jenkins_tests/clubb_BFB_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on malan in /home/jenkins/workspace/clubb_BFB_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.30.2' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 7641404dd67426fd141ddffd90000abb5a58520e (refs/remotes/origin/master) Commit message: "I forgot to add the new variable to the Atlantic Coast Conference statements in the previous commit." > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 7641404dd67426fd141ddffd90000abb5a58520e # timeout=10 > git rev-list --no-walk 373be4b540b7491d836fb01e39d2d8351fb29365 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull hint: Pulling without specifying how to reconcile divergent branches is hint: discouraged. You can squelch this message by running one of the following hint: commands sometime before your next pull: hint: hint: git config pull.rebase false # merge (the default strategy) hint: git config pull.rebase true # rebase hint: git config pull.ff only # fast-forward only hint: hint: You can replace "git config" with "git config --global" to set a default hint: preference for all repositories. You can also pass --rebase, --no-rebase, hint: or --ff-only on the command line to override the configured default per hint: invocation. Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop21-skylake_avx512/gcc-12.2.0/lmod-8.7.37-d6vyrvvncsuguygovgvimahv5kfyaunp/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-eheq3uy (required by: mpich/4.2.1, hdf5/1.14.3-2o6xqva, netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.33-3y65nib (required by: mpich/4.2.1, hdf5/1.14.3-2o6xqva, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_gfortran_test_config .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../lib/libclubb_gfdlact.a /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/grid_class.F90:2336:8: 2336 | use constants_clubb, only: & | 1 Warning: Unused parameter 'one' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/grid_class.F90:1994:8: 1994 | use constants_clubb, only: & | 1 Warning: Unused parameter 'one' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/mono_flux_limiter.F90:456:9: 456 | tmp, & | 1 Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1040:63: 1040 | rcm_in_layer, cloud_cover, w_up_in_cloud, w_down_in_cloud, & | 1 Warning: Unused dummy argument 'cloud_cover' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1041:80: 1041 | cloudy_updraft_frac, cloudy_downdraft_frac, wprcp, & | 1 Warning: Unused dummy argument 'cloudy_downdraft_frac' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1041:57: 1041 | cloudy_updraft_frac, cloudy_downdraft_frac, wprcp, & | 1 Warning: Unused dummy argument 'cloudy_updraft_frac' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1039:93: 1039 | wp2vp2, um_pert, vm_pert, upwp_pert, vpwp_pert, edsclrm, & | 1 Warning: Unused dummy argument 'edsclrm' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1036:52: 1036 | p_in_Pa, exner, rcm, cloud_frac, wp2thvp, wpthvp, rtpthvp, & | 1 Warning: Unused dummy argument 'exner' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1038:55: 1038 | ice_supersat_frac, uprcp, vprcp, rc_coef_zm, wp4, wp2up2, & | 1 Warning: Unused dummy argument 'ice_supersat_frac' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1042:50: 1042 | invrs_tau_zm, Kh_zt, Kh_zm, thlprcp ) | 1 Warning: Unused dummy argument 'invrs_tau_zm' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1042:64: 1042 | invrs_tau_zm, Kh_zt, Kh_zm, thlprcp ) | 1 Warning: Unused dummy argument 'kh_zm' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1042:57: 1042 | invrs_tau_zm, Kh_zt, Kh_zm, thlprcp ) | 1 Warning: Unused dummy argument 'kh_zt' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1223:22: 1223 | integer :: i, k, n, status | 1 Warning: Unused variable 'n' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1060:8: 1060 | use netcdf, only: & | 1 Warning: Unused parameter 'nf90_noerr' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1060:8: 1060 | use netcdf, only: & | 1 Warning: Unused parameter 'nf90_write' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1036:45: 1036 | p_in_Pa, exner, rcm, cloud_frac, wp2thvp, wpthvp, rtpthvp, & | 1 Warning: Unused dummy argument 'p_in_pa' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1038:81: 1038 | ice_supersat_frac, uprcp, vprcp, rc_coef_zm, wp4, wp2up2, & | 1 Warning: Unused dummy argument 'rc_coef_zm' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1040:50: 1040 | rcm_in_layer, cloud_cover, w_up_in_cloud, w_down_in_cloud, & | 1 Warning: Unused dummy argument 'rcm_in_layer' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1033:71: 1033 | um, vm, up3, vp3, rtm, thlm, rtp3, thlp3, wp3, upwp, vpwp, & | 1 Warning: Unused dummy argument 'rtp3' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1036:95: 1036 | p_in_Pa, exner, rcm, cloud_frac, wp2thvp, wpthvp, rtpthvp, & | 1 Warning: Unused dummy argument 'rtpthvp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1035:43: 1035 | sclrm, sclrp3, wpsclrp, sclrp2, sclrprtp, sclrpthlp, & | 1 Warning: Unused dummy argument 'sclrm' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1035:68: 1035 | sclrm, sclrp3, wpsclrp, sclrp2, sclrprtp, sclrpthlp, & | 1 Warning: Unused dummy argument 'sclrp2' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1035:51: 1035 | sclrm, sclrp3, wpsclrp, sclrp2, sclrprtp, sclrpthlp, & | 1 Warning: Unused dummy argument 'sclrp3' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1035:78: 1035 | sclrm, sclrp3, wpsclrp, sclrp2, sclrprtp, sclrpthlp, & | 1 Warning: Unused dummy argument 'sclrprtp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1035:89: 1035 | sclrm, sclrp3, wpsclrp, sclrp2, sclrprtp, sclrpthlp, & | 1 Warning: Unused dummy argument 'sclrpthlp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1037:57: 1037 | thlpthvp, sclrpthvp, wp2rtp, wp2thlp, wpup2, wpvp2, & | 1 Warning: Unused dummy argument 'sclrpthvp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1033:78: 1033 | um, vm, up3, vp3, rtm, thlm, rtp3, thlp3, wp3, upwp, vpwp, & | 1 Warning: Unused dummy argument 'thlp3' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1042:73: 1042 | invrs_tau_zm, Kh_zt, Kh_zm, thlprcp ) | 1 Warning: Unused dummy argument 'thlprcp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1037:46: 1037 | thlpthvp, sclrpthvp, wp2rtp, wp2thlp, wpup2, wpvp2, & | 1 Warning: Unused dummy argument 'thlpthvp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1033:40: 1033 | um, vm, up3, vp3, rtm, thlm, rtp3, thlp3, wp3, upwp, vpwp, & | 1 Warning: Unused dummy argument 'um' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1039:53: 1039 | wp2vp2, um_pert, vm_pert, upwp_pert, vpwp_pert, edsclrm, & | 1 Warning: Unused dummy argument 'um_pert' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1033:49: 1033 | um, vm, up3, vp3, rtm, thlm, rtp3, thlp3, wp3, upwp, vpwp, & | 1 Warning: Unused dummy argument 'up3' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1038:62: 1038 | ice_supersat_frac, uprcp, vprcp, rc_coef_zm, wp4, wp2up2, & | 1 Warning: Unused dummy argument 'uprcp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1039:73: 1039 | wp2vp2, um_pert, vm_pert, upwp_pert, vpwp_pert, edsclrm, & | 1 Warning: Unused dummy argument 'upwp_pert' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1033:44: 1033 | um, vm, up3, vp3, rtm, thlm, rtp3, thlp3, wp3, upwp, vpwp, & | 1 Warning: Unused dummy argument 'vm' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1039:62: 1039 | wp2vp2, um_pert, vm_pert, upwp_pert, vpwp_pert, edsclrm, & | 1 Warning: Unused dummy argument 'vm_pert' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1033:54: 1033 | um, vm, up3, vp3, rtm, thlm, rtp3, thlp3, wp3, upwp, vpwp, & | 1 Warning: Unused dummy argument 'vp3' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1038:69: 1038 | ice_supersat_frac, uprcp, vprcp, rc_coef_zm, wp4, wp2up2, & | 1 Warning: Unused dummy argument 'vprcp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1039:84: 1039 | wp2vp2, um_pert, vm_pert, upwp_pert, vpwp_pert, edsclrm, & | 1 Warning: Unused dummy argument 'vpwp_pert' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1040:95: 1040 | rcm_in_layer, cloud_cover, w_up_in_cloud, w_down_in_cloud, & | 1 Warning: Unused dummy argument 'w_down_in_cloud' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1040:78: 1040 | rcm_in_layer, cloud_cover, w_up_in_cloud, w_down_in_cloud, & | 1 Warning: Unused dummy argument 'w_up_in_cloud' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1037:65: 1037 | thlpthvp, sclrpthvp, wp2rtp, wp2thlp, wpup2, wpvp2, & | 1 Warning: Unused dummy argument 'wp2rtp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1037:74: 1037 | thlpthvp, sclrpthvp, wp2rtp, wp2thlp, wpup2, wpvp2, & | 1 Warning: Unused dummy argument 'wp2thlp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1036:78: 1036 | p_in_Pa, exner, rcm, cloud_frac, wp2thvp, wpthvp, rtpthvp, & | 1 Warning: Unused dummy argument 'wp2thvp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1038:94: 1038 | ice_supersat_frac, uprcp, vprcp, rc_coef_zm, wp4, wp2up2, & | 1 Warning: Unused dummy argument 'wp2up2' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1039:44: 1039 | wp2vp2, um_pert, vm_pert, upwp_pert, vpwp_pert, edsclrm, & | 1 Warning: Unused dummy argument 'wp2vp2' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1038:86: 1038 | ice_supersat_frac, uprcp, vprcp, rc_coef_zm, wp4, wp2up2, & | 1 Warning: Unused dummy argument 'wp4' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1041:87: 1041 | cloudy_updraft_frac, cloudy_downdraft_frac, wprcp, & | 1 Warning: Unused dummy argument 'wprcp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1035:60: 1035 | sclrm, sclrp3, wpsclrp, sclrp2, sclrprtp, sclrpthlp, & | 1 Warning: Unused dummy argument 'wpsclrp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1036:86: 1036 | p_in_Pa, exner, rcm, cloud_frac, wp2thvp, wpthvp, rtpthvp, & | 1 Warning: Unused dummy argument 'wpthvp' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1037:81: 1037 | thlpthvp, sclrpthvp, wp2rtp, wp2thlp, wpup2, wpvp2, & | 1 Warning: Unused dummy argument 'wpup2' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/output_netcdf.F90:1037:88: 1037 | thlpthvp, sclrpthvp, wp2rtp, wp2thlp, wpup2, wpvp2, & | 1 Warning: Unused dummy argument 'wpvp2' at (1) [-Wunused-dummy-argument] Aborted by Gunther Huebler Sending interrupt signal to process gfortran: fatal error: Terminated signal terminated program f951 compilation terminated. make[1]: *** [Make.clubb_param:120: pdf_closure_module.o] Error 1 make: *** [Makefile:14: libclubb_param.a] Error 2 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................./home/jenkins/workspace/clubb_BFB_gfortran_test/compile/../src/CLUBB_core/mono_flux_limiter.F90:456:9: 456 | tmp, & | 1 Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable] Aborted by Gunther Huebler Sending interrupt signal to process Terminated gfortran: fatal error: Terminated signal terminated program f951 compilation terminated. make[1]: *** [Make.clubb_param:22: advance_clubb_core_module.o] Error 1 make: *** [Makefile:14: libclubb_param.a] Broken pipe script returned exit code 143 [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: 22a30079-d25f-4489-af0f-c54c817cf218 Finished: ABORTED