Changes

Summary

1. Add harmonicAnalysisRestart stream (details)
2. Adjust stream variables, after talking with Steve Brus. (details)
3. Scripts changes corresponding to updated Registry (details)
4. Populating the samxx code. It passes standalone tests. (details)
5. Adding YAKL submodule (details)
6. YAKL fix (details)
7. Making it clear that cub is a library and defaulting it to the home directory. Getting rid of stale information from older README (details)
8. Working toward adding -crm samxx as an option (details)
9. samxx and yakl are building. Working through decoupling crm_physics and sam still. (details)
10. Forgot to add params_kind.F90 (details)
11. The model builds with samxx on the CPU now (details)
12. Changed sam/ interface to pass cam physics data in rather than accessing from sam/. samxx is still giving the wrong answer (evidenced by complaints in e3sm log). I need to find what's different between the tests and the runs (details)
13. Working to get the samxx fortran baseline the same as the sam/ fortran code (details)
14. Working to get the samxx fortran baseline the same as the sam/ fortran code (details)
15. Working to get the samxx fortran baseline the same as the sam/ fortran code (details)
16. Using original FFTs. standalone has machine precision similarity (details)
17. Fix F-MMFXX compset (details)
18. Working on a hardwired approach to GPU for now. As always, CMake is a dumpster fire. (details)
19. restricting new stuff to when gnugpu is used (details)
20. CUDA build works currently. Simulation seems to run successfully. Answer looks good. (details)
21. Add comments, wrap CUDA_FLAGS sm_70 in a test for the summit machine (details)
22. Found a nicer way to specify CUDA and CUDA_FLAGS through config_compilers.xml (details)
23. A change to how USE_CUDA is set to PARENT_SCOPE in CMakeLists.txt (details)
24. Removing a few duplicate summit gnugpu entries in config_compilers.xml.   Also, moving the crm_ecpp_output_module.F90 file into sam and samxx separately. This breaks compilation, but I can't figure out why. (details)
25. Fixing the compilation bug. samxx is no longer trying to compile crm_ecpp_output_module.F90 and is leavng it to the libatm.a build instead. (details)
26. retabbing source files (details)
27. Using clang-format on the C++ code in samxx (details)
28. Revert "Using clang-format on the C++ code in samxx" (details)
29. using clang-format without all the submodules problems from before (details)
30. Revert "using clang-format without all the submodules problems from before" (details)
31. Reducing line length for samxx files (details)
32. better comment for MSA in crm_physics.F90 (details)
33. Apply MMF aerosol optics changes to samxx (details)
34. Adjust ifdefs to fix odd build error (details)
35. Fix build errors (details)
36. Add averaging step for crm_clear_rh (details)
37. Update mpas-source: fixes sea ice melt bug (details)
38. Add semi-colon (details)
39. Fixing a build issue with non-CUDA builds (details)
40. Homme: Fix number of levels in SL trajectory DSS. (details)
41. typo fix (details)
42. Homme: Grid total area diagnostic data in simulations. (details)
43. Homme: Fix a performance bug in boundary exchange. (details)
44. Rename clm testmods to elm (details)
45. Rename clm to elm in CIME (details)
46. Address PR comments (details)
47. Add activeTracerHorMixTendency to the timeSeriesStatsMonthlyOutput stream (details)
48. Address more PR comments (details)
49. update mpas-source: compass only (details)
50. Homme: fix cmake warning when homme is built without pio support. (details)
51. fates-nutrients: added site level mass balance tracking to phosphatase driven p uptake by plants. Cleaned up interface routines and where they call some routines from (details)
52. Update CIME submodule again (details)
53. Update mpas-source: compiler flag changes (details)
54. Add CIME src path for MPAS builds (details)
55. add dam construction year for transient runs (details)
56. small change (details)
57. Fixes default compute interval for heat budget (details)
58. Update mpas-source: fix landIceMask bug (details)
59. Fix format error (details)
60. Homme: set default value for USE_MPIEXEC (details)
61. Homme: correctly link to scorpio/scorpio_classic when building with pio support (details)
62. Homme: remove un-needed (and problematic) deps in share_kokkos_ut (details)
63. Homme: bug fix in col_ops_ut [packed reduction] (details)
64. Replace CLM with ELM in allactive compsets (details)
65. Change CLM to ELM in config_pesall (details)
66. Replace CLM with ELM in F-cases (details)
67. Fix clear air RH variables in samxx (details)
68. Update mpas-source: bugfix 3rd order advection coeff (details)
69. Fixing machine files to automatically add -DYAKL_DEBUG to CXXFLAGS for debug runs, fix for debugging symbols and for duplicate CUDA flags (details)
70. Homme: build homme_tool tests only if tool is enabled. (details)
71. Update MMF tests (details)
72. Homme: fix random initialization of HybridVCoord (details)
73. Homme: fix to TeamUtils, to accommodate league_size=0 (details)
74. Update mpas-source submodule with updated MALI code (details)
75. Initial commits to support the mpas.gis1to10km mesh in a tri-grid configuration (details)
76. Change IG compset definition to use FO-MALI instead of SIA-MALI (details)
77. Replace albany_input.xml file with yaml version (details)
78. Update albany_input.yaml to use tpetra/MueLu (details)
79. Update version of Albany used by MALI on Cori (details)
80. Update logic for MALI_DYNAMIC to reflect True/False values (details)
81. Make MALI_DYNAMIC options uppercase (details)
82. Make A_BGWCYCL1850 compset use FO MALI (details)
83. Update namelist scripts to correspond to changes to Registry (details)
84. Update fsurdat for r05 grid at sim_year 2000 (details)
85. update albany_input.yaml file (details)
86. Change MALI input file for mpas.gis1to10km resolution (details)
87. Comment out option to write out Albany exo files by default. (details)
88. Script changes to allow input file and decomp files have different dates (details)
89. Make BG and IG compsets used Static MALI (but with Albany build) (details)
90. Disable calving in MALI by default (details)
91. Modify IGCLM45_MLI compset to use SIA (details)
92. Checkout from master to reod the rebase (details)
93. Update fsurdat for r05 grid at sim_year 2000 (details)
94. Add last datafile changes to support new MALI implementation (details)
95. fixed a bug in the previous commit related to incloud -> grid-mean conversion (details)
96. Homme: Removed HOMMEXX_GB_CONFIG CPP logic (details)
97. updated clubbv2 (details)
98. HOMME: update dirk weights in tstep 10 in theta-l_kokkos target (details)
99. Another update (details)
100. Upgraded kokkos version to 3.2, and adjusted e3sm cmake logic (details)
101. This fix is to address Wuyin's comments on the overall consistency between in-cloud & (details)
102. fixing negative reservoir storage bug (details)
103. Exclude default paths when looking for kokkos (details)
104. Handling the C++14 requirement for yakl and samxx (details)
105. Update MPAS-Source: Rayleigh damping fix and continuation line (details)
106. Updated LUT for alignment between iESM and ELM (details)
107. Updated comments for LUT v2 (details)
108. Increased precision of calculations and outputs (details)
109. Updated Makefile to help with compilation on Cori and Compy (details)
110. Updated makefile and cleaned up some precision issues (details)
111. Added high-precision rounding to stabilize outputs across machines (details)
112. Also rounding the harvest outputs (details)
113. Turned off debug output for default (details)
114. Added additional make message in Makefile (details)
115. Updated 1850 and 2015 initial file mcrop names in code (details)
116. Update run example to include current input file directory (details)
117. Updated land use translator to more easily do different scenarios (details)
118. Updated mksurfdata tools for new LUT (details)
119. Updated namelist defaults for mksrf_vegtyp (details)
120. Update clm namelist definition to include new land surface file rcp tags (details)
121. Updated the default historical file name (details)
122. rename WRMUnit%active to WRMUnit%active_stage (details)
123. Changed kokkos version used for submodule (details)
124. HOMME: Removed pointless macro link_to_kokkos (details)
125. HOMME: fix Kokkos error in debug mode on Cuda (details)
126. I updated the version of CLUBB and SILHS used in this NGD CLUBB SILHS branch (details)
127. Upload some modifications which allow better LBA. (details)
128. Upgrade budgets numlib and numice, as well as the diagnostic package. (details)
129. We added a simple detrainment scheme in clubb_intr.F90, in order to reduce SWCF over storm tack. (details)
130. Normal update of diagnostic_v2_0. (details)
131. change clubb_ipdf_call_placement (details)
132. Commit for newbase run. issue #18 (details)
133. Commit for newbase. We added a conserved detrainment code, snowfrc=0.1, rhmini=0.8. #18 (details)
134. In order to limite the tunable parameters, we changed the advance_clubb_core_module.F90 and run scritp. We can repeat the result of [caseB](https://carson.math.uwm.edu/larson-group/internal/E3SM_Global_output/output-20200316/) (details)
135. Change a magic number of altitude_threshold, it allows a deeper mixing layer. issue #18 (details)
136. We increase `altitude_threshold` from 100 to 300m that makes a deeper mixing layar and solves fog problems over stratocumuls regimes. Issue #18. (details)
137. This commit can repeat simulation B, in https://github.com/larson-group/E3SM/issues/18#issuecomment-622158613 (details)
138. I fixed a bug of PDF_PARAMS_FRZ. issue #18 (details)
139. git sucks (details)
140. Adds E3SM support for MPAS-Ocean/Sea-ice grid ECwISC30to60E1r2. (details)
141. Adding JRA support to ECwISC30to60E1r2 grid (details)
142. Correcting paths for mapping files (details)
143. Create draw_micro_budget.py (details)
144. Update CLUBB's Diagnostic Pack (details)
145. Update E3SM_CLUBB_diag.py (details)
146. Update MPAS-Source: COMPASS and documentation only (details)
147. clean up unnecessary comments (details)
148. We added a new formula for [invrs_tau_xp2](https://github.com/larson-group/E3SM/issues/18#issuecomment-636089345). The results of this commit is shown [here](https://github.com/larson-group/E3SM/issues/18#issuecomment-638331975). (details)
149. Finishing off the previous cherry-pick/merge. (details)
150. This commit can reproduce simulation C in https://github.com/larson-group/E3SM/issues/18#issuecomment-640086590. (details)
151. We tuned tau and its equations. This tuning has better ITCZ and a stronger contrast between SC and CU. Results is shown in D of https://github.com/larson-group/E3SM/issues/18#issuecomment-640708110 (details)
152. Script support for new EC30to60E2v2 ocean mesh (details)
153. Update function_cal_mean.py (details)
154. update function_cal_mean.py for handling muli year (details)
155. Update E3SM_CLUBB_diag.py (details)
156. Update function_cal_mean.py (details)
157. Update function_pick_out.py (details)
158. We make a new Richardson related formula for invrs_tau_wpxp, in order to remove the `5`. This change makes a good distinction between CU and SC, result can be found in D of [plots](https://github.com/larson-group/E3SM/issues/18#issuecomment-657628303). (details)
159. Update CLUBB's diagnostic package. Now, making average for multiple years is allowed. Please set `nyear` in E3SM_CLUBB_diag.py. (details)
160. Clean up the codes of tau and Richardson number. issue #18 (details)
161. For EAM_tau and ZM. Issue #18 (details)
162. A run script for running tau and ZM. Issue #18 (details)
163. Clean up. (details)
164. EAM_tau_silhs run script. (details)
165. Repeat https://web.lcrc.anl.gov/public/e3sm/diagnostic_output/ac.zguo/eam_tau.n2p3_c151_pre1_fallp25_sgv_1d/ (details)
166. Remaping the SE to Lat-Lon (details)
167. Updating function_cal_mean.py to match exactly what is in Zhun's (details)
168. Run script for making global IOP files. (details)
169. Back to no-sgv run. (details)
170. Update Readme (details)
171. I modified the run_silhs_anvil_gust.csh runscript so that it runs (details)
172. I am adding the files necessary to run the AMWG postprocessing scripts on (details)
173. Within the context of my NGD CLUBB SILHS directory, I have changed the names, (details)
174. I committed some changes to my personal NGD CLUBB SILHS directory to set up (details)
175. I also changed the ne30 remapping file in my NGD CLUBB SILHS branch (details)
176. I added the environment file and run script for E3SM diags. (details)
177. I am also changing these remapping files over to my directory paths. (details)
178. Minor changes to postprocessing files. (details)
179. I updated E3SM to match recent changes made to CLUBB code. (details)
180. I removed l_use_ice_latent from the code, following recent changes to CLUBB. (details)
181. I am updating clubb_intr.F90 and subcol_SILHS.F90 based on recent (details)
182. I am updating E3SM-CLUBB for the addition of the l_partial_upwind_wp3 flag (details)
183. I altered the call to setup_pdf_parameters_api to pass in khzm, (details)
184. Changing code to work with newest silhs update. larson-group/cam#129 (details)
185. Partially reverting last commit. The solution was implemented in silhs_api. larson-group/cam#129 (details)
186. Making compatible with newest clubb changes. larson-group/cam#129 (details)
187. Bug fixes for land use translator and surface file creation (details)
188. Update the EC30to60E2r2 salinity restoring file name (details)
189. Set GM-kappa to 600 for EC30to60E2r2 G-cases (details)
190. cmake changes summit (details)
191. cmake change summit (details)
192. I altered parameters_tunable.F90 so that it looks more like the (details)
193. Clean up crm_history_init (details)
194. Fixing compilation errors in this branch. (details)
195. Fix MMF timing factor output (details)
196. Minor clm to elm changes. (details)
197. Change timing_factor to subcycle_factor (details)
198. Update CIME to master to bring in PR#3701 from ESMCI/jonbob/add-new-ocnice-grids (details)
199. Change SP* history variables to MMF_* (details)
200. Homme: fixing errors reported by valgrind. (details)
201. Homme: fixing bug related to diagnostic calls in prim_driver.cpp (details)
202. anvil cmake changes (details)
203. Homme: couple of fixes in preqx_kokkos to match preqx implementation (details)
204. adds ICG support for EC30to60E2r02 (details)
205. Homme: Adding HOMMEXX_BFB_TESTING to preqx and preqx_kokkos config files (details)
206. Homme: bug fix in preqx_kokkos caar functor (details)
207. I committed all the updated CLUBB namelist variables to (details)
208. typo (details)
209. Update mpas-source: GM/Redi and surface buoyancy fixes (details)
210. Update to E3SM scrpts corresponding to mpas-ocean Registry changes (details)
211. Changes to make everything run. (details)
212. Borrowing code from the master for namelist variables and printing (details)
213. Fixed a compilation error. (details)
214. Set mocStreamfunctionAM off by default for new EC30to60E2r2 mesh (details)
215. adds default layout for EC6030E2r2 for compy (details)
216. Revert "adds default layout for EC6030E2r2 for compy" (details)
217. adds default layout for EC6030E2r2 for compy (details)
218. Enable E3SM on Tulip (details)
219. I am making the remaining changes to parameter values necessary to (details)
220. I am committing the changes necessary to bring back the Lscale averaging (details)
221. A few more clm to elm mods (details)
222. Rename user_nl_clm in testdefs (details)
223. Rename clm to elm in config_archive (details)
224. Change ELM output to include "elm" string (details)
225. Update cime branch hash (details)
226. Update mpas-source: Added GPU macros to seaice core (details)
227. Updating to Scorpio ver 1.1.3 (details)
228. adding summit modules (details)
229. mods to cmake and bash scripts to have flexibility in run/test scripts for modules, omp options, jsrun command (details)
230. Update output file metdata with ELM (details)
231. Update README.txt (details)
232. A replay SCM run script. (details)
233. Professor and I added lines of code in order to find out the negative spike of T. (details)
234. Submit run should be kept as true. (details)
235. Reviving the standalone tests, and using sam/ fortran code rather than custom fortran code (details)
236. Switching to YAKL SimpleBounds for lower register usage on the GPU. Bug fix for previous implementation of crm_clear_rh. (details)
237. Update mpas-source: improved sea ice testing (details)
238. remove crm_gpu test mod (details)
239. Fix saxx cpp_driver (details)
240. Update standalone test notes and env (details)
241. Homme: bug fix in preqx_kokkos, regarding un-initialized buffers (details)
242. Change area_p to area (details)
243. Rebase cime changes (details)
244. Add MPAS-Seaice files for OpenMP or OpenACC offload (details)
245. Update paths for moved files (details)
246. Add netcdf to Tulip's LD_LIBRARY_PATH (details)
247. incremental: fixed flags for kokkos target; changes to have only kokkos targets on summit (details)
248. Remove debugging lines in elm buildnml (details)
249. Replace CLM with ELM in a few pelayout entires (details)
250. Homme: Remove some debug-build output. (details)
251. finish summit scripts (details)
252. EAM: Remove dynamics' Q fields from SE dycore restart, leaving only Qdp. (details)
253. change options for anvil bfb (details)
254. addition of snicar for land and sea ice, 5 sea ice snow layers, and ITD snow redistribution (details)
255. modify standalone conda commands (details)
256. Centralized definition of r8 for CRM code (details)
257. Address PR comments about private/public (details)
258. Update compy L pe-layout for trigrid with EC30to60 (details)
259. Rename cam to eam (details)
260. Change submodule location for cosp2 and rrtmgp externals (details)
261. Rename cam testmods to eam (details)
262. Rename user_nl_cams in testmods (details)
263. Address PR comments (details)
264. Updating standalone framework (details)
265. update mpas-source: Fix OMP Directives and Loop Bounds in Ocean (details)
266. Fixing a standalone bug with params_kind.F90 (details)
267. I changed setup_clubb_pdf_params.F90 and latin_hypercube_driver_module.F90 (details)
268. Rename cam to eam in CIME (details)
269. Change CAM to EAM in allactive compsets (details)
270. Modify more cime_config files for eam (details)
271. Adjust other component config files for EAM (details)
272. Modify a few more testmods (details)
273. Rename cam to eam in ChemPreprocess.pm for paths to chem_proc and chemistry (details)
274. Rename cam to eam in machine Depends files for cmake (details)
275. update mpas-source: vertical transport in stage 1 (details)
276. Additions to Monthly output (details)
277. Fix scorpio submodules after bad merge (details)
278. Update cime pointer (details)
279. revert some changes (details)
280. Replace cam with eam in cmake files (details)
281. Updated fates interface bc structure for CNP (details)
282. I added some documentation (comments/clean-up) and thresholding on dumr, dumnr, dums, and dumns. (details)
283. Add gmKappaScaling and gmBolusKappa (details)
284. Adds reservoir stratification to MOSART-heat. (details)
285. Switch to deafault E3SM V2 output (details)
286. Update Depends files to new eam name (details)
287. Initial commit to prepend casename to mpas output files (details)
288. fix a bug in ELM-Erosion (details)
289. Change eam output files to use eam in name (details)
290. Update cime submodule (details)
291. Uses isnan from shr_infnan_mod (details)
292. inctease time limit for homme suite for anvil (details)
293. Improve Travis debugging (details)
294. Update ICG files for oEC60to30v3 so seaice has new number of snow levels (details)
295. Rename .mod files in chem_proc to .in (details)
296. update buildnml for E3SM V2 (details)
297. Change pattern matching of .mod to .in on setting chem_mods file (details)
298. Update mpas-source: CVMix and GM updates (details)
299. Allow up to 10 atm tapes (details)
300. Update bld scripts autogenerated from Registry changes (details)
301. update to include monthly albedo by surface type, and pond fraction as default (details)
302. Update mpas-source: CVMix and GM updates (details)
303. Sending ALM as hlm_name to FATES instead of CLM (details)
304. Change default for config_GM_Visbeck_alpha in coupled model (details)
305. Change name of CAM_USER_MODS (details)
306. Add MMF_WTKE output variable (details)
307. change MMF_WTKE to MMF_TKEW (details)
308. Enable moentum feedback in SAM++ (details)
309. Fix MMF momentum feedback (details)
310. Apply dosurface change to fortran CRM (details)
311. Update eam global attributes (details)
312. Update elm global attributes (details)
313. Deallocate local vector that is not deallocated automatically (details)
314. Adding big_number_finder.py to the postprocessing directory. (details)
315. update mpas-source: Modify ocean freezing temperature to match MPAS-Seaice (details)
316. Restart from existing land files that do not contain required variables for plant hydraulics. (details)
317. Add comments. (details)
318. Update bld scripts autogenerated from Registry changes (details)
319. Update config_open_ocean_freezing_temperature_coeff (details)
320. Increase field widths in atm_chunk_cost.txt (details)
321. Compiler change after Tulip OS upgrade (details)
322. Adds support to put crops different landunits (details)
323. Fixes to fractions based on global run (details)
324. Fixes memory leak (details)
325. Add theta-SL-pg2 config for EAM Antarcrica RRM (details)
326. Update mosart global attributes (details)
327. Add contact email to eam global attributes (details)
328. changes for skybridge bfb test (details)
329. revert gitmodules formatting (details)
330. Update ATM2LND_SMAP and other corrections (details)
331. Finish moving cam to eam (details)
332. fixing new paths (details)
333. Update ICG file datestamps for EC30to60E2r2 (details)
334. I updated the E3SM-CLUBB plots to create a new directory called (details)
335. I updated the run_silhs_anvil_gust.csh runscript to include (details)
336. I have added the files necessary for running AMWG variability (details)
337. add avx=0 to anvil, skybridge optimized setup (details)
338. Update fully coupled e3sm_prod test to v2 (details)
339. cice and cime changes for  cime changes to rename CCSM_cppdefs to CIME_cppdefs. We are keeping both for right now (one is a copy of the other) to give models time to adjust) (details)
340. changes to components/cmake/build_model.cmake for CIME_cppdefs file (details)
341. changes to E3SM/components/eam/ for CIME_cppdefs (details)
342. fixed up cice, elm, and mosart (details)
343. Improved /components/cice/cime_config/buildlib (details)
344. Improved /components/cice/cime_config/buildlib 2 (details)
345. Improved /components/cice/cime_config/buildlib 3 (details)
346. reverting avx_ver=0 from anvil and skybridge, causing wrong flags (details)
347. Initial scripts support for new WC14to60E2r3 ocn/ice grid (details)
348. Add WC14to60E2r3 grid description (details)
349. Update mpas-ocean defaults for new WC14to60E2r3 grid (details)
350. Update WC14to60 mapping and domain files (details)
351. Add a separate grid for the 1900 spinup of this mesh (details)
352. Set config_hmix_use_ref_cell_width to true for the WC14to60E2r3 grid (details)
353. Update datestamp for WC14to60E2r3 ICG files (details)
354. Update grid alias for WC14to60E2r3 to use EAM instead of CAM5 (details)
355. Update docn config to add EAMe (details)
356. Remove UNICON pt1 - cime and build configure (details)
357. Remove UNICON pt2 - misc stuff outside physics (details)
358. Remove UNICON pt3 - general physics changes (details)
359. Remove UNICON pt4 - convection+micro+macro physics (details)
360. Update mapping and domain files for EC30to60E2r2 grid (details)
361. Remove UNICON pt5 - unicon files (details)
362. Homme: using exclusively SIMD Vector for Scalar type. (details)
363. Add pe-layout for T62_oEC60to30v3 DTESTM on sandiatoss3 on 4 nodes (details)
364. Remove UNICON pt6 - fix micro/macro (details)
365. Remove trigmem (details)
366. Add history global att to eam (details)
367. Update elm global atts (details)
368. Update mosart global atts (details)
369. remove avx flag as it is resolved (details)
370. Files for northamericax4v1pg2_r0125_WC14to60E2r3(_ICG) (details)
371. Adjusting PE layouts for compy and a%ne0np4_northamericax4v1.pg2_l%.+_oi%WC14to60E2r3. (details)
372. Update the 'L' (Large) default PE layout for compy and RRM V2. (details)
373. NA-ocn WC RRM: Updates for CAM -> EAM. (details)
374. Machine file changes for PNNL Sooty (details)
375. Finish removing trigmem option (details)
376. Homme: Removed pointless include dir in share_kokkos_ut CMakeLists.txt (details)
377. Homme: Setting kokkos arch in some mach file used for nightlies (details)
378. Homme: enable unit tests only in BFB builds (details)
379. Improved e3sm commits to 1)Open the new CIME_cppdefs file if the file exists 2)Open and read the old CCSM_cppdefs file if the system can not find the CIME_cppdefs file (details)
380. Fixed white space. (details)
381. Fixed white space.a (details)
382. fixed some formatting (details)
383. Homme: fixing some cmake logic regarding auto-enabling of targets (details)
384. Move eam history attribute (details)
385. Homme: fixing odd non-bfb issue with Intel18 in Caar functor. (details)
386. Update mpas-source: modify Eden Greatbatch length scale; clean up flags (details)
387. Add additional diagnostic outputs to track Sudden Stratospheric Warming events (details)
388. Add auto-generated bld files corresponding to Registry changes (details)
389. Fix cut-and-paste error that ended up with two single quotation marks (details)
390. This simulation is BFB with the refactored code (details)
391. Adds endrun calls for blocking radiation diagnostics (details)
392. RRTMGP test runs fine at this point (details)
393. Fixes the support for user-defined grid for ELM (details)
394. Adds a test for ELM_USRDAT resolution (details)
395. CRM tests run fine now (details)
396. Added prescribed ice mode to MPAS-Seaice component (details)
397. AMB fix for unused kokkos in mpas (details)
398. NA-ocn WC RRM: XS PE layout for cori-knl just to get something going (details)
399. Update mksurfdata defaults for 0.5x0.5 res and fix a small bug (details)
400. Update mpas-source: Unreverted revert of MPAS-Seaice (details)
401. Adv cime sha (details)
402. Move new F-compset definition to EAM (details)
403. Make build-namelist-section consistent with build-namelist (details)
404. Add FC5AV1C-L-MPASSI compset (details)
405. Homme, COMPOSE: Fix debug-build error. (details)
406. Homme: Use 'any' instead of 'maxval'. (details)
407. Add layouts for RRM v2 config on compy. (details)
408. Bring in hot fix to kokkos submodule, relative to CRAYPE linking (details)
409. Renames local variable with clm to elm (details)
410. Update mpas-source: fixed prescribed ice bug in seaice with category thickness limits (details)
411. Update again kokkos version, following bug fix (details)
412. I changed cice/cime_config/buildlib/ to store (details)
413. Cleaned up unnecessary if statement block. (details)
414. Revert "Cleaned up unnecessary if statement block." (details)
415. make SCM compatible with thetal dycore (details)
416. Mass test: Double tol on CO2_FF global mass based on compy_pgi change. (details)
417. bug fixes for working code (details)
418. Adv cime sha to include PRs #3740 & #3741, (details)
419. EAM: Use new rebin_fast in volc_radiation code and rework idxs. (details)
420. Update mpas-source: fixed bug with index in prescribed ice in seaice (details)
421. RRM: Add an XS Cori-KNL layout from Noel. (details)
422. turn on xx tests (details)
423. activating dynamic crop fraction when prognostic crop model is turned off (details)
424. EAM: Remove some old comments. (details)
425. Defense against use of user_nl_cam after renaming cam to eam (details)
426. first attempt to switch (details)
427. Rename user_nl_cam in test allactive-v1cmip6 (details)
428. Remove two MOC flags (details)
429. Update mpas-source for moc update (details)
430. Add moc GM variables to monthly output (details)
431. bug fix for nitrogen fixation calculation for ECA (details)
432. Scorpio version 1.1.4 (details)
433. Add user_nl_mpassi for elm bgcexp testmod in order to pass automated tests (details)
434. Remove support for Makefile-based builds for E3SM components (details)
435. another cime update (details)
436. For cori-knl, update PE layout for F compsets at ne4 resolution. (details)
437. Set fill values for radiation outputs (details)
438. update flag to allow one-way irrigation, remove unused output, remove redundant comments, fix area fraction inconsistency for coastal irrigation (details)
439. Add missing HR output for RRTMGP (details)
440. another cime update (details)
441. Hommexx: setting vector size in eam builds (details)
442. Hommexx: fix usage of HOMMEXX_CUDA_SHARE_BUFFER (details)
443. Hommexx: fixed include path for Kokkos_Random.hpp (details)
444. Hommexx: fix eam configure script for preqx_kokkos (details)
445. Homme: fixed some cmake/compiler warnings (details)
446. Homme: better handling of cxx homme session (details)
447. update unit in the output (details)
448. Homme: added interface to BoundaryExchange (details)
449. Homme: adding HOMME_WITHOUT_PIOLIBRARY to compile definitions of executables (details)
450. Homme: added macro to create a library for preqx_kokkos and theta-l_kokkos (details)
451. Homme: store blas/lapack libs location in an internal cache var (details)
452. Homme: created f2c module for kokkos targets, plus breaking up some functions (details)
453. Homme: minor change in ElementsGeometry initialization (details)
454. Homme: make some CAM ifdefs also check for SCREAM (details)
455. Apply fixes to MMF too (details)
456. Update mpas-source: Fix cmake for tool exes (details)
457. another cime update (details)
458. Homme: init cxx functors before copying data into views (details)
459. Add timing to compiles and links (details)
460. make the code compatible with old MOSART parameter file (details)
461. This is a rebased after cam->eam change (details)
462. Rebased:Default case is working wih diags and it is BFB (details)
463. Improve timing feature (details)
464. Preparations for resolving merge between FATES nutrient branch and hash 45c7a29 (details)
465. change default settings for a thetal run (details)
466. Incrementally rectifying conflicts with FATES-CLP and master through evaluating diffs (details)
467. conflict resolutions between master and FATES-CNP (details)
468. conflict resolutions between fates-cnp and master (details)
469. conflict resolutions between fates-cnp and master (details)
470. conflict resolutions between fates-cnp and master (details)
471. conflict resolutions between fates-cnp and master (details)
472. Rework timing so that it works with -jN (details)
473. conflict resolutions between fates-cnp and master (details)
474. conflict resolutions between fates-cnp and master (details)
475. updating fates submodule pointer to api 14 (details)
476. Cleaned up clear_rh logic and fixed calcsize ifdef for modal_aero (details)
477. Bug fix for prescribed aerosols (details)
478. Removed some unused vars and use rad_cnst sigma (details)
479. Everything still BFB, changes related to dgnum and voltonumb (details)
480. still BFB, some cleanup (details)
481. COMPASS only, New Mesh: EC15to60E2r4 (details)
482. Update cime and improve time format (details)
483. temporary refactor of the proper way q advection should be done, refactor on way (details)
484. fixing build for mmfxx test (details)
485. I am updating clubb_intr.F90, clubb_api_module, and subcol_SILHS.F90 (details)
486. Reworked logic for calcsize_diag, still BFB (details)
487. minor cleanup, bfb (details)
488. keep *elm-bgcexptests with preqx (details)
489. make scm test use preqx (details)
490. cleaned up update_mmr logic at some places and removed some pointers (details)
491. Cleaned up update_mmr logic (details)
492. Always turn on our wrapper (details)
493. Fixes build a build error (details)
494. alternate way to do vertical advection (details)
495. build namelist fix (details)
496. refactor how the theta-l dycore handles the vertical advection to be more consistent (details)
497. update comments and SE improvements (details)
498. Homme: cmake fixes for library targets (details)
499. bug fix for update_T logical (details)
500. fix some spacing issues (details)
501. Renames files (details)
502. Renames clm_drv to elm_drv (details)
503. Renames private subroutines (details)
504. Renames clm_finializedMod to elm_finializedMod (details)
505. Renames clm_initializeMod to elm_initializeMod (details)
506. Renames clm_instMod to elm_instMod (details)
507. Renames clm_interface_bgcType to elm_interface_bgcType (details)
508. Renames clm_interface_th_datatype to elm_interface_th_datatype (details)
509. Renames clm_interface_thType to elm_interface_thType (details)
510. Renames clm_interface_dataType to elm_interface_dataType (details)
511. Renames clm_interface_data_type to elm_interface_data_type (details)
512. Renames clm_inst_biogeochem/biogeophys to elm_inst_biogeochem/biogeophys (details)
513. Renames clm_interface_funcsMod to elm_interface_funcsMod (details)
514. Renames get_clm to get_elm (details)
515. Renames clm_bgc to elm_bgc (details)
516. Renames clm_pf_idata, clm_bgc_data, clm_idata to elm_pf_idata, elm_bgc_data, elm_idata (details)
517. Renames clm_varcon to elm_varcon (details)
518. Renames clm_varpar to elm_varpar (details)
519. Renames clm_varctl to elm_varctl (details)
520. Renames clm_varsur to elm_varsur (details)
521. Renames clm_nlUtilsMod to elm_nlUtilsMod (details)
522. Renames vic_clm_fract to vic_elm_fract (details)
523. Renames clm_cpl_indices to elm_cpl_indices (details)
524. Renames CLMFatesInterfaceMod to ELMFatesInterfaceMod (details)
525. Renames clm_varorb to elm_varorb (details)
526. Renames clm_domain_mct to elm_domain_mct (details)
527. Deletes test directories that are not used by E3SM (details)
528. Renames dom_clm to dom_elm (details)
529. Renames u10_clm_patch to u10_elm_patch (details)
530. Renames clmlevel to elmlevel (details)
531. Renames clmveg to elmveg (details)
532. Updates output message from CLM to ELM (details)
533. Renames tau_clm to tau_elm (details)
534. Renames clm_inparm to elm_inparm (details)
535. Renames multiple categories in namelist from clm to elm (details)
536. Changes multiple namelist options from CLM to ELM (details)
537. Changes CLM-PFLTORAN interface to ELM-PFLOTRAN interface (details)
538. Change clm_interface_data to elm_interface_data (details)
539. Changes CLM to ELM in interface for PFLOTRAN (details)
540. Changes CLM to ELM in initSubgridMod (details)
541. Changes CLM to ELM in timers (details)
542. Changes subroutine name (details)
543. Changes name of the option to merge crops (details)
544. Changes CLM to ELM in histFileMod (details)
545. Change user namelist name (details)
546. Changes BGC subroutine name from CLM to ELM (details)
547. Changes CLM to ELM in comments (details)
548. setup conusx4 res for theta (details)
549. mpas-source: improve performance of diagnostics (details)
550. Fixing the constants being different in samxx than in sam. Diffs in standalone are much better now. (details)
551. Fixing fortran code bug in crm_clear_rh and mirroring in C++ code (details)
552. C++ code now gives correct results in standalone on the CPU (details)
553. Fix aqua compset for MMF w/ SAM++ (details)
554. Update MMF standalone test files (details)
555. Major bug fix - index error in SAM++ scalar diff (details)
556. CRM Kurant update (details)
557. Update perturb_t_magnitude in SAM++ (details)
558. Misc C++ casting and index updates (details)
559. rename dummy1 variable to temp_tend, which is more descriptive (details)
560. This run script can reproduce good simulations for both SCM cases BOMEX and RF01. Issue #18. (details)
561. More 'state_debug_checks' in physpkg.F90, also output the location when we find bad value of state%t. (details)
562. fix mmf tests (details)
563. Fixes namelist options for a test (details)
564. fixes the path surface dataset (details)
565. put SCM logical around SCM specific code block (details)
566. Update mpas-source: updated sea ice with alignment of atmos coupling (details)
567. typo fix (details)
568. Set PIO_ROOT=1 for ne30-coupled cases on sandiatoss3 (details)
569. remove SCM from SL tracer advection (details)
570. travis: Print e3sm bldlog if build fails (details)
571. Move PIO_ROOT=1 mod to ERP testmod (details)
572. Fix build time calls (details)
573. Check time availability (details)
574. Another cime build fix (details)
575. Update cime again with new prov stuff (details)
576. further extration from SL transport in SCM (details)
577. cleanup (details)
578. whitespace issue fix (details)
579. linebreak fix (details)
580. final cime update (details)
581. remove unnecessary nu parameter from SCM namelist settings (details)
582. Update ERP testmod (details)
583. switch theta-l dycore to tensorHV (details)
584. all hgrid= conditions need a dyn_target= also (details)
585. Increase MOSART restart file name lengths (details)
586. Add wcprod test mod (details)
587. Update Blues modules to nvhpc (details)
588. change 3 to 3.0 (details)
589. Replace array reference argument with a scalar (details)
590. Fix mis-declared variables (details)
591. Explain why replacing array reference argument with a scalar (details)
592. Add wcprod test mod for eam (details)
593. Update e3sm_prod suite to v2 cases (details)
594. Changes NTASKS for ELM-USRDAT test (details)
595. account name on bebop cluster has been renamed 'e3sm' (details)
596. Bug fix to account for snow backscattering in COSPv2 (details)
597. Fixes some comments and magic numbers (details)
598. Pointed pointer to null (details)
599. Fixes GNU bug differently to allow BFB results. (details)
600. remove some of settings in ftype tests (details)
601. make bgc tests use theta (details)
602. Changes that address review comments (details)
603. Rebased again for cam->eam change(12/02/2020) (details)
604. fixed a typo and removed a comment (details)
605. Removed references to "cam" in comments about submodule paths (details)
606. fixed typo and removed a reference to clm as well (details)
607. Removes a file that was mistakenly added earlier (details)
608. Initialize mixing ratio when reading restarts (details)
609. Removes clm4_0 and clm5_0 from compset namelist (details)
610. Updates the namelist build scripts (details)
611. Updates indenting (details)
612. Renames xml files (details)
613. Renames builds perl script (details)
614. Remove tests not used by ELM (details)
615. Removes script to determine verion of the model (details)
616. Removes clm4_0 (details)
617. Renames namelist options from CLM to ELM (details)
618. Moved new files into the eam directory structure (details)
619. Fixes build options in few tests (details)
620. Add Chrysalis machine configuration (details)
621. Add new Chrysalis modules after storage upgrade (details)
622. Add omp master to a section of code in init that would otherwise have a race condition. (details)
623. Moved the shared nlev_tom variable initialization to be set only once by master thread. (details)
624. Init an array to zero. (details)
625. There were 3 other arrays that should also be set to zero before use, but these (details)
626. Move where the AOD arrays are initialized to zero. (details)
627. Fixes some strings, all dev tests pass with PGI on Compy (details)
628. Converts integers to logicals in two if conditions (details)
629. Bug fix in sea ice coupling file to use the same freezing temperature as (details)
630. Switch on high-frequncy coupling in sea ice at 10 iterations (details)
631. conflict resolution on cherry-pick (details)
632. resolved conflicts on cherry-pick (details)
633. Support for ne30np4pg2 in ELM (details)
634. This commit upgrades the version of CLUBB and SILHS found in Brian's NGD (details)
635. slightly modified logic on FATES and fixation (details)
636. Reverting to older and simplified version of allocation before attempting to merge with master. (details)
637. Add grid support for the new ne30np4.pg2 ELM files (details)
638. initial start of whitespace fix (details)
639. does this work? (details)
640. seems to work (details)
641. almost there (details)
642. done! (details)
643. fixed broadcast order of use_fates (details)
644. fixes for global norms mod and C++/Kokkos (details)
645. shallow water fix (details)
646. Add GNU modules (details)
647. fates api 14 (details)
648. I updated the version of CLUBB-SILHS found in UWM's NGD E3SM-CLUBB-SILHS (details)
649. fixing _kokkos builds (details)
650. Fixes compute wetdens logic (details)
651. Advance cime to include GPTL process id update (details)
652. Rename LCRC paths from acme to e3sm and clean up (details)
653. fates cnp, minor fix to fire and n/p dep interpolations. (details)
654. FATES API 14 fixes (details)
655. update mpas-source: Add diagnostics module for GPU performance (details)
656. Unit testing fixes? (details)
657. Cleaned up Convective Variance Transport (details)
658. Initial C++ port of CVT (details)
659. C++ VT bug fixes (details)
660. VT Bug fix and summit config adjustment for PGI (details)
661. FATES coupling, temporarily disabling SOIL_ORDER read-ins when fates is on, due to lack of data in the 4x5 surfacefile. (details)
662. fates api 14 cnp p1, nee coupling fix and comments fix (details)
663. Minor VT updates (details)
664. pass moisture and temp scalars from ColumnDataType to FATES (details)
665. Change MMF variance transport naming convention (details)
666. Updating to Scorpio v1.1.5 (details)
667. fixed a typo in the fates test list (details)
668. I updated the version of CLUBB-SILHS in the NGD E3SM-CLUBB-SILHS (details)
669. Fix PRNG for setperturb in SAM++ (details)
670. Update mpas-source: update seaice with ocean surface temperature bug fix (details)
671. Add Circle CI test (details)
672. Bug fix for crashing SAM++ VT cases (details)
673. Add history variables for large-scale VT forcing (details)
674. fix for gnu compiler (details)
675. Add pelayouts for e3sm_prod WC case (details)
676. Fixes a threading issue (details)
677. Minor cleanup (details)
678. Change optimizations of modal_aero_calcsize.F90 to -O1 for Compy's PGI (details)
679. Replace module removes with module swaps on Theta (details)
680. Changes ocean defaults to be consistent with WC v2 (details)
681. enables MOC am (details)
682. Update paths and module loads on Theta (details)
683. Update mpas-source: Fix bug with high freq coupling in MPAS-Seaice (details)
684. Updates hgrid for 0.125x0.125 (details)
685. Add C++ FFT filter routine for VT (details)
686. Add code for sanity checking YAKL FFT (details)
687. Added fortran FFT sanity check code (details)
688. Minor clean up (details)
689. Update mpas-source: Updated sea ice emissivity (details)
690. Add ne4 pelayout on Chrysalis (details)
691. Add HOMME machine file for Chrysalis (details)
692. fixed fates logic for decomp_verprofiles() call (details)
693. fates: updated logic during capacitance-based phosphatase dynamics to move logical filters outside of loops (for performance). (details)
694. Changed name of call ZeroUpscaled to ZeroForFates (details)
695. removed obsolete print statement (details)
696. Replace netcdf versions with versions used on Anvil (details)
697. updated name of zero-ing of column level datastructures when fates is on (details)
698. removed temporary file AllocationMod.F90_new (details)
699. updating fates submodule pointer to tag sci.1.43.2_api.14.2.0 (details)
700. Removal of high-frequency coupling for V2 default sea ice coupling (details)
701. makes parameter changes valid for EC30to60E2r2 only (details)
702. Add IntelMPI modules on Chrysalis (details)
703. fixing unit tests and minor formatting (details)
704. clean up (details)
705. Add new compsets and atm use_case files for v2 (details)
706. Correct closing tag  for some clubb params in use_case files. (details)
707. Add v2 setting for missing micro_mg_accre_enhan_fac (details)
708. Set default atmos parameters for v2 in existing compsets (details)
709. Update elm config_component to set proper use case for new  compsets (details)
710. Fix CPP variable for filtered VT (details)
711. Using pointers to avoid unnecessary copies of data (details)
712. Add support for chrysalis to provenance.py (details)
713. Add job monitoring script for chrysalis (details)
714. time level fix for SCM (details)
715. fix spacing issues (details)
716. Change default location for SAVE_TIMING_DIR on Chrysalis (details)
717. Update mpas-source: Updated sea ice for algal grazing bug (details)
718. minor bug fixes bring fates api to 14.2 (details)
719. Remove I_MPI_ADJUST_ALLREDUCE=1 on Chrysalis (details)
720. I am trying to re-add the links to the externals that were in conflict during (details)
721. Trying to revert the remainder of these merge-conflicted externals to the (details)
722. Adding externals/YAKL to the list (details)
723. Remove FFT test scripts (details)
724. Remove ifdefs for MMF variance transport (details)
725. VT namelist change (details)
726. VT bug fix in configure (details)
727. I am making this commit to fix the recent merge of the E3SM master branch into (details)
728. Removing a duplicate print statement for all CLUBB tunable parameters. (details)
729. update comments (details)
730. fix planar test directories (details)
731. I made changes necessary for postprocessing the updated output files, where (details)
732. Changing the E3SM-CLUBB plot files to account for the file naming convention (details)
733. Address PR comments (details)
734. Widen halo for Redi hmix computation (details)
735. VT bug fix (details)
736. Update CIME submodule (details)
737. Rename default v2 compsets and use_case files (details)
738. Set back the CIME commit to avoid PIO issues (details)
739. Clean up av1c/f series of compsets except *AV1C-L and FC5AV1C-H01A for nightly tests (details)
740. Rename namelist_defaults_cam.xml to namelist_defaults_eam.xml (details)
741. Add chrysalis prov (details)
742. Homme, SL: Add typedef to make SL transport run in a GPU build. (details)
743. Homme, EAM: More details for dt_remap_factor and dt_tracer_factor. (details)
744. Add new semi-implicit namelist groups to ocean namelist (details)
745. Update ocean build-namelist with new namelists for semi-implicit (details)
746. Add bfb thread mode for semi-implicit (details)
747. Update flag name (details)
748. Update mpas-source (details)
749. Adds support for NA RRM grid on ELM (details)
750. fix enax and twpx  runs (details)
751. Update mpas-o namelist definitions with output from automated scripts (details)
752. update mpas-source: cosine bell test case (details)
753. Update mpas-source: Port ocean velocity to GPU (details)
754. Enable Cray compiler on Theta (details)
755. Use ceiling for number of job nodes (details)
756. Update modules (details)
757. Add cray compiler to ChemPreprocess.pm (details)
758. Update Cray compiler to cce/10.0.3 on Theta (details)
759. Remove darshan for Cray compiler on Theta (details)
760. Fixes a NBFB issue when clubb_use_sgv and zmconv_tp_fac are used (details)
761. Add grid definition and maps for bi-grid NA RRM (details)
762. mpas clean-up: remove compass/ocean, add doc template (details)
763. Adds support for NA RRM grid on ELM (details)
764. Add gnu modules for intel-mpi on Chrysalis (details)
765. Updates the name of surface data files (details)
766. Updates the hgrid names (details)
767. More changes due to renmaing of hgrid (details)
768. I updated the version of CLUBB and SILHS in the latest E3SMv2 NGD (details)
769. Committed some E3SM-sided updates to work with the new version of CLUBB-SILHS. (details)
770. Enable test runs on compute nodes on Chrysalis (details)
771. Update HOMME cmake files on Chrysalis (details)
772. Reverted accidently modified vertical_diffusion.F90 file (details)
773. Fix uninitialized pblt600 and replace a remaining FC5AV1C-04P2 test (details)
774. homme_tool fixes for interpolating NE1024 data (details)
775. fix index bug (details)
776. update cori.job script to use threads (details)
777. Further updates to CLUBB, which will be "made official" later. (details)
778. I added subcol_SILHS_vert_decorr_coef to the namelist. (details)
779. I added subcol_SILHS_vert_decorr_coef to namelist_definition.xml. (details)
780. Add procs-per-node option to intel-mpi mpirun on Chrysalis (details)
781. Update mappy to gcc-8.1.0 to match summit (details)
782. Update mpas-source: fixed seaice column message threading bug (details)
783. Modifying E3SM to work with the latest version of CLUBB-SILHS. (details)
784. Adding clubb_C_invrs_tau_wpxp_Ri and clubb_C_invrs_tau_wpxp_N2_thresh (details)
785. Consolidate v2 atm parameter values into a common default file (details)
786. Run intel-mpi with slurm srun on Chrysalis (details)
787. I am officially upgrading the version of CLUBB and SILHS used in E3SM to (details)
788. Altered the git commit hash in the run script to reflect the updated (details)
789. Resetting clubb_debug_level from 3 to 2 allows us to get rid of the (details)
790. Adds test SMS.northamericax4v1pg2_WC14to60E2r3_ICG.A_WCYCL1850S_CMIP6 (details)
791. Simplify and use srun for homme on Chrysalis (details)
792. Updating to Scorpio ver 1.1.6 (details)
793. Fix calc. for max. number of levels when using noI8 and update comments (details)
794. Update mappy serial env (details)
795. I am changing TTEND_CLUBB back to STEND_CLUBB for use in output statistics. (details)
796. Some mods to the test, shell commands  and the use case files (details)
797. Removed some unused user_nl* files (details)
798. Changes test name to remove "v2" (details)
799. Update mpas-source: propagate ocn_diagnostics_variables to shared/ (details)
800. Update argument lists in ocn_comp_mct for recent MPAS-O changes (details)
801. Update CIME submodule (details)
802. I updated draw_clubb_budget.py to reflect the CLUBB stat name change (details)
803. Added history fields back with cosp turned on (details)
804. Adds an "S" PE layout anvil (details)
805. Update framework in mpas-source (details)
806. Update CXXFLAGS (details)
807. Use ocn_diagnostics_variables in ocn_comp_mct driver (details)
808. Explicitly specify UCX transport (details)
809. Update mpas-source: finish propagating ocn_diagnostics_variables (details)
810. Update cime again to remove PIO performance degradation (details)
811. Fixes for F-EAMv1 and F-MMF1 compsets needed after phys name change (details)
812. Adding PE layouts for v2RRM on cori-knl (details)
813. I am cherry-picking git commit 6e2592c from January 13, 2021 and adding (details)
814. CIME submodule update (details)
815. update mpas-source: Move surface pressure and zMid before EOS (details)
816. Fix restart NBFB when clubb_ipdf_call_placement=2 (details)
817. implement esmt to samxx (details)
818. fix dmdf_write typo (details)
819. Add 2 degree mosart grid as option (details)
820. Add r2_r2 grid alias and r2 domain (details)
821. fix some VT implementation issues (details)
822. CIME submodule update (details)
823. Remove _ICG ocn/ice grids, instead cue off compset option SPUNUP (details)
824. Fix for aero_model when chem is none after phys namm change (details)
825. Hommexx: bug fix in RemapStateProvider (details)
826. Hommexx: test also tracers in remap_theta_ut (details)
827. Update mpas-source: Improved sea ice column error messages (details)
828. Change from keying off %SPUNUP to including SOI in compset longname (details)
829. I am altering P3 for SILHS by making changes equivalent to the (details)
830. Fix an issue that uses dcape related codes when ZM is not used (details)
831. Updates MPAS ocean and sea ice conditions (details)
832. Updates defaults for EC30to60 and WC14 (details)
833. update mpas-source: make ocean init mode optional (details)
834. Update E3SM bld scripts to reflect changes to the ocean Registry (details)
835. Remove the "-1900" grids as a mechanism for designating different ICs (details)
836. I am exporting the fields from P3 microphysics that are necessary (details)
837. Add default layouts for G-cases using EC30to60 on anvil/chrysalis/compy (details)
838. Add domain file for r2 (details)
839. update mpas-source: Fix core_ocean submodule checks in cmake (details)
840. for chrsyalis: initial set of PE layouts for RRMv2 (details)
841. Update default ne30-WC pelayout (details)
842. Default to a 60-node pelayout (details)
843. Update cray-specific flags (details)
844. Update FFLAGS and rename abort redeclarations (details)
845. Update cray modules (details)
846. unifies WC14 and EC30to60 del2 and del4 (details)
847. Fix an issue in nudging code (details)
848. Update mpas-ocean: Fixes shortwave absorption for shallow cells (details)
849. Allow time:point cell method (details)
850. update mpas-source: Simplify computing landIcePressure and vertical grid in ocean init mode (details)
851. Made changes necessary for CLUBB-SILHS-P3 to compile. (details)
852. Replace "+=" for grid related settings with "=" (details)
853. Update mpas-source: seaice regional stats bug (details)
854. eam h0 units CF compliance (details)
855. Allow standard_name on variable in EAM (details)
856. Add standard_names to some EAM output variables (details)
857. Add dummy args to the call of aircraft_emit_init for the crm version. (details)
858. Add more CMIP attributes (details)
859. Additional changes to crm/physpkg.F90 made to cam/physpkg.F90 in this PR (details)
860. Fix an issue in nudging code (details)
861. update to topo generation tool (details)
862. improve omp reduction (details)
863. fix incorrect comment (details)
864. remove SHARED omp directive (details)
865. Add optional pattern matching for SOI in compset names (details)
866. Remove some use_case files not used in v2 (details)
867. Fix standard_name for  TGCLDCWP TGCLDLWP (details)
868. Add standard_names for FLUT, SWCF, LWCF, PRECC, PRECT (details)
869. Add ability to pass standard_name when defining history (details)
870. Remove standard_names for PRECC, PRECT, FLUT (details)
871. Make sure standard_name is output (details)
872. update mpas-source: Add Wright (1997) equation of state (details)
873. Update CIME submodule (details)
874. Cleanup of unused compsets and grids for v2 (details)
875. Update bld scripts to match changes in ocean core Registry (details)
876. Updated for my changes so far to run P3. (details)
877. Add and update global attributies (details)
878. Add a couple of standard names (details)
879. Fix CF units and change spval (details)
880. Put back use_case 1850_cam5_av1c-04p2 to avoid diff of A_WCYCL1850 tests (details)
881. Update MOSART output for CF and CMIP (details)
882. Restore accidentally removed compset FSCM5A97 (details)
883. Update mpas-source: pgi syntax fix (details)
884. Run CircleCI on master branch only (details)
885. update mpas-source: Removes shortwave energy conservation fix (details)
886. Remove 1950 and 2010 specific build-config entries (details)
887. Restore spval and fillvalue to 1.e36 (details)
888. Update mpas-ocean bld scripts to match changes to Registry (details)
889. Reorder check for bgc and spunup options to get the correct ICs (details)
890. update mpas-source: Fixes missing edgeSignOnCell in redi_term2 (details)
891. Run CircleCI on all branches (details)
892. Updates WC14 and EC30to60 initial conditions (details)
893. Get verbose output from case.build in CircleCI test (details)
894. Corrected the name for  compset alias F-EAM-RCEMIP (details)
895. update mpas-source: framework update (details)
896. Remove redundant compy G-case layout, use previous layout for new grid (details)
897. More changes for running CLUBB-SILHS with P3 ... (details)
898. update mpas-source: stand-alone makefile addition (details)
899. update mpas-source: stand-alone ocean output to single precision (details)
900. Trying to get CLUBB-SILHS-P3 to run (details)
901. update mpas-source: Simplifies the shortwave fixer formulation (details)
902. Add bottomLayerShortwaveTemperatureFlux to timeSeriesStatsMonthlyOutput stream (details)
903. Enable shortwave_energy_fixer by default (details)
904. make vtheta_thresh a namelist variable (details)
905. typo (details)
906. improve comments (details)
907. update mpas-source: sediment transport design document (details)
908. update mpas-source: cleanup of ocean split-explicit driver (details)
909. adjust constant (details)
910. Updating to Scorpio version 1.2.0 (details)
911. Update mpas-source: init mode case (details)
912. I have edited the P3 interface in an attempt to get everything working. (details)
913. I updated the checkout of scorpio so we'd have a bug fix. (details)
914. With these changes to some of the code in SILHS, CLUBB-SILHS-P3 finally runs to completion!! (details)
915. Edited so that the code still works with MG microphysics. (details)
916. I officially updated the code to read in version 4.1.1 of the P3 lookup tables. (details)
917. Fixed the memory bug. (details)
918. We made some code changes to get these runs in Issue 36, https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272. 1) shut off the detrainment scheme in clubb_intr.F90, 2) reduce v_qit=v_nit by 2 in micro_p3.F90 (details)
919. NGD_wP3.csh is the new script for Issue 36, https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272. (details)
920. C_invrs_tau_N2_wpxp_thresh = 2.3 for run D in Issue 36,https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272. (details)
921. Getting rid of uninitialized memory when P3 is used. (details)
922. Additional correction to go along with the previous commit. (details)
923. Update micro_p3.F90 (details)
924. I am officially committing the official fix to the memory bug that (details)
925. The path to cime in .gitmodules was not correct. (details)
926. Mopping up after the recent merge of the master. This version of the code actually runs now ... (details)
927. Adding F2010SC5-P3 compset (details)
928. Add CO2 mixing ratio to be consistent with CMIP6 compset (details)
929. Add run script for Compy; ne120 cld_macmic_num_steps = 6 (details)
930. Comment-out the explicit physical setting that are applied through the compset (details)
931. Add/remove IC for run script (details)
932. Removing gibberish added during the most recent cherry-pick merge. (details)
933. Adding the KK-2000/Accretion tuning params (details)
934. P3 + Cooper; Adding new flag to control the usage of Cooper scheme, while disable the Meyers scheme in <nucleate_ice.F90> (details)
935. Committing new runscripts (details)
936. Removing the setting of CLUBB stats output variables from the runscript (details)
937. Updated run script (details)
938. I am committing some small changes to my 1 degree run scripts. (details)
939. I added "seasonally continuous" and "seasonally discontinuous" functionality (details)
940. I am adding the run script for quarter degree production runs. (details)
941. I updated the version of CLUBB and SILHS to version b0feee8 from May 27, 2021. (details)
942. A by-hand redo of commit 814dc04 to the clubb_silhs_devel branch on Feb 4, 2021. (details)
943. This is a hand-merge of commit 9b7b8b6 to the clubb_silhs_devel branch on March 15, 2021. (details)
944. This is a hand re-do of commit e708e6e to the clubb_silhs_devel branch (details)
945. This is a by-hand redo of commit 2f1647c to the clubb_silhs_devel branch (details)
946. A by-hand redo of commit b4fd9aa to the clubb_silhs_devel branch from (details)
947. This is a by-hand cherry-pick of commit 0af8b9a (to the clubb_silhs_devel (details)
948. I am committing a by-hand cherry-pick of commit f3d5061 that was made to the (details)
949. I am committing a by-hand cherry-pick of revision 1f63abb from April 29, 2021, (details)
950. This is a by-hand cherry-pick of commit 853a408 from May 4, 2021, which (details)
951. I am committing a by-hand cherry-pick of commit 85ff2e6 from May 4, 2021, (details)
952. I am committing a by-hand cherry-pick of commit 33d4507 from May 4, 2021, (details)
953. I am committing a by-hand cherry-pick of commit 3482c3a from March 7, 2021, (details)
954. This by-hand cherry-pick is actually 2 cherry-picks for the price of 1!!! (details)
955. I am committing a by-hand cherry-pick of commit ad5378e from May 12, 2021, which (details)
956. Changing clubb_up2_vp2_factor to clubb_up2_sfc_coef to correspond with (details)
957. I am changing some of the run scripts to reflect a recent name change in CLUBB. (details)
958. I am updating runscripts based on a recent name change in CLUBB, where (details)
959. Fixed some whoopsies (details)
960. I am fixing the bug that reorded the column/subcolumn indices in state_sc. This (details)
961. I changed the tolerance on the snow balance error check in the land module (details)
962. Add module load per5-extras for cori machines (details)
963. P3 update and new compsets for AMIP simulations (details)
964. Add simplied v2 run script template run.F20TR-P3.template.sh (details)
965. Change pe-layout to 64x2 on 338 nodes for ne120 on cori-knl (details)
966. Fixed a typo and commented out a line to get the code to compile and run! (details)
967. Updated to use the correct finidat and fsurdat for a 0.25 degree production run. (details)
968. This run repeat the [simulation](https://github.com/larson-group/e3sm/issues/36#issuecomment-881690516). Parameters setting is suggested by the tunner. (details)
969. Update the Machine files for Anvil. Issue #36. (details)
970. Make two different production run files for the 0.25 degree simulations: (details)
971. Update NGD_wP3_1deg_prod_run.csh (details)
972. Update micro_p3.F90 (details)
973. Readying scripts for production runs using the final tuning. (details)
974. Renaming the 1 degree production run script to specify use on Anvil. (details)
975. New file name (details)
976. Updated for new AMIP run script, plus updated stats on 1 deg run script. (details)
977. Removing the offensive ZM variables out of the fincl5 list, allowing (details)
978. Added a special runscript for AMIP sstplus4K (details)
979. Change the dang name! (details)
980. Update NGD_wP3_1deg_prod_run_anvil.csh (details)
981. Changing clubb_rainevap_turb to false. (details)
982. Removing finidat (initial condition files) for the AMIP runs, following (details)
983. Adding the runscript for the 25 month control run for aerosol production. (details)
984. Added the script for the active end of the Aerosol-Cloud Interaction (details)
985. I am adding Zhun's remap_ne30pg2.csh script to the remap directory. (details)
986. Fixed an error (details)
987. Add files via upload (details)
988. Committing temporary changes (details)
989. Update NGD_wP3_1deg_prod_run_anvil.csh (details)
990. Update NGD_wP3_1deg_AMIP_prod_run_anvil.csh (details)
991. Update NGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csh (details)
992. Update micro_p3.F90 (details)
993. Update NGD_wP3_1deg_F2010-CTL_prod_run_anvil.csh (details)
994. Update NGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.csh (details)
995. Update NGD_wP3_1deg_prod_sens.csh (details)
996. I am updating the version of CLUBB and SILHS used in E3SM to (details)
997. Made updates to both clubb_intr.F90 and subcol_SILHS.F90 in order (details)
998. I altered the nightly test run scripts to be consistent with what's (details)
999. Adding some additional files that need to be ported over from (details)
1000. Fixing compilation bugs. (details)
1001. Adding ifdef SILHS preprocessor flags around a conditional in subcol_SILHS.F90 (details)
1002. Added analyze_sensitivity_matrix.py to the diagnostic_v2_0 directory. (details)
1003. I am updating config_machines.xml and config_compilers.xml (details)
1004. Fixed the bug where clubb_params was reported to have parameters that (details)
1005. Change user namelist name from "user_nl_cam" to "user_nl_eam". (details)
1006. Change "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" (details)
1007. Change "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" (details)
1008. Change "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" (details)
1009. Updating the nelson's FFLAGS in config_compilers.xml (details)
1010. Revert "Updating the nelson's FFLAGS in config_compilers.xml" (details)
1011. I am committing a "manual cherry-pick" of git commit 1b238fe to the clubb_silhs_devel (details)
1012. Updating micro_p3_interface.F90 so that it compiles on Nelson with the gfortran compiler. (details)
1013. Adding w_up_in_cloud to the pbuf, which will eventually allow it to be ported (details)
1014. Adding statistical output for w_up_in_cloud (stat name W_UP_IN_CL_CLUBB). (details)
1015. The stat output for w_up_in_cloud should be on thermodynamic levels ('lev') (details)
1016. I am fixing some of the statistical output level listings for variable CLUBB (details)
1017. I am updating the nightly E3SM SCM scripts (for BOMEX, DYCOMS-II RF01, (details)
1018. Add arm_97 case to the Jenkins e3sm_run_gfortran_test (details)
1019. Updated the E3SM SCM runscript for ARM 97 for E3SM v2 code. (details)
1020. Updating the ARM 97 E3SM SCM run script so that it runs with (details)
1021. Getting rid of this hyper-annoying print statement. (details)
1022. I am updating the version of CLUBB and SILHS in the brand new future (details)
1023. Bringing the branch up-to-date with the changes that needed to be (details)
1024. I updated the version of CLUBB in the future clubb_silhs_devel branch to be (details)

Add harmonicAnalysisRestart stream

Adjust stream variables, after talking with Steve Brus.

Scripts changes corresponding to updated Registry

Populating the samxx code. It passes standalone tests.

Adding YAKL submodule

YAKL fix

Making it clear that cub is a library and defaulting it to the home directory. Getting rid of stale information from older README

Working toward adding -crm samxx as an option

samxx and yakl are building. Working through decoupling crm_physics and sam still.

Forgot to add params_kind.F90

The model builds with samxx on the CPU now

Changed sam/ interface to pass cam physics data in rather than accessing from sam/. samxx is still giving the wrong answer (evidenced by complaints in e3sm log). I need to find what's different between the tests and the runs

Working to get the samxx fortran baseline the same as the sam/ fortran code

Working to get the samxx fortran baseline the same as the sam/ fortran code

Working to get the samxx fortran baseline the same as the sam/ fortran code

Using original FFTs. standalone has machine precision similarity

Fix F-MMFXX compset

	modified:   components/cam/cime_config/config_component.xml
	modified:   components/cam/cime_config/config_compsets.xml
	modified:   components/cam/src/physics/crm/crm_physics.F90

Working on a hardwired approach to GPU for now. As always, CMake is a dumpster fire.

restricting new stuff to when gnugpu is used

CUDA build works currently. Simulation seems to run successfully. Answer looks good.

Add comments, wrap CUDA_FLAGS sm_70 in a test for the summit machine

Found a nicer way to specify CUDA and CUDA_FLAGS through config_compilers.xml

A change to how USE_CUDA is set to PARENT_SCOPE in CMakeLists.txt

Removing a few duplicate summit gnugpu entries in config_compilers.xml.   Also, moving the crm_ecpp_output_module.F90 file into sam and samxx separately. This breaks compilation, but I can't figure out why.

Fixing the compilation bug. samxx is no longer trying to compile crm_ecpp_output_module.F90 and is leavng it to the libatm.a build instead.

retabbing source files

Using clang-format on the C++ code in samxx

Revert "Using clang-format on the C++ code in samxx"

This reverts commit f0c52b92c7a33b9dd922be6edab8d9940ae9cfd3.