Changes

Eliminating l_apply_rule_to_pdf_params flag.
For ticket #926.
Results are BFB identical.

Removing incorrect name from COAMPS variable list

Eliminating l_ub_const_deriv flag.
For ticket #926.
Results are BFB identical.

Eliminating l_equation_21 flag.
For ticket #926.
Results are BFB identical

Adding additional ifort environment script to test to fix compile errors. larson-group/sys_admin#750

Adding ifort environment script to the compile step for all ifort scripts.

Eliminating l_wp3_2nd_buoyancy flag.
Code surrounding the flag is still present.
For ticket #926.
Results are BFB identical.

Updates to pyplotgen that will include all invrs_tau_* lines in a single plot, and also updates to prevent SAM and COAMPS lines from being plotted when those models will never have the variables being plotted.

Updates to include all invrs_tau_* variables in the output stats files, and pyplotgen updates to plot all of the invrs_tau_* variables on two separate plots along with the other "base" variables.

See #895.

Eliminating l_refine_grid_in_cloud and l_interactive_refined.
For ticket #926.
Results are BFB identical.

Updating the tuner README to clarify how the user should set the initmax values.

Eliminating l_use_experimental_term_pr2 and l_use_vert_avg_winds
For ticket #926
Results are BFB identical.

Updating run_tuner.bash so that it will run the tuner test cases with the initial tunable_parameters.in (i.e. before tuning) to make it easier to compare the optimized runs with the initial runs.  The initial runs are saved in a separate directory.

See #939.

Removing superfluous bash script commands.

Eliminating l_use_wp3_pr3 flag.
For ticket #926.
Results are BFB identical.

Eliminating l_clip_semi_implicit flag.
For ticket #926.
This commit is BIT_CHANGING due to how the flag needed to be removed.
More details on why this commit is bit changing can be seen on the ticket page.

Adding intent labels for subroutines throughout clubb.
Remaining files now have intent comments for subroutines.
Additionally, all lines are now less than 100 characters.
For ticket #942.
Results are BFB identical.

Replacing all mentions of /usr/local/les_and_clubb_benchmark_runs with the new/home/pub location. larson-goup/sys_admin#750

Updates to tuner script to prevent it from moving output files that have not been tuned.

See https://github.com/larson-group/clubb/issues/939#issuecomment-897755841.

BIT_CHANGING:af17ebf83826423f24165dab46ce098bf39444dd

Some new stats variables were added to standard_stats.in, thereby changing the output files, but presumably otherwise the fields are BFB.

RESOLVED:f24ca42ae8f1f83578ea85f378140abe0624c9c2

This change was BFB, but it wasn't merged in with the previous (bit-changing) commit.  Therefore, it undid the previous bit-changing commit, effectively causing a new change in bits.

RESOLVED:59a2fb4c73bfb290f8b857d1e89e4535fb76f73e

This commit merged in the original bit-changing commit, thereby redoing the bit changes, and producing another false bit change.