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Started by an SCM change Obtained jenkins_tests/sam_clubb_nvhpc_build/Jenkinsfile from git https://github.com/larson-group/sam_clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on condella in /home/jenkins/workspace/sam_clubb_nvhpc_build [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/sam_clubb.git > git init /home/jenkins/workspace/sam_clubb_nvhpc_build # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 098236edcd3beca68d595420f93746f139c7d03a (refs/remotes/origin/master) > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 098236edcd3beca68d595420f93746f139c7d03a # timeout=10 Commit message: "Autoupdated CLUBB_core Commit ef65d2727180b4c76d113cc0da1f6b5d4d3f1610 Author: bmg929 Date: Thu Jul 11 22:36:57 2024 -0500 This code in adj_low_res_nu was using the ghost point when grid_type = 2. This has now been changed to not include the ghost level. This code is BIT_CHANGING." > git rev-list --no-walk 3a5ba59e93df7a18da1558756104d3373b5fb2f5 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Edit Makefile) [Pipeline] sh + sed -i 's/CPPFLAGS += -DSILHS/#CPPFLAGS += -DSILHS/g' Makefile [Pipeline] sh + sed -i 's/CPPFLAGS += -DPNNL_STATS /#CPPFLAGS += -DPNNL_STATS /g' Makefile [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Default Case) [Pipeline] sh + sed -i 's/nstop.*/nstop = 6,/g' DYCOMS_RF02/prm [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop21-skylake_avx512/gcc-12.2.0/lmod-8.7.37-3552rvkhu4qfxfzyzb7zxriff2fncj6e ++ LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop21-skylake_avx512/gcc-12.2.0/lmod-8.7.37-3552rvkhu4qfxfzyzb7zxriff2fncj6e ++ source /usr/local/spack/opt/spack/linux-pop21-skylake_avx512/gcc-12.2.0/lmod-8.7.37-3552rvkhu4qfxfzyzb7zxriff2fncj6e/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop21-skylake_avx512/gcc-12.2.0/lmod-8.7.37-3552rvkhu4qfxfzyzb7zxriff2fncj6e/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core + module load nvhpc netcdf-fortran mpich + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod has detected the following error: The following module(s) are unknown: "glibc/2.33-3y65nib" Please check the spelling or version number. Also try "module spider ..." It is also possible your cache file is out-of-date; it may help to try: $ module --ignore_cache load "glibc/2.33-3y65nib" Also make sure that all modulefiles written in TCL start with the string #%Module Executing this command requires loading "glibc/2.33-3y65nib" which failed while processing the following module(s): Module fullname Module Filename --------------- --------------- netcdf-fortran/4.5.3 /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/nvhpc/24.3/netcdf-fortran/4.5.3.luaExecuting this command requires loading "glibc/2.33-3y65nib" which failed while processing the following module(s): Module fullname Module Filename --------------- --------------- netcdf-c/4.9.2 /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/nvhpc/24.3/netcdf-c/4.9.2.lua netcdf-fortran/4.5.3 /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/nvhpc/24.3/netcdf-fortran/4.5.3.luaExecuting this command requires loading "glibc/2.33-3y65nib" which failed while processing the following module(s): Module fullname Module Filename --------------- --------------- hdf5/1.14.3-nw3h7tl /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/nvhpc/24.3/hdf5/1.14.3-nw3h7tl.lua netcdf-c/4.9.2 /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/nvhpc/24.3/netcdf-c/4.9.2.lua netcdf-fortran/4.5.3 /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/nvhpc/24.3/netcdf-fortran/4.5.3.luaExecuting this command requires loading "glibc/2.33-3y65nib" which failed while processing the following module(s): Module fullname Module Filename --------------- --------------- mpich/4.2.1 /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/nvhpc/24.3/mpich/4.2.1.lua hdf5/1.14.3-nw3h7tl /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/nvhpc/24.3/hdf5/1.14.3-nw3h7tl.lua netcdf-c/4.9.2 /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/nvhpc/24.3/netcdf-c/4.9.2.lua netcdf-fortran/4.5.3 /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/nvhpc/24.3/netcdf-fortran/4.5.3.luaExecuting this command requires loading "glibc/2.33-3y65nib" which failed while processing the following module(s): Module fullname Module Filename --------------- --------------- mpich/4.2.1 /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/nvhpc/24.3/mpich/4.2.1.lua Shell debugging restarted + unset __lmod_sh_dbg + return 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run SAM) Stage "Run SAM" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + cat runsam.log cat: runsam.log: No such file or directory [Pipeline] echo SAM did not create a log. [Pipeline] sh + cp runsam.log /home/jenkins/test_logs/sam_clubb_nvhpc_build/ cp: cannot stat 'runsam.log': No such file or directory [Pipeline] } [Pipeline] // script Error when executing always post condition: Also: org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: 21d2d102-dc52-4599-be1f-101e51b3f6bd hudson.AbortException: script returned exit code 1 at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.handleExit(DurableTaskStep.java:668) at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.check(DurableTaskStep.java:614) at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.run(DurableTaskStep.java:555) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539) at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at java.base/java.lang.Thread.run(Thread.java:840) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE