![[Jenkins]](/jenkins/static/57c8a776/images/svgs/logo.svg){kind=logo}
Started by an SCM change Obtained jenkins_tests/e3sm_run_gfortran_test/Jenkinsfile from git https://github.com/larson-group/e3sm.git [Pipeline] Start of Pipeline [Pipeline] node Running on mitch in /home/jenkins/workspace/e3sm_run_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/e3sm.git > git init /home/jenkins/workspace/e3sm_run_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 2ff840062349e6f41bf60d02587ea404ed5e6df4 (refs/remotes/origin/clubb_silhs_devel) Commit message: "Autoupdated SILHS Commit 370b85fd1991810e0a1dec311f66ad10fa92275f Author: bmg929 Date: Wed Jul 17 23:42:18 2024 -0500 In my previous commit, I changed the domain of the maxloc commands in the computation of k_lh_start to check over the arrays from levels 2:nz. However, when that happens, the output will be offset by 1. Consider a situation where the rcm max is at level 2. By being passed 2 through nz only, maxloc will return a value of 1. I needed to add +1 to the output to rectify this issue. The results are BIT_CHANGING." > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 2ff840062349e6f41bf60d02587ea404ed5e6df4 # timeout=10 > git rev-list --no-walk f3139e197b4e5f48aea7a85689f098f472f4b248 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + rm -f '/home/jenkins/test_logs/e3sm_run_gfortran_test/*' + git submodule init Submodule 'cime' (https://github.com/ESMCI/cime.git) registered for path 'cime' Submodule 'cosp2' (git@github.com:CFMIP/COSPv2.0.git) registered for path 'components/eam/src/physics/cosp2/external' Submodule 'rrtmgp' (git@github.com:RobertPincus/rte-rrtmgp.git) registered for path 'components/eam/src/physics/rrtmgp/external' Submodule 'fates' (git@github.com:NGEET/fates.git) registered for path 'components/elm/src/external_models/fates' Submodule 'alm-mpp' (git@github.com:MPP-LSM/MPP.git) registered for path 'components/elm/src/external_models/mpp' Submodule 'sbetr' (git@github.com:BeTR-biogeochemistry-modeling/sbetr.git) registered for path 'components/elm/src/external_models/sbetr' Submodule 'components/mpas-source' (https://github.com/MPAS-Dev/MPAS-Model.git) registered for path 'components/mpas-source' Submodule 'externals/YAKL' (git@github.com:mrnorman/YAKL.git) registered for path 'externals/YAKL' Submodule 'externals/cub' (git@github.com:NVlabs/cub.git) registered for path 'externals/cub' Submodule 'externals/kokkos' (https://github.com/E3SM-Project/kokkos.git) registered for path 'externals/kokkos' Submodule 'externals/scorpio' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio' Submodule 'externals/scorpio_classic' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio_classic' + git submodule update Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/cime'... Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/cosp2/external'... git@github.com: Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:CFMIP/COSPv2.0.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/cosp2/external' failed Failed to clone 'components/eam/src/physics/cosp2/external'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/rrtmgp/external'... git@github.com: Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:RobertPincus/rte-rrtmgp.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/rrtmgp/external' failed Failed to clone 'components/eam/src/physics/rrtmgp/external'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/fates'... git@github.com: Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:NGEET/fates.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/fates' failed Failed to clone 'components/elm/src/external_models/fates'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/mpp'... git@github.com: Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:MPP-LSM/MPP.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/mpp' failed Failed to clone 'components/elm/src/external_models/mpp'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/sbetr'... git@github.com: Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:BeTR-biogeochemistry-modeling/sbetr.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/sbetr' failed Failed to clone 'components/elm/src/external_models/sbetr'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/mpas-source'... Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/YAKL'... git@github.com: Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:mrnorman/YAKL.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/YAKL' failed Failed to clone 'externals/YAKL'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/cub'... git@github.com: Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:NVlabs/cub.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/cub' failed Failed to clone 'externals/cub'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/kokkos'... Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/scorpio'... Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/scorpio_classic'... Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/cosp2/external'... git@github.com: Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:CFMIP/COSPv2.0.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/cosp2/external' failed Failed to clone 'components/eam/src/physics/cosp2/external' a second time, aborting [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Modify Run Scripts) Stage "Modify Run Scripts" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run BOMEX) Stage "Run BOMEX" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run DYCOMSrf01) Stage "Run DYCOMSrf01" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run RICO) Stage "Run RICO" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run ARM97) Stage "Run ARM97" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*.gz' gzip: projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*.gz: No such file or directory [Pipeline] echo Not all logs were made for BOMEX. [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.*.gz' gzip: projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.*.gz: No such file or directory [Pipeline] echo Not all logs were made for DYCOMSrf01. [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.*.gz' gzip: projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.*.gz: No such file or directory [Pipeline] echo Not all logs were made for RICO. [Pipeline] sh + cp 'projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*' 'projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*' 'projects/scratch/SCM_runs/test_BOMEX/run/e3sm.log.*' /home/jenkins/test_logs/e3sm_run_gfortran_test cp: cannot stat 'projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*': No such file or directory cp: cannot stat 'projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*': No such file or directory cp: cannot stat 'projects/scratch/SCM_runs/test_BOMEX/run/e3sm.log.*': No such file or directory [Pipeline] echo Not all logs were made for this test. [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE