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Started by GitHub push by bmg929 Obtained jenkins_tests/clubb_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 77ce77409e9da770515f66bbb50a869da74aca7d (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 77ce77409e9da770515f66bbb50a869da74aca7d # timeout=10 Commit message: "Commit to enforce a fixed-point boundary condition of wp3=0 at thermodynamic level k = 2, the first above-ground thermodynamic level." > git rev-list --no-walk 7a0ec8d6672de534c53569c0904ca034a0df627a # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_test_workspace/bit_diff_clubb_config ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/penta_lu_solver.F90:131:22: 131 | integer :: i, k, j ! Loop variables | 1 Warning: Unused variable ‘j’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/saturation.F90:1371:10: 1371 | rsat | 1 Warning: Unused variable ‘rsat’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/saturation.F90:852:8: 852 | use constants_clubb, only: & | 1 Warning: Unused parameter ‘ep’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/saturation.F90:877:16: 877 | integer :: i, k ! Loop indices | 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/saturation.F90:877:19: 877 | integer :: i, k ! Loop indices | 1 Warning: Unused variable ‘k’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/saturation.F90:1072:32: 1072 | subroutine sat_vapor_press_ice( nz, ngrdcol, T_in_K, & | ^ Warning: ‘sat_vapor_press_ice’ defined but not used [-Wunused-function] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/lapack_wrap.F90:239:16: 239 | subd, diag, supd | 1 Warning: Unused variable ‘diag’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/lapack_wrap.F90:239:10: 239 | subd, diag, supd | 1 Warning: Unused variable ‘subd’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/lapack_wrap.F90:239:22: 239 | subd, diag, supd | 1 Warning: Unused variable ‘supd’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/matrix_solver_wrapper.F90:546:16: 546 | integer :: i | 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/matrix_solver_wrapper.F90:438:16: 438 | integer :: i | 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/matrix_solver_wrapper.F90:224:16: 224 | integer :: i | 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/matrix_solver_wrapper.F90:167:24: 167 | old_soln, & ! Intent(in) | 1 Warning: Unused dummy argument ‘old_soln’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/matrix_solver_wrapper.F90:165:26: 165 | solve_name, penta_solve_method, & ! Intent(in) | 1 Warning: Unused dummy argument ‘solve_name’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/matrix_solver_wrapper.F90:106:16: 106 | integer :: i | 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/matrix_solver_wrapper.F90:50:24: 50 | old_soln, & ! Intent(in) | 1 Warning: Unused dummy argument ‘old_soln’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/matrix_solver_wrapper.F90:48:26: 48 | solve_name, penta_solve_method, & ! Intent(in) | 1 Warning: Unused dummy argument ‘solve_name’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:2237:8: 2237 | use clubb_precision, only: & | 1 Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1887:38: 1887 | real( kind = core_rknd ) :: factor | 1 Warning: Unused variable ‘factor’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1360:8: 1360 | use constants_clubb, only: & | 1 Warning: Unused parameter ‘fstdout’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1356:8: 1356 | use model_flags, only: & | 1 Warning: Unused parameter ‘l_cubic_interp’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1356:8: 1356 | use model_flags, only: & | 1 Warning: Unused module variable ‘l_quintic_poly_interp’ which has been explicitly imported at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1312:8: 1312 | use constants_clubb, only: & | 1 Warning: Unused parameter ‘fstdout’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1308:8: 1308 | use model_flags, only: & | 1 Warning: Unused parameter ‘l_cubic_interp’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1308:8: 1308 | use model_flags, only: & | 1 Warning: Unused module variable ‘l_quintic_poly_interp’ which has been explicitly imported at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1208:8: 1208 | use constants_clubb, only: & | 1 Warning: Unused parameter ‘fstdout’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1204:8: 1204 | use model_flags, only: & | 1 Warning: Unused parameter ‘l_cubic_interp’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1204:8: 1204 | use model_flags, only: & | 1 Warning: Unused module variable ‘l_quintic_poly_interp’ which has been explicitly imported at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1162:8: 1162 | use constants_clubb, only: & | 1 Warning: Unused parameter ‘fstdout’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1158:8: 1158 | use model_flags, only: & | 1 Warning: Unused parameter ‘l_cubic_interp’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/grid_class.F90:1158:8: 1158 | use model_flags, only: & | 1 Warning: Unused module variable ‘l_quintic_poly_interp’ which has been explicitly imported at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/parameters_tunable.F90:440:19: 440 | integer :: k, i ! loop variable | 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2096:32: 2096 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] Assembler messages: Fatal error: can't create precipitation_fraction.o: No such file or directory make[1]: *** [Make.clubb_param:132: precipitation_fraction.o] Error 1 make[1]: *** Waiting for unfinished jobs.... Assembler messages: Fatal error: can't create stats_zm_module.o: No such file or directory make[1]: *** [Make.clubb_param:164: stats_zm_module.o] Error 1 Assembler messages: Fatal error: can't create parameters_tunable.o: No such file or directory make[1]: *** [Make.clubb_param:120: parameters_tunable.o] Error 1 Assembler messages: Fatal error: can't create pdf_parameter_module.o: No such file or directory make[1]: *** [Make.clubb_param:124: pdf_parameter_module.o] Error 1 Assembler messages: Fatal error: can't create stats_zt_module.o: No such file or directory make[1]: *** [Make.clubb_param:166: stats_zt_module.o] Error 1 make: *** [Makefile:14: libclubb_param.a] Error 2 mkdir: cannot create directory ‘repo/output’: No such file or directory =============================== Configuring Test =============================== Working directory set to: /home/jenkins/clubb_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/clubb_bit_diff_test_workspace/repo Output Save Mode: none Using branch: master Making list from 'UnresolvedCommits': - 6a1ad520c171e5f5eb8cc1c590e1405459574dd6 Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', 'rm -rf repo/output', 'mkdir repo/output', 'repo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: 7b2313fdf3b27db1521bac1facbbc9e595a729df Parsing message from commit: 77ce77409e9da770515f66bbb50a869da74aca7d Found: BIT_CHANGING Checking Commit: 7b2313fdf3b27db1521bac1facbbc9e595a729df Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 77ce77409e9da770515f66bbb50a869da74aca7d Checking out 7b2313fdf3b27db1521bac1facbbc9e595a729df Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' ================== ERROR ================== Commit: 7b2313fdf3b27db1521bac1facbbc9e595a729df Unexpected error: [Errno 2] No such file or directory: 'repo/run_scripts/run_scm_all.bash' There was a problem with a run command. =========================================== System Exit detected. Calling test.cleanup() =============================== Cleanup =============================== Removed repo. Removing all generated output Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE