Changes

Summary

1. build script mods to allow se builds (details)
2. se scam update (details)
3. bfb mods (details)
4. se scm updates to cmeps cdeps externals (details)
5. scam updates (details)
6. external updates for scam_dev 6_3_136 (details)
7. missed cice external update for scam (details)
8. scam se update (details)
9. Initial add of moving mountain GW source (details)
10. start with basics (details)
11. scam se updates (details)
12. module based method, sparse working (details)
13. now works two ways (details)
14. complete the tools (details)
15. worked on outputs (details)
16. worked more on outputs (details)
17. more fixes (details)
18. submodule needs path not name (details)
19. improve error checking (details)
20. add more logging (details)
21. submodule always usees shell (details)
22. fix toplevel (details)
23. fix toplevel (details)
24. try again (details)
25. add command line options and support for update (details)
26. fix new issues (details)
27. update esmrequired variable (details)
28. fix recursive issue (details)
29. add status flag support (details)
30. add a gitmodules class (details)
31. now renamed git-fleximod for git interface (details)
32. clean up and refactor, rename to git-fleximod (details)
33. add version.txt and .pre-commit-config.yaml (details)
34. fix issue in update (details)
35. make action a required subargument to look more like a git subcommand (details)
36. add documentation (details)
37. add README and License (details)
38. update README (details)
39. trying to improve markdown formatting (details)
40. trying to improve markdown (details)
41. trying to improve markdown (details)
42. trying to improve markdown (details)
43. add pip setup.py file (details)
44. bug fix (details)
45. improve messages (details)
46. fix some issues in sparse checkout (details)
47. need to replace ssh with https (details)
48. change from ssh to https (details)
49. fix ssh issue (details)
50. remove debug print statments (details)
51. fix issue with sparse checkout (details)
52. more error checking (details)
53. hack to prevent file corruption (details)
54. ignore untracked files in submodules (details)
55. scam clean and updates for derecho (details)
56. a better solution to the file coruption issue (details)
57. awkward solution for ssh urls (details)
58. remove debug print statements (details)
59. update for distribution (details)
60. fix error with version flag (details)
61. update version to 0.1.4 (details)
62. fix issues with rerunning (details)
63. update setup.py (details)
64. update version (details)
65. geometry works (details)
66. provide more info for status of uninstalled submodules (details)
67. add test action (details)
68. bug fix for iopTimeIdx when iop step size is smaller than model timestep (details)
69. PR updates for Cheryl and Jim (details)
70. fix issue with status (details)
71. update version (details)
72. cleaner format for status output, fix for special handling of ssh submodules, fix for 0 length log (details)
73. check for permission in fleximod.log file (details)
74. fix issue with ssh submodule checkout (details)
75. add --force option and cowardly refusal (details)
76. start at root git dir unless --path flag is used (details)
77. remove test from visable options (details)
78. update setup.cfg (details)
79. updates for setup.py (details)
80. setup.cfg (details)
81. pointing to the better solution (details)
82. minimal changes required (details)
83. updates to setup.cfg (details)
84. minor changes (details)
85. fix syntax and new function name (details)
86. names were too similar, force needs to be optional (details)
87. more cleanup (details)
88. pre-commit cleanup (details)
89. setup.py builds manpage but doesnt install (details)
90. update version (details)
91. update README (details)
92. add support for fxhash variable in .gitmodules (details)
93. working on poetry (details)
94. more poetry and sphinx (details)
95. Bump to 0.5.0 (details)
96. reformed to work with poetry (details)
97. add a simple import test (details)
98. now includes man pages (details)
99. update tbump path (details)
100. Bump to 0.6.0 (details)
101. fix issue with hyphen (details)
102. Bump to 0.6.1 (details)
103. fix issue with sparse checkout dir path (details)
104. Bump to 0.6.2 (details)
105. add tests (details)
106. add pytest to workflow (details)
107. add pytest to workflow (details)
108. add pytest fixtures (details)
109. all working (details)
110. clean up and combine tests (details)
111. all tests passing (details)
112. thought it was working?? (details)
113. test_complex is still a work in progress (details)
114. update should checkout if needed (details)
115. restructure of tests working (details)
116. all tests are passing and complete (details)
117. add git user info to tests (details)
118. remove checkout user option (details)
119. remove fxhash, putting hash in tag works fine (details)
120. update version (details)
121. add translater from manage_externals (details)
122. check for error with mpi_bcast calls (details)
123. update README and improve me2flexi (details)
124. correcting version (details)
125. Bump to 0.7.0 (details)
126. code cleanup (details)
127. PR requested updates (details)
128. compile catch/fix for se_single_column_mod (details)
129. shorten a few long lines >132 (details)
130. bugfix for new minloc replacement for loop with exit (details)
131. update ice external tag (details)
132. dont need these cdep mods (details)
133. update cleanup (details)
134. update cleanup (details)
135. all tests passing (details)
136. more cleanup and comments (details)
137. fix py3.11 issue in gitinterface (details)
138. explain M flag (details)
139. fixes issue with ssh access to github (should not be required) (details)
140. better error handling for not a tag (details)
141. Bump to 0.7.3 (details)
142. set python 3.7 as min version requirement (details)
143. mods to limit COSP top (details)
144. rename fxurl (details)
145. fix tests on izumi (details)
146. fix issue in metoflexi (details)
147. mods to limit COSP top (details)
148. add coordinate trop_pref (details)
149. cosp outputs use new vertical coords as appropriate (details)
150. merge cam/physpkg.F90 changes to cam_dev/physpkg.F90 (details)
151. address compiler messages for cospsimulator_intr (details)
152. fix interface height and pressure inputs (details)
153. add ChangeLog (details)
154. fix for restart with COSP (details)
155. remove old topo file generation tools (details)
156. update ChangeLog (details)
157. PR updates for Jesse (details)
158. PR updates (details)
159. PR updates (details)
160. initial changes (details)
161. if submodule does not exist add it (details)
162. create parent if it doesnt exist (details)
163. Bump to 0.7.4 (details)
164. change cam_dev to cam7 (details)
165. workaround so that sct works on derecho (details)
166. Bring in fix for SCT (but breaks derecho test until ccs_config_cesm0.0.99 is brought in (details)
167. dadadj ccpp updates (details)
168. use temporary cmep external for testing (details)
169. working version - fallback (details)
170. make cam7 physics directory; allow 32 level cam7; up wallclock limits (details)
171. implement geometric hght function; set interface and mid-layer heights (details)
172. some cleanup (details)
173. Hanli's fix for DTVKE (details)
174. Update Externals_CAM to point to my new atmos_phys branch - will need to redirect this to the tagged version (details)
175. increase wallclock limit (details)
176. start ChangeLog (details)
177. add allocate stat checks; add some comments (details)
178. update ChangeLog (details)
179. Update externals to match cesm2_3_alpha17f (details)
180. put back in MCT since makefile mods would be required (details)
181. update documentation (details)
182. Increase wall clock times (details)
183. PR updates (details)
184. revert times back for regression tests to original times (details)
185. ChangeLog for cam6_3_161 (details)
186. Update externals to match cesm2_3_alpha17f (details)
187. put back in MCT since makefile mods would be required (details)
188. Increase wall clock times (details)
189. revert times back for regression tests to original times (details)
190. ChangeLog for cam6_3_161 (details)
191. remove the casper test suites (details)
192. add GPU test suite on Derecho (details)
193. replaced L93 ncdata files w/ corrected versions (details)
194. respond to review comments (details)
195. swithc ERP to ERS test as nvhpc seems to have a bug with openmp (details)
196. improve performance of rh file write (details)
197. fix typo in comment (details)
198. fix buildcpp to return configure error messages (details)
199. fix SE specific treatment of subcolumns in check_energy (details)
200. add submodules (details)
201. update externals, waiting for clm tag (details)
202. remove manage externals (details)
203. using clm branch (details)
204. Squashed '.lib/git-fleximod/' content from commit 94121295 (details)
205. update hemco external (details)
206. remove solar_htng_spctrl_scl from cam5/6 aquaplanet use case files (details)
207. change dir name from dadadj to dry_adiabatic_adjust and make sure new name is in Filepath (details)
208. update find_root_dir to work with git worktree (details)
209. return str not Path (details)
210. Bump to 0.7.5 (details)
211. Squashed '.lib/git-fleximod/' changes from 94121295..a354b052 (details)
212. update fv3 interface (details)
213. update externals (details)
214. update ctsm external (details)
215. some fixes when modifying url (details)
216. Bump to 0.7.6 (details)
217. remove git-fleximod (details)
218. update externals (details)
219. update hemco tag (details)
220. Update README.md with directions about git-fleximod (details)
221. Add details to README.md and add script for manage_externals/checkout_externals (details)
222. Update TGIT test to check for .gitmodules (details)
223. PR update to err message for convergence failure (details)
224. fix CLUBB interface bug (details)
225. Update chem_proc tag with one with .gitignore in it (details)
226. update complex test (details)
227. update chem_proc external (details)
228. fix status issue (details)
229. one more improvement (details)
230. update tests (details)
231. fix clubb_l_do_expldiff_rtm_thlm default values (details)
232. start ChangeLog entry (details)
233. fixed dims on movmtn table lookup read (details)
234. Bump to 0.7.7 (details)
235. update ChangeLog for cam6_3_162 (details)
236. add optional to status output (details)
237. remove manage_externals error (details)
238. fix spelling (details)
239. add temporary CMEPS tag (details)
240. components/cmeps updated (details)
241. update CICE external (details)
242. Bump to 0.7.8 (details)
243. fixes for regression tests (details)
244. fixes for regression tests (details)
245. Fix array bound mismatches (details)
246. refactor set_wet_to_dry/set_dry_to_wet (details)
247. update ChangeLog (details)
248. update CMEPS submodule (details)
249. initialize snapshot outfld fields to 0 in tphysac and tphysbc (details)
250. update to cam6_3_162 w git-fleximod (details)
251. update fv3 submodule (details)
252. Update bld/namelist_files/namelist_defaults_cam.xml (details)
253. Update bld/namelist_files/namelist_defaults_cam.xml (details)
254. Update bld/namelist_files/namelist_defaults_cam.xml (details)
255. Update bld/namelist_files/namelist_defaults_cam.xml (details)
256. implement climate chemistry compset (details)
257. add use case file (details)
258. Updates for the new external (details)
259. Introduce GW namelist options (details)
260. remove Vmct test (details)
261. udpates for supporting GPU testing (details)
262. update ChangeLog (details)
263. address review comments (details)
264. dependabot changes and issue #48 (details)
265. add code of conduct (issue #35) (details)
266. use poetry update to update poetry.lock file (details)
267. Bump to 0.7.9 (details)
268. remove gridded component code from waccmx -- not needed with nuopc mediator (details)
269. set rxn_rate_sums default for WACCMX-mad (details)
270. remove zm hist fields from waccmx_ma_2000_cam4 on unstruct grids (details)
271. add comment (details)
272. fix the path to fms for fv3 build, remove mct reference (details)
273. Updating clubb submodule (details)
274. add multi-inst test; fix usecase (details)
275. aerosol wet removal fixes (details)
276. change HB diffusion in CAM7 to only be active for Ri<0 + stability mods for dycore (details)
277. update ChangeLog (details)
278. add Changelog (details)
279. update Changelog for commit (details)
280. another Changelog update for commit (details)
281. another Changelog update for commit (details)
282. No frictional heating in del4 sponge (SE dycore) (details)
283. update Changelog (details)
284. ChangeLog draft (details)
285. ChangeLog update (details)
286. ChangeLog update (details)
287. address review comments (details)
288. fix misplaced USE_COSP ifdef (details)
289. Final round of initial cleanup (details)
290. update ChangeLog (details)
291. all pytests passing (details)
292. Added DOI for ref in gw_movmtn.F90 (details)
293. Minor format change (details)
294. updates to user rxtns for tagged co; set rxn_rate_sums (details)
295. update ChangeLog (details)
296. low res IC and izumi test (details)
297. update ChangeLog (details)
298. set flbc options in use case file, rxn_rate_sums in namelist_defaults (details)
299. Turn on GW Moving Mountain by default for cam7 runs (details)
300. initial pbuf water path fields to zero for cloud optics (details)
301. test_b_update now working (details)
302. add the new submodule class (details)
303. add documentation to submodule.py (details)
304. tests a-d all pass (details)
305. all pytests now passing (details)
306. all tests passing, issue #50 fixed (details)
307. now working with issue #50 (details)
308. no need to make submodule objects persist (details)
309. update test list (details)
310. Bump to 0.8.0 (details)
311. initialize water paths to zero only on startup runs (details)
312. update .gitmodules (details)
313. update to share1.1.2 (details)
314. Switch log-gamma call to a Fortran 2008 intrinsic (details)
315. update to cmeps1.0.0 (details)
316. better fix for issue with ssh access (details)
317. submodule diffs (details)
318. Bump to 0.8.1 (details)
319. remove bfb line for testing (details)
320. cam6_4_007: CCPP-ized TJ2016 (#1070) (details)
321. Add missing commit for src/atmos_phys from previous tag (details)
322. update to fetch tag first (details)
323. Bump to 0.8.2 (details)
324. Update atmos_phys submodule for some reason (details)
325. include megan emissions settings (details)
326. ChangeLog for cam6_4_008 (details)
327. include transient solar input file (details)
328. generalized aerosol fluxes to surface with bulk dust rebin (details)
329. update cam to match atmos_phys changes in dadadj (return heating rate in ptend%s) (details)
330. Updated ChangeLog in advance of cam6_4_009 tag (details)
331. Cleanup changes due to code review (details)
332. update directories (details)
333. Add GPU tests on derecho (details)
334. add allocate error checks (details)
335. update submodules to cesm3_0_alpha02a (details)
336. update submodule directories (details)
337. start ChangeLog entry (details)
338. additional review comments addressed (details)
339. Add comment for clubb_intr (details)
340. update ChangeLog (details)
341. update ChangeLog (details)
342. update externals (details)
343. addressed CS and CS1 variables and outputs (details)
344. Change index variables to be integers (details)
345. Use CAM4 BAM dust sizes; pass in aero_props from aero_model; misc cleanup (details)
346. Final ChangeLog for cam6_4_010 (details)
347. Change CAM7 runs to use CLM60 (details)
348. Add FHIST_BDRD test to prealpha (details)
349. Revert back testlist (details)
350. improve checks on number and mass fluxes to avoid divide by zero (details)
351. ChangeLog for cam6_4_011 (details)
352. add src/atmos_phys (details)
353. use CLM60 in the new FCts4MTHIST compset (details)
354. ChangeLog draft (details)
355. ChangeLog update (details)
356. ChangeLog draft (details)
357. ChangeLog update (details)
358. ChangeLog draft (details)
359. ChangeLog update (details)
360. revert #1043; update ChangeLog (details)
361. update ChangeLog (details)
362. dz fix in convproc (details)
363. mods to RRTMGP for MT configs (details)
364. update HEMCO in .gitmodules; start ChangeLog entry (details)
365. update ChangeLog (details)
366. update ChangeLog (details)
367. update git-fleximod to 8.4 and add fleximod-test workflow (details)
368. fix cice url in .gitmodules (details)
369. remove variable initialization, not necessary for bfb (details)
370. update gitmodules for new atmospheric_physics tag (details)
371. Addressing first review comments (details)
372. fix #1087 and #1103 (details)
373. A few more review comments (details)
374. Bug fixes (details)
375. update ChangeLog (details)
376. Update ChangeLog template to include nvhpc tests on Derecho (details)
377. add changelog (details)
378. Bug fix for runs where CLUBB_SGS is not defined (details)
379. remove ndep stream from aquaplanet and simple model runs (details)
380. cycle forcings over appropriate year (details)
381. PR updates: comments,typo, and replace hard coded length with shr_kind_cl (details)
382. remove drydep_srf_file for aquap runs on unstructured grids (details)
383. tweak a comment (details)
384. Update to new new new CLUBB external (_gpufix_PosInf) and new CDEPS (details)
385. Update to newest CDEPS tag cdeps1.0.45 (details)
386. Update ChangeLog with Derecho test results before machine goes down (details)
387. Final updates (details)
388. Add compiler name to derecho baseline directories (details)
389. ChangeLog draft (details)
390. ChangeLog update (details)
391. Remove 0.5*timestep logic from call to zm (details)
392. Update atmos_phys tag (details)
393. Update atmos_phys tag (details)
394. update ChangeLog and add back # to first line of test_driver.sh (details)
395. fix date of ChangeLog entry (details)
396. Remove project checks from issue-closing script. (details)
397. Fix comment to remove CAMDEN reference. (details)
398. Remove dt from call to ZM convtran (details)
399. ChangeLog for cam6_4_022 (details)
400. update cice and cdeps for regression failures,Changelog for PR,scam to use coldstart, restore ne30 defaults in pes configure (details)
401. need scam_mandatory to set COLDSTART until CLM scam mods tagged (details)
402. update mpace regression test and ChangeLog (details)
403. update ChangeLog, pull hvcoord addition (details)
404. update ChangeLog (details)
405. update ChangeLog (details)
406. add error checking and comments (details)
407. ChangeLog draft (details)
408. ChangeLog update (details)
409. Neglected to remove the 0.5*timestep call from zm_convr_run - done now (details)
410. ChangeLog update (details)
411. Add ChangeLog for cam6_4_026 (details)
412. update ctsm tag to ctsm5.2.027 (details)
413. ChangeLog draft (details)
414. ChangeLog update (details)
415. ChangeLog update (details)
416. Remove old clubb and sihls, update submodules (details)
417. Update copy script to new location (details)
418. Update configure script to match NCAR (details)
419. Autoupdated CLUBB_core (details)
420. Autoupdated SILHS (details)
421. Autoupdated CLUBB_core (details)
422. Making scripts work with new merge and making small tweaks to setup script. (details)
423. Changing error detection method. (details)
424. Bug fix (details)
425. Updating gpu run, ne5 seems broken. (details)
426. Bug fixes to jenkins scripts. (details)
427. Bug fixes to jenkins scripts. (details)

build script mods to allow se builds

se scam update

bfb mods

se scm updates to cmeps cdeps externals

scam updates

external updates for scam_dev 6_3_136

missed cice external update for scam

scam se update

Initial add of moving mountain GW source

start with basics

scam se updates

module based method, sparse working

now works two ways

complete the tools

worked on outputs

worked more on outputs

more fixes

submodule needs path not name

improve error checking

add more logging

submodule always usees shell

fix toplevel

fix toplevel

try again

add command line options and support for update

fix new issues

update esmrequired variable

fix recursive issue

add status flag support

add a gitmodules class

now renamed git-fleximod for git interface

clean up and refactor, rename to git-fleximod

add version.txt and .pre-commit-config.yaml

fix issue in update

make action a required subargument to look more like a git subcommand

add documentation

add README and License

update README

trying to improve markdown formatting

trying to improve markdown

trying to improve markdown

trying to improve markdown

add pip setup.py file

bug fix

improve messages

fix some issues in sparse checkout

need to replace ssh with https

change from ssh to https

fix ssh issue

remove debug print statments

fix issue with sparse checkout

more error checking

hack to prevent file corruption

ignore untracked files in submodules

scam clean and updates for derecho

a better solution to the file coruption issue

awkward solution for ssh urls

remove debug print statements

update for distribution

fix error with version flag

update version to 0.1.4

fix issues with rerunning

update setup.py

update version

geometry works

provide more info for status of uninstalled submodules

add test action

bug fix for iopTimeIdx when iop step size is smaller than model timestep

PR updates for Cheryl and Jim

fix issue with status

update version

cleaner format for status output, fix for special handling of ssh submodules, fix for 0 length log

check for permission in fleximod.log file

fix issue with ssh submodule checkout

add --force option and cowardly refusal

start at root git dir unless --path flag is used

remove test from visable options

update setup.cfg

updates for setup.py

setup.cfg

pointing to the better solution

minimal changes required

updates to setup.cfg

minor changes

fix syntax and new function name

names were too similar, force needs to be optional

more cleanup

pre-commit cleanup

setup.py builds manpage but doesnt install

update version

update README

add support for fxhash variable in .gitmodules

working on poetry

more poetry and sphinx

Bump to 0.5.0

reformed to work with poetry

add a simple import test

now includes man pages

update tbump path

Bump to 0.6.0

fix issue with hyphen

Bump to 0.6.1

fix issue with sparse checkout dir path

Bump to 0.6.2

add tests

add pytest to workflow

add pytest to workflow

add pytest fixtures

all working

clean up and combine tests

all tests passing

thought it was working??

test_complex is still a work in progress

update should checkout if needed

restructure of tests working

all tests are passing and complete

add git user info to tests

remove checkout user option

remove fxhash, putting hash in tag works fine

update version

add translater from manage_externals

check for error with mpi_bcast calls

update README and improve me2flexi

correcting version

Bump to 0.7.0

code cleanup

PR requested updates

compile catch/fix for se_single_column_mod

shorten a few long lines >132

bugfix for new minloc replacement for loop with exit

update ice external tag

dont need these cdep mods

update cleanup

update cleanup

all tests passing

more cleanup and comments

fix py3.11 issue in gitinterface

explain M flag

fixes issue with ssh access to github (should not be required)

better error handling for not a tag

Bump to 0.7.3

set python 3.7 as min version requirement

mods to limit COSP top

rename fxurl

fix tests on izumi

fix issue in metoflexi

mods to limit COSP top

add coordinate trop_pref

cosp outputs use new vertical coords as appropriate

merge cam/physpkg.F90 changes to cam_dev/physpkg.F90

address compiler messages for cospsimulator_intr

fix interface height and pressure inputs

add ChangeLog

fix for restart with COSP

remove old topo file generation tools

update ChangeLog

PR updates for Jesse

PR updates

PR updates

initial changes

	modified:   src/ionosphere/waccmx/ionosphere_interface.F90
	modified:   src/physics/waccmx/ion_electron_temp.F90

if submodule does not exist add it

create parent if it doesnt exist

Bump to 0.7.4

change cam_dev to cam7

workaround so that sct works on derecho

Bring in fix for SCT (but breaks derecho test until ccs_config_cesm0.0.99 is brought in

dadadj ccpp updates