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Started by an SCM change Obtained jenkins_tests/cam_ne5_gpu_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on mitch in /home/jenkins/workspace/cam_ne5_gpu_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_ne5_gpu_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision f71a1437455d331a142dd305e80a6c402008e756 (refs/remotes/origin/clubb_silhs_devel) Commit message: "Autoupdated CLUBB_core Commit 7e33d718280afab43dd3d8fcdc45f1c749ae7292 Author: domkesteffen Date: Thu Aug 29 13:33:02 2024 -0500 Ri_zm calc (Part 4) - Implementing calc_Ri_zm (#1160) * Ri_zm calc (Part 4) - Implementing calc_Ri_zm CLUBB tocket #1145" > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f f71a1437455d331a142dd305e80a6c402008e756 # timeout=10 > git rev-list --no-walk 432761245424477fab7613acd59ad4053e070e8e # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_cam_coarse_res.py . Checking out externals... Copying ccs_config files [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/ /home/jenkins/cam_output/caseroot/UWM_ne5_gpu_no_stats_larson-group_nvhpc/ [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Running ne5 with OpenACC) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh ----- Case Setup ----- Compset longname is 2000_CAM%DEV_CLM50%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_ne5_gpu_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM7 development physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_ne5_gpu_test/cime_config/config_pes.xml Machine is larson-group Pes setting: grid is a%ne5np4.pg3_l%ne5np4.pg3_oi%ne5np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is 2000_CAM%DEV_CLM50%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': -1, 'NTASKS_LND': -1, 'NTASKS_ROF': -1, 'NTASKS_ICE': -1, 'NTASKS_OCN': -1, 'NTASKS_GLC': -1, 'NTASKS_WAV': -1, 'NTASKS_CPL': -1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM%DEV_CLM50%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne5np4.pg3_l%ne5np4.pg3_oi%ne5np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-57-gf71a1437 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/UWM_ne5_gpu_no_stats_larson-group_nvhpc ERROR: Unknown Job Queue specified use --force to set Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_ne5_gpu_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_ne5_gpu_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/UWM_ne5_gpu_no_stats_larson-group_nvhpc sharedlib_only is False model_only is False Generating component namelists as part of build 2024-08-30 03:53:19 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_ne5_gpu_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_ne5_gpu_no_stats_larson-group_nvhpc/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/run/atm_in 2024-08-30 03:53:20 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_ne5_gpu_test/components/clm//cime_config/buildnml 2024-08-30 03:53:20 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_ne5_gpu_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_ne5_gpu_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_ne5_gpu_test -res ne5np4.pg3 -nx 1350 -ny 1 -nproc 1 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_ne5_gpu_no_stats_larson-group_nvhpc output: 1350 1 1350 1 1 roundrobin square-ice 2024-08-30 03:53:20 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_ne5_gpu_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2024-08-30 03:53:20 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_ne5_gpu_test/components/mosart//cime_config/buildnml 2024-08-30 03:53:20 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_ne5_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2024-08-30 03:53:20 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_ne5_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2024-08-30 03:53:20 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_ne5_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2024-08-30 03:53:20 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_ne5_gpu_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Building gptl with output to file /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/gptl.bldlog.240830-035319 Calling /home/jenkins/workspace/cam_ne5_gpu_test/cime/CIME/build_scripts/buildlib.gptl Building mct with output to file /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/mct.bldlog.240830-035319 Calling /home/jenkins/workspace/cam_ne5_gpu_test/cime/CIME/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/pio.bldlog.240830-035319 Calling /home/jenkins/workspace/cam_ne5_gpu_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/csm_share.bldlog.240830-035319 Calling /home/jenkins/workspace/cam_ne5_gpu_test/share/buildlib.csm_share Building CDEPS with output to file /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/CDEPS.bldlog.240830-035319 Calling /home/jenkins/workspace/cam_ne5_gpu_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/lnd.bldlog.240830-035319 clm built in 658.914493 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.240830-035319 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/ice.bldlog.240830-035319 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/ocn.bldlog.240830-035319 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/rof.bldlog.240830-035319 docn built in 0.533389 seconds cam built in 73.342011 seconds mosart built in 76.916507 seconds cice built in 157.566843 seconds ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.240830-035319 Error building CAM [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output/ [Pipeline] sh + gzip -d '/home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*.gz' gzip: /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*.gz: No such file or directory [Pipeline] echo Not all logs were compressed, this indicates a failure. [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE