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Started by user Gunther Huebler
Checking out git https://github.com/larson-group/cam.git into /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec to read jenkins_tests/cam_ne5_gpu_test/Jenkinsfile
The recommended git tool is: git
 > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -ffdx # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/katetc/merge_cam6_4_027^{commit} # timeout=10
Checking out Revision af9d0edbbeafc2da2d6a6ac50c775a0df1135d0e (refs/remotes/origin/katetc/merge_cam6_4_027)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f af9d0edbbeafc2da2d6a6ac50c775a0df1135d0e # timeout=10
Commit message: "Bug fix"
 > git rev-list --no-walk af9d0edbbeafc2da2d6a6ac50c775a0df1135d0e # timeout=10
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/branch_cam_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
 > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -ffdx # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/katetc/merge_cam6_4_027^{commit} # timeout=10
Checking out Revision af9d0edbbeafc2da2d6a6ac50c775a0df1135d0e (refs/remotes/origin/katetc/merge_cam6_4_027)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f af9d0edbbeafc2da2d6a6ac50c775a0df1135d0e # timeout=10
Commit message: "Bug fix"
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Externals and Copy Custom Files)
[Pipeline] sh
+ python run_scripts/set_up_repo.py .
Checking out externals...
Copying ccs_config files
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Remove Old Output)
[Pipeline] sh
+ rm -rf /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/ /home/jenkins/cam_output/caseroot/UWM_ne5_gpu_no_stats_larson-group_nvhpc/
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Running ne5 with OpenACC)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh
----- Case Setup -----
Compset longname is 2000_CAM70_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam7 physics:
LND component is clm6.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN   prescribed ocean mode
ROF component is MOSART: MOdel for Scale Adaptive River Transport
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes     specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_pes.xml
Machine is larson-group
Pes setting: grid          is a%ne5np4.pg3_l%ne5np4.pg3_oi%ne5np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 
Pes setting: compset       is 2000_CAM70_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP 
Pes setting: tasks       is {'NTASKS_ATM': -1, 'NTASKS_LND': -1, 'NTASKS_ROF': -1, 'NTASKS_ICE': -1, 'NTASKS_OCN': -1, 'NTASKS_GLC': -1, 'NTASKS_WAV': -1, 'NTASKS_CPL': -1} 
Pes setting: threads     is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} 
Pes setting: rootpe      is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} 
Pes setting: pstrid      is {} 
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
 Compset is: 2000_CAM70_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP 
 Grid is: a%ne5np4.pg3_l%ne5np4.pg3_oi%ne5np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 
 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] 
No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-626-gaf9d0edb
Batch_system_type is none
 Creating Case directory /home/jenkins/cam_output/caseroot/UWM_ne5_gpu_no_stats_larson-group_nvhpc
ERROR: Unknown Job Queue specified use --force to set
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Compile -----
Building case in directory /home/jenkins/cam_output/caseroot/UWM_ne5_gpu_no_stats_larson-group_nvhpc
sharedlib_only is False
model_only is False
Generating component namelists as part of build
  2024-09-24 13:51:15 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml
     ...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_ne5_gpu_no_stats_larson-group_nvhpc/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/run/atm_in 
  2024-09-24 13:51:15 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml
ERROR: Command /home/jenkins/workspace/branch_cam_test/components/clm/bld/build-namelist failed rc=255
out=
err=ERROR : CLM build-namelist::CLMBuildNamelist::add_default() : No default value found for fsurdat.
            Are defaults provided for this resolution and land mask?
Error building CAM
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output/
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*.gz: No such file or directory
[Pipeline] echo
Not all logs were compressed, this indicates a failure.
[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE