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Started by user Peter Roels Checking out git https://github.com/larson-group/cam.git into /home/jenkins/workspace/branch_cam_test@script/71f15c22b3a1d2ce6c8b7577b690aa20e5cffe970be3a6dbbc5cdd6686abd239 to read jenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfile The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test@script/71f15c22b3a1d2ce6c8b7577b690aa20e5cffe970be3a6dbbc5cdd6686abd239/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision 67c9deaaabee2894d6cfd6d1591e604067088d67 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f 67c9deaaabee2894d6cfd6d1591e604067088d67 # timeout=10 Commit message: "Autoupdated CLUBB_core" > git rev-list --no-walk 67c9deaaabee2894d6cfd6d1591e604067088d67 # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_cam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision 67c9deaaabee2894d6cfd6d1591e604067088d67 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f 67c9deaaabee2894d6cfd6d1591e604067088d67 # timeout=10 Commit message: "Autoupdated CLUBB_core" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Check out externals) [Pipeline] sh + python manage_externals/checkout_externals -e Externals.cfg Processing externals description file : Externals.cfg Processing externals description file : Externals_CDEPS.cfg Processing externals description file : Externals_CISM.cfg Processing externals description file : Externals_CLM.cfg Processing externals description file : Externals_CAM.cfg Checking status of externals: cice, cice6, cmeps, cdeps, fox, genf90, cpl7, share, mct, parallelio, cime, cism, source_cism, clm, fates, ptclm, fms, mosart, rtm, cam, chem_proc, carma, cosp2, pumas, atmos_phys, atmos_cubed_sphere, mpas, e- ./chem_proc M ./cime ./components/cdeps ./components/cdeps/fox ./components/cdeps/share/genf90 ./components/cice e-o ./components/cice6 ./components/cism ./components/cism/source_cism ./components/clm ./components/clm/src/fates ./components/clm/tools/site_and_regional/PTCLM ./components/cmeps ./components/cpl7 ./components/mosart ./components/rtm e-o ./libraries/FMS ./libraries/mct ./libraries/parallelio ./share ./src/atmos_phys ./src/dynamics/fv3/atmos_cubed_sphere ./src/dynamics/mpas/dycore ./src/physics/carma/base e- ./src/physics/cosp2/src ./src/physics/pumas ---------------------------------------------------------------------- The external repositories labeled with 'M' above are not in a clean state. The following are two options for how to proceed: (1) Go into each external that is not in a clean state and issue either an 'svn status' or a 'git status' command. Either revert or commit your changes so that all externals are in a clean state. (Note, though, that it is okay to have untracked files in your working directory.) Then rerun checkout_externals. (2) Alternatively, you do not have to rely on checkout_externals. Instead, you can manually update out-of-sync externals (labeled with 's' above) as described in the configuration file Externals.cfg. The external repositories labeled with '?' above are not under version control using the expected protocol. If you are sure you want to switch protocols, and you don't have any work you need to save from this directory, then run "rm -rf [directory]" before re-running the checkout_externals tool. ---------------------------------------------------------------------- [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Copy Config Files) [Pipeline] sh + cp -f cime_config_cesm_machines_files/config_compilers.xml cime/config/cesm/machines/config_compilers.xml + cp -f cime_config_cesm_machines_files/config_machines.xml cime/config/cesm/machines/config_machines.xml [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Make cprnc) [Pipeline] dir Running in /home/jenkins/workspace/branch_cam_test/cime/tools/cprnc [Pipeline] { [Pipeline] sh + bash -c 'export LIB_NETCDF=/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib; export INC_NETCDF=/usr/local/NETCDF-Fortran-4.4.5-gfortran/include; ../configure --macros-format=Makefile --mpilib=mpi-serial; source ./.env_mach_specific.sh; make' Could not find machine match for 'nelson.localdomain' or 'nelson' Traceback (most recent call last): File "/home/jenkins/workspace/branch_cam_test/cime/tools/cprnc/../configure", line 164, in <module> _main() File "/home/jenkins/workspace/branch_cam_test/cime/tools/cprnc/../configure", line 158, in _main opts = parse_command_line(sys.argv) File "/home/jenkins/workspace/branch_cam_test/cime/tools/cprnc/../configure", line 86, in parse_command_line machobj = Machines(machine=args.machine) File "/home/jenkins/workspace/branch_cam_test/cime/tools/../scripts/lib/CIME/XML/machines.py", line 74, in __init__ GenericXML.read(self, local_infile, schema) File "/home/jenkins/workspace/branch_cam_test/cime/tools/../scripts/lib/CIME/XML/generic_xml.py", line 101, in read with file_open(infile) as fd: File "/home/jenkins/workspace/branch_cam_test/cime/tools/../scripts/lib/CIME/XML/generic_xml.py", line 100, in <lambda> file_open = (lambda x: open(x, 'r', encoding='utf-8')) if six.PY3 else (lambda x: open(x, 'r')) FileNotFoundError: [Errno 2] No such file or directory: '/home/jenkins/workspace/branch_cam_test/cime/config/e3sm/machines/config_machines.xml' bash: line 1: ./.env_mach_specific.sh: No such file or directory Makefile:29: Macros.make: No such file or directory make: *** No rule to make target 'Macros.make'. Stop. [Pipeline] } [Pipeline] // dir [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run CAM) Stage "Run CAM" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] sh + gzip -d '/home/jenkins/cam_output/scratch/ERP_Ln9.f10_f10_mg37.F2000climo.nelson_gnu.cam-outfrq9s.*/bld/atm.bldlog.*.gz' gzip: /home/jenkins/cam_output/scratch/ERP_Ln9.f10_f10_mg37.F2000climo.nelson_gnu.cam-outfrq9s.*/bld/atm.bldlog.*.gz: No such file or directory [Pipeline] echo Not all logs were made. [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE