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Started by user Gunther Huebler Checking out git https://github.com/larson-group/cam.git into /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec to read jenkins_tests/cam_gpu_test/Jenkinsfile The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/no_batch_test^{commit} # timeout=10 Checking out Revision daa1d90424a9559bfd31bf5dba46fb0afa84cdcf (refs/remotes/origin/no_batch_test) > git config core.sparsecheckout # timeout=10 > git checkout -f daa1d90424a9559bfd31bf5dba46fb0afa84cdcf # timeout=10 Commit message: "Removing tmp removal for investigation." > git rev-list --no-walk daa1d90424a9559bfd31bf5dba46fb0afa84cdcf # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_cam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/no_batch_test^{commit} # timeout=10 Checking out Revision daa1d90424a9559bfd31bf5dba46fb0afa84cdcf (refs/remotes/origin/no_batch_test) > git config core.sparsecheckout # timeout=10 > git checkout -f daa1d90424a9559bfd31bf5dba46fb0afa84cdcf # timeout=10 Commit message: "Removing tmp removal for investigation." [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_repo.py . Checking out externals... Copying ccs_config files [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/ /home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc/ [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Running ne3 with OpenACC) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh ----- Case Setup ----- Compset longname is 2000_CAM70_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam7 physics: LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_pes.xml Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is 2000_CAM70_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM70_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-657-gdaa1d904 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc ERROR: Unknown Job Queue specified use --force to set Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc sharedlib_only is False model_only is False Generating component namelists as part of build 2024-09-30 13:24:16 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/run/atm_in 2024-09-30 13:24:16 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml 2024-09-30 13:24:17 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/branch_cam_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/branch_cam_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 1 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc output: 486 1 486 1 1 roundrobin square-ice 2024-09-30 13:24:17 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2024-09-30 13:24:17 rof Create namelist for component mosart Calling /home/jenkins/workspace/branch_cam_test/components/mosart//cime_config/buildnml 2024-09-30 13:24:17 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2024-09-30 13:24:17 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2024-09-30 13:24:17 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2024-09-30 13:24:17 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Building gptl with output to file /home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/gptl.bldlog.240930-132416 Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.gptl Traceback (most recent call last): File "/home/jenkins/workspace/branch_cam_test/cime/CIME/utils.py", line 707, in run_sub_or_cmd getattr(mod, subname)(*subargs) File "/home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.gptl", line 74, in buildlib run_bld_cmd_ensure_logging(cmd, logger) File "/home/jenkins/workspace/branch_cam_test/cime/CIME/utils.py", line 2616, in run_bld_cmd_ensure_logging expect(stat == 0, filter_unicode(errput)) File "/home/jenkins/workspace/branch_cam_test/cime/CIME/utils.py", line 176, in expect raise exc_type(msg) CIME.utils.CIMEError: ERROR: "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 786: warning: variable "c" was declared but never referenced [declared_but_not_referenced] int c; /* character index */ ^ Remark: individual warnings can be suppressed with "--diag_suppress <warning-name>" "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 1743: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 1745: warning: variable "len_prefix" was declared but never referenced [declared_but_not_referenced] int len_prefix; /* number of characters in prefix */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 1749: warning: variable "tpa" was set but never used [set_but_not_used] double tpa = 0.0; /* time stamp */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 1751: warning: variable "ptr_prefix" was declared but never referenced [declared_but_not_referenced] char *ptr_prefix; /* pointer to prefix string */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 1873: warning: variable "tpa" was set but never used [set_but_not_used] double tpa = 0.0; /* time stamp */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 2009: warning: variable "tpa" was set but never used [set_but_not_used] double tpa = 0.0; /* time stamp */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 2145: warning: variable "tpa" was set but never used [set_but_not_used] double tpa = 0.0; /* time stamp */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 2378: warning: variable "buf" was declared but never referenced [declared_but_not_referenced] struct tms buf; /* argument to times */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 3405: warning: variable "ret" was set but never used [set_but_not_used] int ret; ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 3442: warning: variable "name" was declared but never referenced [declared_but_not_referenced] char name[MAX_CHARS+1]; /* timer name requested by master */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 3810: warning: variable "s" was declared but never referenced [declared_but_not_referenced] int s = (MAX_CHARS + 1 ); /* spacing between timer names */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 3829: warning: variable "status" was declared but never referenced [declared_but_not_referenced] MPI_Status status; ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4069: warning: missing return statement at end of non-void function "ncmp" [implicit_return_from_non_void_function] } ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4287: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4356: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4420: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4493: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4834: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 5990: warning: variable "thisfunc" was declared but never referenced [declared_but_not_referenced] static const char *thisfunc = "get_thread_num"; ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 51: warning: variable "dousepapi" was set but never used [set_but_not_used] static bool dousepapi = false; /* saves a function call if stays false */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 61: warning: variable "ref_clock_gettime" was set but never used [set_but_not_used] static time_t ref_clock_gettime = -1;/* ref start point for clock_gettime */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 65: warning: variable "ref_papitime" was set but never used [set_but_not_used] static long long ref_papitime = -1; /* ref start point for PAPI_get_real_usec */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 89: warning: variable "threadid" was set but never used [set_but_not_used] static int threadid = -1; ^ Timing stats (front end) 0.13 seconds (CPU) 0.13 seconds (elapsed) parsing TU(s) 0.13 seconds (CPU) 0.12 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.00 seconds (CPU) 0.01 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.00 seconds (CPU) 0.01 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): parser 10 millisecs 5% hlscrub 40 millisecs 21% invarif 60 millisecs 31% optimize 10 millisecs 5% schedule 60 millisecs 31% uncategorized 10 millisecs 5% Total time 190 millisecs Timing stats (front end) 0.03 seconds (CPU) 0.04 seconds (elapsed) parsing TU(s) 0.03 seconds (CPU) 0.04 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): parser 10 millisecs 100% Total time 10 millisecs Timing stats (front end) 0.07 seconds (CPU) 0.08 seconds (elapsed) parsing TU(s) 0.07 seconds (CPU) 0.08 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): schedule 10 millisecs 100% Total time 10 millisecs "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 50: warning: variable "size2" was declared but never referenced [declared_but_not_referenced] int size, size2; /* process size (returned from OS) */ ^ Remark: individual warnings can be suppressed with "--diag_suppress <warning-name>" "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 51: warning: variable "rss2" was declared but never referenced [declared_but_not_referenced] int rss, rss2; /* resident set size (returned from OS) */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 52: warning: variable "share2" was declared but never referenced [declared_but_not_referenced] int share, share2; /* shared data segment size (returned from OS) */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 53: warning: variable "text2" was declared but never referenced [declared_but_not_referenced] int text, text2; /* text segment size (returned from OS) */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 54: warning: variable "datastack2" was declared but never referenced [declared_but_not_referenced] int datastack, datastack2; /* data/stack size (returned from OS) */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 55: warning: variable "kbytesperblock" was declared but never referenced [declared_but_not_referenced] static int kbytesperblock = -1; /* convert to Kbytes (init to invalid) */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 56: warning: variable "nbytes" was declared but never referenced [declared_but_not_referenced] static const int nbytes =1024*1024*1024;/* allocate 1 GB */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 57: warning: variable "space" was declared but never referenced [declared_but_not_referenced] void *space; /* allocated space */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 135: warning: function "nearest_powerof2" was declared but never referenced [declared_but_not_referenced] static int nearest_powerof2 (const int val) ^ Timing stats (front end) 0.09 seconds (CPU) 0.09 seconds (elapsed) parsing TU(s) 0.08 seconds (CPU) 0.09 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.01 seconds (CPU) 0.00 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.01 seconds (CPU) 0.00 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): schedule 10 millisecs 100% Total time 10 millisecs Timing stats (front end) 0.07 seconds (CPU) 0.08 seconds (elapsed) parsing TU(s) 0.07 seconds (CPU) 0.07 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): parser 10 millisecs 33% cuda 10 millisecs 33% uncategorized 10 millisecs 33% Total time 30 millisecs Timing stats (front end) 0.13 seconds (CPU) 0.13 seconds (elapsed) parsing TU(s) 0.12 seconds (CPU) 0.12 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.01 seconds (CPU) 0.01 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.01 seconds (CPU) 0.01 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): parser 10 millisecs 25% hlscrub 10 millisecs 25% schedule 20 millisecs 50% Total time 40 millisecs Timing stats: init 20 millisecs 40% upper 10 millisecs 20% carry 10 millisecs 20% schedule 10 millisecs 20% Total time 50 millisecs Timing stats: init 210 millisecs 45% upper 160 millisecs 34% expand 30 millisecs 6% carry 10 millisecs 2% schedule 30 millisecs 6% assemble 20 millisecs 4% Total time 460 millisecs llc: error: No such file or directory make: *** [/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/Makefile:91: perf_mod.o] Error 2 During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc/./case.build", line 267, in <module> _main_func(__doc__) File "/home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc/./case.build", line 251, in _main_func success = build.case_build( File "/home/jenkins/workspace/branch_cam_test/cime/CIME/build.py", line 1321, in case_build return run_and_log_case_status(functor, cb, caseroot=caseroot) File "/home/jenkins/workspace/branch_cam_test/cime/CIME/utils.py", line 2482, in run_and_log_case_status rv = func() File "/home/jenkins/workspace/branch_cam_test/cime/CIME/build.py", line 1305, in <lambda> functor = lambda: _case_build_impl( File "/home/jenkins/workspace/branch_cam_test/cime/CIME/build.py", line 1195, in _case_build_impl logs = _build_libraries( File "/home/jenkins/workspace/branch_cam_test/cime/CIME/build.py", line 834, in _build_libraries run_sub_or_cmd( File "/home/jenkins/workspace/branch_cam_test/cime/CIME/utils.py", line 716, in run_sub_or_cmd with open(logfile, "a") as log_fd: FileNotFoundError: [Errno 2] No such file or directory: '/home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/gptl.bldlog.240930-132416' Error in sys.excepthook: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 76, in apport_excepthook binary = os.path.realpath(os.path.join(os.getcwd(), sys.argv[0])) FileNotFoundError: [Errno 2] No such file or directory Original exception was: Traceback (most recent call last): File "/home/jenkins/workspace/branch_cam_test/cime/CIME/utils.py", line 707, in run_sub_or_cmd getattr(mod, subname)(*subargs) File "/home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.gptl", line 74, in buildlib run_bld_cmd_ensure_logging(cmd, logger) File "/home/jenkins/workspace/branch_cam_test/cime/CIME/utils.py", line 2616, in run_bld_cmd_ensure_logging expect(stat == 0, filter_unicode(errput)) File "/home/jenkins/workspace/branch_cam_test/cime/CIME/utils.py", line 176, in expect raise exc_type(msg) CIME.utils.CIMEError: ERROR: "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 786: warning: variable "c" was declared but never referenced [declared_but_not_referenced] int c; /* character index */ ^ Remark: individual warnings can be suppressed with "--diag_suppress <warning-name>" "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 1743: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 1745: warning: variable "len_prefix" was declared but never referenced [declared_but_not_referenced] int len_prefix; /* number of characters in prefix */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 1749: warning: variable "tpa" was set but never used [set_but_not_used] double tpa = 0.0; /* time stamp */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 1751: warning: variable "ptr_prefix" was declared but never referenced [declared_but_not_referenced] char *ptr_prefix; /* pointer to prefix string */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 1873: warning: variable "tpa" was set but never used [set_but_not_used] double tpa = 0.0; /* time stamp */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 2009: warning: variable "tpa" was set but never used [set_but_not_used] double tpa = 0.0; /* time stamp */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 2145: warning: variable "tpa" was set but never used [set_but_not_used] double tpa = 0.0; /* time stamp */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 2378: warning: variable "buf" was declared but never referenced [declared_but_not_referenced] struct tms buf; /* argument to times */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 3405: warning: variable "ret" was set but never used [set_but_not_used] int ret; ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 3442: warning: variable "name" was declared but never referenced [declared_but_not_referenced] char name[MAX_CHARS+1]; /* timer name requested by master */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 3810: warning: variable "s" was declared but never referenced [declared_but_not_referenced] int s = (MAX_CHARS + 1 ); /* spacing between timer names */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 3829: warning: variable "status" was declared but never referenced [declared_but_not_referenced] MPI_Status status; ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4069: warning: missing return statement at end of non-void function "ncmp" [implicit_return_from_non_void_function] } ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4287: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4356: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4420: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4493: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 4834: warning: variable "numchars" was set but never used [set_but_not_used] int numchars; /* number of characters to copy */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 5990: warning: variable "thisfunc" was declared but never referenced [declared_but_not_referenced] static const char *thisfunc = "get_thread_num"; ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 51: warning: variable "dousepapi" was set but never used [set_but_not_used] static bool dousepapi = false; /* saves a function call if stays false */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 61: warning: variable "ref_clock_gettime" was set but never used [set_but_not_used] static time_t ref_clock_gettime = -1;/* ref start point for clock_gettime */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 65: warning: variable "ref_papitime" was set but never used [set_but_not_used] static long long ref_papitime = -1; /* ref start point for PAPI_get_real_usec */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/gptl.c", line 89: warning: variable "threadid" was set but never used [set_but_not_used] static int threadid = -1; ^ Timing stats (front end) 0.13 seconds (CPU) 0.13 seconds (elapsed) parsing TU(s) 0.13 seconds (CPU) 0.12 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.00 seconds (CPU) 0.01 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.00 seconds (CPU) 0.01 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): parser 10 millisecs 5% hlscrub 40 millisecs 21% invarif 60 millisecs 31% optimize 10 millisecs 5% schedule 60 millisecs 31% uncategorized 10 millisecs 5% Total time 190 millisecs Timing stats (front end) 0.03 seconds (CPU) 0.04 seconds (elapsed) parsing TU(s) 0.03 seconds (CPU) 0.04 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): parser 10 millisecs 100% Total time 10 millisecs Timing stats (front end) 0.07 seconds (CPU) 0.08 seconds (elapsed) parsing TU(s) 0.07 seconds (CPU) 0.08 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): schedule 10 millisecs 100% Total time 10 millisecs "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 50: warning: variable "size2" was declared but never referenced [declared_but_not_referenced] int size, size2; /* process size (returned from OS) */ ^ Remark: individual warnings can be suppressed with "--diag_suppress <warning-name>" "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 51: warning: variable "rss2" was declared but never referenced [declared_but_not_referenced] int rss, rss2; /* resident set size (returned from OS) */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 52: warning: variable "share2" was declared but never referenced [declared_but_not_referenced] int share, share2; /* shared data segment size (returned from OS) */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 53: warning: variable "text2" was declared but never referenced [declared_but_not_referenced] int text, text2; /* text segment size (returned from OS) */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 54: warning: variable "datastack2" was declared but never referenced [declared_but_not_referenced] int datastack, datastack2; /* data/stack size (returned from OS) */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 55: warning: variable "kbytesperblock" was declared but never referenced [declared_but_not_referenced] static int kbytesperblock = -1; /* convert to Kbytes (init to invalid) */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 56: warning: variable "nbytes" was declared but never referenced [declared_but_not_referenced] static const int nbytes =1024*1024*1024;/* allocate 1 GB */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 57: warning: variable "space" was declared but never referenced [declared_but_not_referenced] void *space; /* allocated space */ ^ "/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/GPTLprint_memusage.c", line 135: warning: function "nearest_powerof2" was declared but never referenced [declared_but_not_referenced] static int nearest_powerof2 (const int val) ^ Timing stats (front end) 0.09 seconds (CPU) 0.09 seconds (elapsed) parsing TU(s) 0.08 seconds (CPU) 0.09 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.01 seconds (CPU) 0.00 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.01 seconds (CPU) 0.00 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): schedule 10 millisecs 100% Total time 10 millisecs Timing stats (front end) 0.07 seconds (CPU) 0.08 seconds (elapsed) parsing TU(s) 0.07 seconds (CPU) 0.07 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): parser 10 millisecs 33% cuda 10 millisecs 33% uncategorized 10 millisecs 33% Total time 30 millisecs Timing stats (front end) 0.13 seconds (CPU) 0.13 seconds (elapsed) parsing TU(s) 0.12 seconds (CPU) 0.12 seconds (elapsed) lowering code 0.00 seconds (CPU) 0.00 seconds (elapsed) in wrapup 0.01 seconds (CPU) 0.01 seconds (elapsed) template wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) filescope wrapup 0.01 seconds (CPU) 0.01 seconds (elapsed) in final wrapup 0.00 seconds (CPU) 0.00 seconds (elapsed) Timing stats (back end): parser 10 millisecs 25% hlscrub 10 millisecs 25% schedule 20 millisecs 50% Total time 40 millisecs Timing stats: init 20 millisecs 40% upper 10 millisecs 20% carry 10 millisecs 20% schedule 10 millisecs 20% Total time 50 millisecs Timing stats: init 210 millisecs 45% upper 160 millisecs 34% expand 30 millisecs 6% carry 10 millisecs 2% schedule 30 millisecs 6% assemble 20 millisecs 4% Total time 460 millisecs llc: error: No such file or directory make: *** [/home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/timing/Makefile:91: perf_mod.o] Error 2 During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc/./case.build", line 267, in <module> _main_func(__doc__) File "/home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc/./case.build", line 251, in _main_func success = build.case_build( File "/home/jenkins/workspace/branch_cam_test/cime/CIME/build.py", line 1321, in case_build return run_and_log_case_status(functor, cb, caseroot=caseroot) File "/home/jenkins/workspace/branch_cam_test/cime/CIME/utils.py", line 2482, in run_and_log_case_status rv = func() File "/home/jenkins/workspace/branch_cam_test/cime/CIME/build.py", line 1305, in <lambda> functor = lambda: _case_build_impl( File "/home/jenkins/workspace/branch_cam_test/cime/CIME/build.py", line 1195, in _case_build_impl logs = _build_libraries( File "/home/jenkins/workspace/branch_cam_test/cime/CIME/build.py", line 834, in _build_libraries run_sub_or_cmd( File "/home/jenkins/workspace/branch_cam_test/cime/CIME/utils.py", line 716, in run_sub_or_cmd with open(logfile, "a") as log_fd: FileNotFoundError: [Errno 2] No such file or directory: '/home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/gptl.bldlog.240930-132416' Error building CAM [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output/ [Pipeline] sh + gzip -d '/home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*.gz' gzip: /home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*.gz: No such file or directory [Pipeline] echo Not all logs were compressed, this indicates a failure. [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE