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Started by an SCM change Obtained Jenkinsfile from git https://github.com/larson-group/e3sm.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/e3sm_run_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/e3sm.git > git init /home/jenkins/workspace/e3sm_run_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials THe key used by the system for the tests > git fetch --tags --progress https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision aba57a966f789fceb02e637c3011b2d1a41ba24c (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f aba57a966f789fceb02e637c3011b2d1a41ba24c # timeout=10 Commit message: "Autoupdated SILHS" > git rev-list --no-walk de54c68d60736837a45ba934d8d2b55e8b71cd5d # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + git submodule init Submodule 'components/cam/src/physics/rrtmgp/external' (https://github.com/RobertPincus/rte-rrtmgp.git) registered for path 'components/cam/src/physics/rrtmgp/external' Submodule 'components/clm/src/external_models/fates' (https://github.com/NGEET/fates.git) registered for path 'components/clm/src/external_models/fates' Submodule 'alm-mpp' (https://github.com/MPP-LSM/MPP.git) registered for path 'components/clm/src/external_models/mpp' Submodule 'sbetr' (https://github.com/BeTR-biogeochemistry-modeling/sbetr.git) registered for path 'components/clm/src/external_models/sbetr' Submodule 'components/mpas-source' (https://github.com/MPAS-Dev/MPAS-Model.git) registered for path 'components/mpas-source' Submodule 'externals/scorpio_classic' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio_classic' + git submodule update Cloning into 'components/cam/src/physics/rrtmgp/external'... Submodule path 'components/cam/src/physics/rrtmgp/external': checked out '0b1cffdd51a35045c28aae314e2b29e2a663b5e6' Cloning into 'components/clm/src/external_models/fates'... Submodule path 'components/clm/src/external_models/fates': checked out '1ad93c311ed1a5d45df656b9031c8714a7071e64' Cloning into 'components/clm/src/external_models/mpp'... Submodule path 'components/clm/src/external_models/mpp': checked out '82ef0c1a37ffd469e9a6ce84dbf487c6ef8762b2' Cloning into 'components/clm/src/external_models/sbetr'... Submodule path 'components/clm/src/external_models/sbetr': checked out 'd71fb2df928099bacc4e9a3a9f4b8a1f2a6e37a1' Cloning into 'components/mpas-source'... Submodule path 'components/mpas-source': checked out 'bb1ea15299544e2b25144c06c621ff40fa482760' Cloning into 'externals/scorpio_classic'... Submodule path 'externals/scorpio_classic': checked out '1e538b56fa7cfa209c119e866a95669875eb200d' [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Modify Run Scripts) [Pipeline] sh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_BOMEX.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_RICO.csh [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run BOMEX) [Pipeline] sh + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_test; csh nightly_test/nightly_e3sm_scm_BOMEX.csh; exit 0' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: aba57a9 Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-01-22 04:52:29 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-22 04:52:29 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-22 04:52:30 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-22 04:52:30 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-22 04:52:30 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-22 04:52:30 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-22 04:52:30 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-22 04:52:30 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-22 04:52:30 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-22 04:52:30 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-01-22 04:52:32 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-22 04:52:32 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-22 04:52:32 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-22 04:52:33 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-22 04:52:33 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-22 04:52:33 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-22 04:52:33 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-22 04:52:33 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-22 04:52:33 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-22 04:52:33 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/gptl.bldlog.210122-045232 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/mct.bldlog.210122-045232 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/pio.bldlog.210122-045232 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/csm_share.bldlog.210122-045232 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/atm.bldlog.210122-045232 - Building lnd Library Building lnd with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd.bldlog.210122-045232 - Building ice Library Building ice with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/ice.bldlog.210122-045232 - Building ocn Library Building ocn with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/ocn.bldlog.210122-045232 - Building rof Library Building rof with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/rof.bldlog.210122-045232 - Building glc Library Building glc with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/glc.bldlog.210122-045232 - Building wav Library - Building iac Library Building wav with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/wav.bldlog.210122-045232 Building iac with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/iac.bldlog.210122-045232 - Building esp Library Building esp with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/esp.bldlog.210122-045232 swav built in 0.506054 seconds sesp built in 0.511897 seconds siac built in 0.536142 seconds srof built in 0.563590 seconds sglc built in 0.578564 seconds docn built in 1.173087 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 19.973623 seconds Error: Syntax error in argument list at (1) Error: Syntax error in argument list at (1) Component atm build complete with 2 warnings Error: Syntax error in argument list at (1) Error: Syntax error in argument list at (1) Component atm build complete with 2 warnings cam built in 29.082340 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 73.646221 seconds ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/atm.bldlog.210122-045232 The case.build step failed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run DYCOMSrf01) [Pipeline] sh + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_test; csh nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh; exit 0' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: aba57a9 Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-01-22 04:54:32 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-22 04:54:33 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-22 04:54:33 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-22 04:54:33 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-22 04:54:33 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-22 04:54:33 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-22 04:54:33 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-22 04:54:33 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-22 04:54:33 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-22 04:54:33 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-01-22 04:54:35 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-22 04:54:35 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-22 04:54:36 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-22 04:54:36 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-22 04:54:36 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-22 04:54:36 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-22 04:54:36 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-22 04:54:36 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-22 04:54:36 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-22 04:54:36 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gptl.bldlog.210122-045435 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/mct.bldlog.210122-045435 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/pio.bldlog.210122-045435 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/csm_share.bldlog.210122-045435 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/atm.bldlog.210122-045435 - Building lnd Library Building lnd with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd.bldlog.210122-045435 - Building ice Library Building ice with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/ice.bldlog.210122-045435 - Building ocn Library Building ocn with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/ocn.bldlog.210122-045435 - Building rof Library Building rof with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/rof.bldlog.210122-045435 - Building glc Library Building glc with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/glc.bldlog.210122-045435 - Building wav Library Building wav with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/wav.bldlog.210122-045435 - Building iac Library Building iac with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/iac.bldlog.210122-045435 - Building esp Library Building esp with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/esp.bldlog.210122-045435 swav built in 0.539386 seconds sesp built in 0.528811 seconds sglc built in 0.587492 seconds siac built in 0.584749 seconds srof built in 1.132953 seconds docn built in 1.136571 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 20.300789 seconds Error: Syntax error in argument list at (1) Error: Syntax error in argument list at (1) Component atm build complete with 2 warnings Error: Syntax error in argument list at (1) Error: Syntax error in argument list at (1) Component atm build complete with 2 warnings cam built in 29.052393 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 73.794273 seconds ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/atm.bldlog.210122-045435 The case.build step failed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run RICO) [Pipeline] sh + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_test; csh nightly_test/nightly_e3sm_scm_RICO.csh; exit 0' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: aba57a9 Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-01-22 04:56:35 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-22 04:56:36 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-22 04:56:36 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-22 04:56:36 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-22 04:56:36 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-22 04:56:36 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-22 04:56:36 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-22 04:56:36 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-22 04:56:36 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-22 04:56:36 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-01-22 04:56:38 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-22 04:56:38 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-22 04:56:39 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-22 04:56:39 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-22 04:56:39 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-22 04:56:39 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-22 04:56:39 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-22 04:56:39 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-22 04:56:39 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-22 04:56:39 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/gptl.bldlog.210122-045638 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/mct.bldlog.210122-045638 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/pio.bldlog.210122-045638 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/csm_share.bldlog.210122-045638 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/atm.bldlog.210122-045638 - Building lnd Library Building lnd with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/lnd.bldlog.210122-045638 - Building ice Library Building ice with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/ice.bldlog.210122-045638 - Building ocn Library Building ocn with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/ocn.bldlog.210122-045638 - Building rof Library Building rof with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/rof.bldlog.210122-045638 - Building glc Library Building glc with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/glc.bldlog.210122-045638 - Building wav Library Building wav with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/wav.bldlog.210122-045638 - Building iac Library Building iac with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/iac.bldlog.210122-045638 - Building esp Library Building esp with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/esp.bldlog.210122-045638 srof built in 0.490308 seconds siac built in 0.490400 seconds swav built in 0.498120 seconds sesp built in 0.495915 seconds sglc built in 0.611752 seconds docn built in 1.127106 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 20.325976 seconds Error: Syntax error in argument list at (1) Error: Syntax error in argument list at (1) Component atm build complete with 2 warnings Error: Syntax error in argument list at (1) Error: Syntax error in argument list at (1) Component atm build complete with 2 warnings cam built in 28.755144 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 73.537847 seconds ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/atm.bldlog.210122-045638 The case.build step failed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Clean up) [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS