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Started by an SCM change Obtained Jenkinsfile from git https://github.com/larson-group/e3sm.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/e3sm_run_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/e3sm.git > git init /home/jenkins/workspace/e3sm_run_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials THe key used by the system for the tests > git fetch --tags --progress https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision c0a285b5d3cfeac4967d774aba3929ad2cff3a12 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f c0a285b5d3cfeac4967d774aba3929ad2cff3a12 # timeout=10 Commit message: "Autoupdated CLUBB_core" > git rev-list --no-walk d89ca046ae5edcf3c482a2b1ff4283990e6b9950 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + git submodule init Submodule 'components/cam/src/physics/rrtmgp/external' (https://github.com/RobertPincus/rte-rrtmgp.git) registered for path 'components/cam/src/physics/rrtmgp/external' Submodule 'components/clm/src/external_models/fates' (https://github.com/NGEET/fates.git) registered for path 'components/clm/src/external_models/fates' Submodule 'alm-mpp' (https://github.com/MPP-LSM/MPP.git) registered for path 'components/clm/src/external_models/mpp' Submodule 'sbetr' (https://github.com/BeTR-biogeochemistry-modeling/sbetr.git) registered for path 'components/clm/src/external_models/sbetr' Submodule 'components/mpas-source' (https://github.com/MPAS-Dev/MPAS-Model.git) registered for path 'components/mpas-source' Submodule 'externals/scorpio_classic' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio_classic' + git submodule update Cloning into 'components/cam/src/physics/rrtmgp/external'... Submodule path 'components/cam/src/physics/rrtmgp/external': checked out '0b1cffdd51a35045c28aae314e2b29e2a663b5e6' Cloning into 'components/clm/src/external_models/fates'... Submodule path 'components/clm/src/external_models/fates': checked out '1ad93c311ed1a5d45df656b9031c8714a7071e64' Cloning into 'components/clm/src/external_models/mpp'... Submodule path 'components/clm/src/external_models/mpp': checked out '82ef0c1a37ffd469e9a6ce84dbf487c6ef8762b2' Cloning into 'components/clm/src/external_models/sbetr'... Submodule path 'components/clm/src/external_models/sbetr': checked out 'd71fb2df928099bacc4e9a3a9f4b8a1f2a6e37a1' Cloning into 'components/mpas-source'... Submodule path 'components/mpas-source': checked out 'bb1ea15299544e2b25144c06c621ff40fa482760' Cloning into 'externals/scorpio_classic'... Submodule path 'externals/scorpio_classic': checked out '1e538b56fa7cfa209c119e866a95669875eb200d' [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Modify Run Scripts) [Pipeline] sh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_BOMEX.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_RICO.csh [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run BOMEX) [Pipeline] sh + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_test; csh nightly_test/nightly_e3sm_scm_BOMEX.csh; exit 0' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: c0a285b Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-01-16 05:29:15 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:29:15 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:29:15 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:29:16 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:29:16 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:29:16 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:29:16 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:29:16 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:29:16 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:29:16 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-01-16 05:29:18 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:29:18 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:29:18 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:29:18 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:29:18 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:29:18 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:29:18 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:29:18 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:29:18 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:29:18 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/gptl.bldlog.210116-052918 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/mct.bldlog.210116-052918 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/pio.bldlog.210116-052918 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/csm_share.bldlog.210116-052918 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/atm.bldlog.210116-052918 - Building lnd Library - Building ice Library Building lnd with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd.bldlog.210116-052918 Building ice with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/ice.bldlog.210116-052918 - Building ocn Library Building ocn with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/ocn.bldlog.210116-052918 - Building rof Library Building rof with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/rof.bldlog.210116-052918 - Building glc Library Building glc with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/glc.bldlog.210116-052918 - Building wav Library Building wav with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/wav.bldlog.210116-052918 - Building iac Library Building iac with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/iac.bldlog.210116-052918 - Building esp Library Building esp with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/esp.bldlog.210116-052918 srof built in 0.581327 seconds sesp built in 0.594111 seconds swav built in 0.659304 seconds siac built in 0.711574 seconds sglc built in 0.725637 seconds docn built in 1.391463 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 22.035137 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 109.889259 seconds Component atm build complete with 5 warnings Component atm build complete with 5 warnings cam built in 119.142925 seconds Building e3sm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.210116-052918 Component e3sm exe build complete with 3 warnings Time spent not building: 0.971324 sec Time spent building: 164.275470 sec MODEL BUILD HAS FINISHED SUCCESSFULLY Creating component namelists 2021-01-16 05:32:03 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:32:04 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:32:04 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:32:04 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:32:04 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:32:04 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:32:04 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:32:04 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:32:04 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:32:04 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/clm.input_data_list' Model clm no file specified for finidat Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2021-01-16 05:32:04 CASE.RUN BEGINS HERE 2021-01-16 05:32:04 RUN_MODEL BEGINS HERE 2021-01-16 05:32:04 PRE_RUN_CHECK BEGINS HERE 2021-01-16 05:32:04 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts Creating component namelists 2021-01-16 05:32:04 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:32:04 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:32:05 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:32:05 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:32:05 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:32:05 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:32:05 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:32:05 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:32:05 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:32:05 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists 2021-01-16 05:32:05 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2021-01-16 05:32:05 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe >> e3sm.log.$LID 2>&1 2021-01-16 05:32:05 SAVE_PRERUN_PROVENANCE BEGINS HERE 2021-01-16 05:32:05 SAVE_PRERUN_PROVENANCE HAS FINISHED 2021-01-16 05:32:05 MODEL EXECUTION BEGINS HERE 2021-01-16 05:32:05 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/run/e3sm.log.210116-053204 Submitted job case.run with id None BOMEX was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run DYCOMSrf01) [Pipeline] sh + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_test; csh nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh; exit 0' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: c0a285b Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-01-16 05:32:11 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:32:11 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:32:11 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:32:12 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:32:12 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:32:12 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:32:12 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:32:12 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:32:12 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:32:12 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-01-16 05:32:14 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:32:14 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:32:14 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:32:14 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:32:14 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:32:14 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:32:14 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:32:14 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:32:14 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:32:14 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gptl.bldlog.210116-053214 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/mct.bldlog.210116-053214 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/pio.bldlog.210116-053214 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/csm_share.bldlog.210116-053214 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/atm.bldlog.210116-053214 - Building lnd Library Building lnd with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd.bldlog.210116-053214 - Building ice Library Building ice with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/ice.bldlog.210116-053214 - Building ocn Library Building ocn with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/ocn.bldlog.210116-053214 - Building rof Library Building rof with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/rof.bldlog.210116-053214 - Building glc Library Building glc with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/glc.bldlog.210116-053214 - Building wav Library - Building iac Library Building wav with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/wav.bldlog.210116-053214 Building iac with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/iac.bldlog.210116-053214 - Building esp Library Building esp with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/esp.bldlog.210116-053214 swav built in 0.613236 seconds sglc built in 0.672210 seconds sesp built in 0.654852 seconds siac built in 0.675489 seconds docn built in 1.482449 seconds srof built in 20.909744 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 20.920886 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 106.177912 seconds Component atm build complete with 5 warnings Component atm build complete with 5 warnings cam built in 115.365294 seconds Building e3sm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.210116-053214 Component e3sm exe build complete with 3 warnings Time spent not building: 0.954615 sec Time spent building: 158.085362 sec MODEL BUILD HAS FINISHED SUCCESSFULLY Creating component namelists 2021-01-16 05:34:53 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:34:53 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:34:54 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:34:54 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:34:54 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:34:54 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:34:54 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:34:54 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:34:54 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:34:54 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/clm.input_data_list' Model clm no file specified for finidat Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2021-01-16 05:34:54 CASE.RUN BEGINS HERE 2021-01-16 05:34:54 RUN_MODEL BEGINS HERE 2021-01-16 05:34:54 PRE_RUN_CHECK BEGINS HERE 2021-01-16 05:34:54 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts Creating component namelists 2021-01-16 05:34:54 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:34:54 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:34:54 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:34:55 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:34:55 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:34:55 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:34:55 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:34:55 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:34:55 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:34:55 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists 2021-01-16 05:34:55 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2021-01-16 05:34:55 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe >> e3sm.log.$LID 2>&1 2021-01-16 05:34:55 SAVE_PRERUN_PROVENANCE BEGINS HERE 2021-01-16 05:34:55 SAVE_PRERUN_PROVENANCE HAS FINISHED 2021-01-16 05:34:55 MODEL EXECUTION BEGINS HERE 2021-01-16 05:34:55 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/run/e3sm.log.210116-053454 Submitted job case.run with id None DYCOMSrf01 was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run RICO) [Pipeline] sh + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_test; csh nightly_test/nightly_e3sm_scm_RICO.csh; exit 0' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: c0a285b Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-01-16 05:35:02 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:35:02 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:35:02 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:35:02 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:35:02 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:35:02 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:35:02 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:35:02 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:35:02 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:35:02 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-01-16 05:35:04 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:35:05 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:35:05 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:35:05 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:35:05 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:35:05 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:35:05 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:35:05 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:35:05 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:35:05 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/gptl.bldlog.210116-053504 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/mct.bldlog.210116-053504 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/pio.bldlog.210116-053504 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/csm_share.bldlog.210116-053504 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/atm.bldlog.210116-053504 - Building lnd Library Building lnd with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/lnd.bldlog.210116-053504 - Building ice Library Building ice with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/ice.bldlog.210116-053504 - Building ocn Library Building ocn with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/ocn.bldlog.210116-053504 - Building rof Library - Building glc Library Building rof with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/rof.bldlog.210116-053504 Building glc with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/glc.bldlog.210116-053504 - Building wav Library - Building iac Library Building wav with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/wav.bldlog.210116-053504 - Building esp Library Building iac with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/iac.bldlog.210116-053504 Building esp with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/esp.bldlog.210116-053504 siac built in 0.557318 seconds sesp built in 0.544265 seconds swav built in 0.587159 seconds sglc built in 0.674310 seconds srof built in 0.677096 seconds docn built in 1.428998 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 20.721683 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 105.829458 seconds Component atm build complete with 5 warnings Component atm build complete with 5 warnings cam built in 115.555675 seconds Building e3sm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.210116-053504 Component e3sm exe build complete with 3 warnings Time spent not building: 0.967511 sec Time spent building: 158.171143 sec MODEL BUILD HAS FINISHED SUCCESSFULLY Creating component namelists 2021-01-16 05:37:44 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:37:44 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:37:44 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:37:45 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:37:45 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:37:45 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:37:45 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:37:45 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:37:45 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:37:45 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/clm.input_data_list' Model clm no file specified for finidat Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2021-01-16 05:37:45 CASE.RUN BEGINS HERE 2021-01-16 05:37:45 RUN_MODEL BEGINS HERE 2021-01-16 05:37:45 PRE_RUN_CHECK BEGINS HERE 2021-01-16 05:37:45 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts Creating component namelists 2021-01-16 05:37:45 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-01-16 05:37:45 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-01-16 05:37:45 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-01-16 05:37:45 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-01-16 05:37:45 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-01-16 05:37:45 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-01-16 05:37:45 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-01-16 05:37:45 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-01-16 05:37:46 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-01-16 05:37:46 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists 2021-01-16 05:37:46 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2021-01-16 05:37:46 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe >> e3sm.log.$LID 2>&1 2021-01-16 05:37:46 SAVE_PRERUN_PROVENANCE BEGINS HERE 2021-01-16 05:37:46 SAVE_PRERUN_PROVENANCE HAS FINISHED 2021-01-16 05:37:46 MODEL EXECUTION BEGINS HERE 2021-01-16 05:37:46 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/run/e3sm.log.210116-053745 Submitted job case.run with id None RICO was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Clean up) [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS