+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load intel netcdf-fortran mpich intel-oneapi-mkl
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ cd WRF/test/em_quarter_ss
+ ./run_WRF_CLUBB.bash -all
[09 Jan 2026 04:40:09 AM] *** Script started (run_WRF_CLUBB.bash)
Namelist logging not found in namelist.input. Using registry defaults for varia
bles in logging.
Running ARM
Namelist logging not found in namelist.input. Using registry defaults for varia
bles in logging.
forrtl: severe (19): invalid reference to variable in NAMELIST input, unit 10, file /home/jenkins/workspace/wrf_clubb_plot_ifort/WRF/test/em_quarter_ss/../clubb_input/tunable_parameters/configurable_model_flags.in, line 26, position 30
Image PC Routine Line Source
wrf.exe 00000000043FB37D Unknown Unknown Unknown
wrf.exe 0000000000EED2EE module_bl_clubb_m 1705 module_bl_clubb.f90
wrf.exe 0000000002797E4C module_physics_in 2089 module_physics_init.f90
wrf.exe 00000000027A594E module_physics_in 798 module_physics_init.f90
wrf.exe 0000000001873FED start_domain_em_ 786 start_em.f90
wrf.exe 0000000001170F10 start_domain_ 161 start_domain.f90
wrf.exe 0000000000EB4195 med_initialdata_i 264 mediation_wrfmain.f90
wrf.exe 0000000000417E65 module_wrf_top_mp 163 module_wrf_top.f90
wrf.exe 0000000000417014 MAIN__ 74 wrf.f90
wrf.exe 0000000000416F8D Unknown Unknown Unknown
libc.so.6 00007B263E029D90 Unknown Unknown Unknown
libc.so.6 00007B263E029E40 __libc_start_main Unknown Unknown
wrf.exe 0000000000416EA5 Unknown Unknown Unknown
mv: cannot stat 'clubb_sfc.nc': No such file or directory
mv: cannot stat 'clubb_zm.nc': No such file or directory
mv: cannot stat 'clubb_zt.nc': No such file or directory
Namelist logging not found in namelist.input. Using registry defaults for varia
bles in logging.
Running ATEX
Namelist logging not found in namelist.input. Using registry defaults for varia
bles in logging.
forrtl: severe (19): invalid reference to variable in NAMELIST input, unit 10, file /home/jenkins/workspace/wrf_clubb_plot_ifort/WRF/test/em_quarter_ss/../clubb_input/tunable_parameters/configurable_model_flags.in, line 26, position 30
Image PC Routine Line Source
wrf.exe 00000000043FB37D Unknown Unknown Unknown
wrf.exe 0000000000EED2EE module_bl_clubb_m 1705 module_bl_clubb.f90
wrf.exe 0000000002797E4C module_physics_in 2089 module_physics_init.f90
wrf.exe 00000000027A594E module_physics_in 798 module_physics_init.f90
wrf.exe 0000000001873FED start_domain_em_ 786 start_em.f90
wrf.exe 0000000001170F10 start_domain_ 161 start_domain.f90
wrf.exe 0000000000EB4195 med_initialdata_i 264 mediation_wrfmain.f90
wrf.exe 0000000000417E65 module_wrf_top_mp 163 module_wrf_top.f90
wrf.exe 0000000000417014 MAIN__ 74 wrf.f90
wrf.exe 0000000000416F8D Unknown Unknown Unknown
libc.so.6 0000772059429D90 Unknown Unknown Unknown
libc.so.6 0000772059429E40 __libc_start_main Unknown Unknown
wrf.exe 0000000000416EA5 Unknown Unknown Unknown
mv: cannot stat 'clubb_sfc.nc': No such file or directory
mv: cannot stat 'clubb_zm.nc': No such file or directory
mv: cannot stat 'clubb_zt.nc': No such file or directory
Namelist logging not found in namelist.input. Using registry defaults for varia
bles in logging.
Running BOMEX
Namelist logging not found in namelist.input. Using registry defaults for varia
bles in logging.
forrtl: severe (19): invalid reference to variable in NAMELIST input, unit 10, file /home/jenkins/workspace/wrf_clubb_plot_ifort/WRF/test/em_quarter_ss/../clubb_input/tunable_parameters/configurable_model_flags.in, line 26, position 30
Image PC Routine Line Source
wrf.exe 00000000043FB37D Unknown Unknown Unknown
wrf.exe 0000000000EED2EE module_bl_clubb_m 1705 module_bl_clubb.f90
wrf.exe 0000000002797E4C module_physics_in 2089 module_physics_init.f90
wrf.exe 00000000027A594E module_physics_in 798 module_physics_init.f90
wrf.exe 0000000001873FED start_domain_em_ 786 start_em.f90
wrf.exe 0000000001170F10 start_domain_ 161 start_domain.f90
wrf.exe 0000000000EB4195 med_initialdata_i 264 mediation_wrfmain.f90
wrf.exe 0000000000417E65 module_wrf_top_mp 163 module_wrf_top.f90
wrf.exe 0000000000417014 MAIN__ 74 wrf.f90
wrf.exe 0000000000416F8D Unknown Unknown Unknown
libc.so.6 00007AF47E029D90 Unknown Unknown Unknown
libc.so.6 00007AF47E029E40 __libc_start_main Unknown Unknown
wrf.exe 0000000000416EA5 Unknown Unknown Unknown
mv: cannot stat 'clubb_sfc.nc': No such file or directory
mv: cannot stat 'clubb_zm.nc': No such file or directory
mv: cannot stat 'clubb_zt.nc': No such file or directory
Namelist logging not found in namelist.input. Using registry defaults for varia
bles in logging.
Running FIRE
Namelist logging not found in namelist.input. Using registry defaults for varia
bles in logging.
forrtl: severe (19): invalid reference to variable in NAMELIST input, unit 10, file /home/jenkins/workspace/wrf_clubb_plot_ifort/WRF/test/em_quarter_ss/../clubb_input/tunable_parameters/configurable_model_flags.in, line 26, position 30
Image PC Routine Line Source
wrf.exe 00000000043FB37D Unknown Unknown Unknown
wrf.exe 0000000000EED2EE module_bl_clubb_m 1705 module_bl_clubb.f90
wrf.exe 0000000002797E4C module_physics_in 2089 module_physics_init.f90
wrf.exe 00000000027A594E module_physics_in 798 module_physics_init.f90
wrf.exe 0000000001873FED start_domain_em_ 786 start_em.f90
wrf.exe 0000000001170F10 start_domain_ 161 start_domain.f90
wrf.exe 0000000000EB4195 med_initialdata_i 264 mediation_wrfmain.f90
wrf.exe 0000000000417E65 module_wrf_top_mp 163 module_wrf_top.f90
wrf.exe 0000000000417014 MAIN__ 74 wrf.f90
wrf.exe 0000000000416F8D Unknown Unknown Unknown
libc.so.6 00007A7B23629D90 Unknown Unknown Unknown
libc.so.6 00007A7B23629E40 __libc_start_main Unknown Unknown
wrf.exe 0000000000416EA5 Unknown Unknown Unknown
mv: cannot stat 'clubb_sfc.nc': No such file or directory
mv: cannot stat 'clubb_zm.nc': No such file or directory
mv: cannot stat 'clubb_zt.nc': No such file or directory
Namelist logging not found in namelist.input. Using registry defaults for varia
bles in logging.
Running Wangara
Namelist logging not found in namelist.input. Using registry defaults for varia
bles in logging.
forrtl: severe (19): invalid reference to variable in NAMELIST input, unit 10, file /home/jenkins/workspace/wrf_clubb_plot_ifort/WRF/test/em_quarter_ss/../clubb_input/tunable_parameters/configurable_model_flags.in, line 26, position 30
Image PC Routine Line Source
wrf.exe 00000000043FB37D Unknown Unknown Unknown
wrf.exe 0000000000EED2EE module_bl_clubb_m 1705 module_bl_clubb.f90
wrf.exe 0000000002797E4C module_physics_in 2089 module_physics_init.f90
wrf.exe 00000000027A594E module_physics_in 798 module_physics_init.f90
wrf.exe 0000000001873FED start_domain_em_ 786 start_em.f90
wrf.exe 0000000001170F10 start_domain_ 161 start_domain.f90
wrf.exe 0000000000EB4195 med_initialdata_i 264 mediation_wrfmain.f90
wrf.exe 0000000000417E65 module_wrf_top_mp 163 module_wrf_top.f90
wrf.exe 0000000000417014 MAIN__ 74 wrf.f90
wrf.exe 0000000000416F8D Unknown Unknown Unknown
libc.so.6 0000725DA4629D90 Unknown Unknown Unknown
libc.so.6 0000725DA4629E40 __libc_start_main Unknown Unknown
wrf.exe 0000000000416EA5 Unknown Unknown Unknown
mv: cannot stat 'clubb_sfc.nc': No such file or directory
mv: cannot stat 'clubb_zm.nc': No such file or directory
mv: cannot stat 'clubb_zt.nc': No such file or directory
svn: E155007: '/home/jenkins/workspace/wrf_clubb_plot_ifort/WRF/test/em_quarter_ss/namelist.input' is not a working copy
[09 Jan 2026 04:40:13 AM] *** Script ended successfully (run_WRF_CLUBB.bash)
