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Started by an SCM change Obtained jenkins_tests/sam_micro_drizzle_intel_test/Jenkinsfile from git https://github.com/larson-group/sam_clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/sam_micro_drizzle_intel_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/sam_clubb.git > git init /home/jenkins/workspace/sam_micro_drizzle_intel_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 9d5b2ff36fe5c591a59cb2c0e3bc6fa7118cdf69 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 9d5b2ff36fe5c591a59cb2c0e3bc6fa7118cdf69 # timeout=10 Commit message: "Autoupdated CLUBB files from Clubb's src/CLUBB_core" > git rev-list --no-walk e240156ca4469279a7ea8ca5f3cbdcd389857ec0 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Setup LES_KK_micro) [Pipeline] sh + SCRIPTS/LES_setup/setup_LES_KK_micro.bash Setting up SAM for a LES using KK microphysics (MICRO_DRIZZLE) Reading the name of the case to be setup from /home/jenkins/workspace/sam_micro_drizzle_intel_test/CaseName Setting up the configuration for a LES using MICRO_DRIZZLE for DYCOMS_RF02 Copying the special domain file DYCOMS_RF02/domain.f90.les to SRC/domain.F90 ***** REMINDER: change nsubdomains_x and/or nsubdomains_y in SRC/domain.f90 when running in parallel ***** Using the current surface.F90 and nudging.F90 files Copying DYCOMS_RF02/prm to DYCOMS_RF02/prm.prev Copying DYCOMS_RF02/prm.les to DYCOMS_RF02/prm ***** REMINDER: change docloudsed and caseid in DYCOMS_RF02/prm to toggle the cloud water sedimentation setting ***** Copying DYCOMS_RF02/grd to DYCOMS_RF02/grd_prev Copying DYCOMS_RF02/grd_rev to DYCOMS_RF02/grd Copying Build to Build.prev Editing the Build file Case DYCOMS_RF02: Change MICRO_DIR and SGS_DIR in Build, remove CLUBB_DIR, SILHS_DIR, CLUBB_MICROPHYS_UTILS Copying Makefile to Makefile.prev Editing the Makefile ***** REMINDER: remember to comment/uncomment the Makefile for the type of compiler that you are using ***** Copying runsam.bash to runsam.bash.prev Editing runsam.bash ***** REMINDER: remember to comment/uncomment runsam.bash based on the compiler that was used. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Make File) [Pipeline] sh + vim Makefile '+%s/# {nightly intel} DO NOT REMOVE THIS LINE\n#ifeq ($(PLATFORM),Linux)\nifeq ($(PLATFORM),NOTNOT) # Change to line above to use/# {nightly intel} DO NOT REMOVE THIS LINE\rifeq ($(PLATFORM),Linux)\r#ifeq ($(PLATFORM),NOTNOT) # Change to line above to use/g' +wqall Vim: Warning: Output is not to a terminal Vim: Warning: Input is not from a terminal [m[m[0m[H[2J[24;1H"Makefile" 707L, 22673C "Makefile" 707L, 22673C written + vim Makefile '+%s/# {nightly pgi} DO NOT REMOVE THIS LINE\nifeq ($(PLATFORM),Linux)\n#ifeq ($(PLATFORM),NOTNOT) # Change to line above to use/# {nightly pgi} DO NOT REMOVE THIS LINE\r#ifeq ($(PLATFORM),Linux)\rifeq ($(PLATFORM),NOTNOT) # Change to line above to use/g' +wqall Vim: Warning: Output is not to a terminal Vim: Warning: Input is not from a terminal [m[m[0m[H[2J[24;1H"Makefile" 707L, 22673C "Makefile" 707L, 22673C written [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Default Case) [Pipeline] sh + sed -i 's/nstop.*/nstop = 120,/g' DYCOMS_RF02/prm + sed -i 's/nstat .*/nstat = 120,/g' DYCOMS_RF02/prm + sed -i 's/nstatfrq.*/nstatfrq = 1,/g' DYCOMS_RF02/prm [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + ./Build if ! ( -d /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_2D ) mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_2D mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_2D if ! ( -d /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_3D ) mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_3D mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_3D if ! ( -d /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_MOMENTS ) mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_MOMENTS mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_MOMENTS if ! ( -d /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_STAT ) mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_STAT mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_STAT if ! ( -d /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_MOVIES ) mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_MOVIES mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_MOVIES if ! ( -d /home/jenkins/workspace/sam_micro_drizzle_intel_test/RESTART ) mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/RESTART mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/RESTART if ! ( -d /home/jenkins/workspace/sam_micro_drizzle_intel_test/OBJ ) mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OBJ mkdir /home/jenkins/workspace/sam_micro_drizzle_intel_test/OBJ if ! ( -d OUT_2D ) ln -s /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_2D OUT_2D if ! ( -d OUT_3D ) ln -s /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_3D OUT_3D if ! ( -d OUT_MOMENTS ) ln -s /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_MOMENTS OUT_MOMENTS if ! ( -d OUT_STAT ) ln -s /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_STAT OUT_STAT if ! ( -d OUT_MOVIES ) ln -s /home/jenkins/workspace/sam_micro_drizzle_intel_test/OUT_MOVIES OUT_MOVIES if ! ( -d RESTART ) ln -s /home/jenkins/workspace/sam_micro_drizzle_intel_test/RESTART RESTART if ! ( -d OBJ ) ln -s /home/jenkins/workspace/sam_micro_drizzle_intel_test/OBJ OBJ cat if ( -e /home/jenkins/workspace/sam_micro_drizzle_intel_test/OBJ/MICRO_RAD_OPTIONS ) then mv -f MICRO_RAD_OPTIONS.new /home/jenkins/workspace/sam_micro_drizzle_intel_test/OBJ/MICRO_RAD_OPTIONS cd /home/jenkins/workspace/sam_micro_drizzle_intel_test/OBJ if ( ! ( -e Filepath ) ) then cat endif gmake -j4 -f /home/jenkins/workspace/sam_micro_drizzle_intel_test/Makefile cat: Srcfiles: No such file or directory /home/jenkins/workspace/sam_micro_drizzle_intel_test/SRC/SCRIPT/mkSrcfiles > Srcfiles /home/jenkins/workspace/sam_micro_drizzle_intel_test/SRC/SCRIPT/mkDepends Filepath Srcfiles > Depends /usr/local/mpi/MPICH-3.3.1-intel/bin/mpif90 -xHost -c -debug full -CB -g -traceback -check all -ftrapuv -fpe0 -ftz -I/usr/local/mpi/MPICH-3.3.1-intel/include -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include -DNETCDF -DUWM_STATS -DUWM_MICRO_CHANGES -DPNNL_STATS -DUWM_MISC /home/jenkins/workspace/sam_micro_drizzle_intel_test/SRC/SIMULATORS/MISR_simulator.f /usr/local/mpi/MPICH-3.3.1-intel/bin/mpif90 -xHost -c -debug full -CB -g -traceback -check all -ftrapuv -fpe0 -ftz -I/usr/local/mpi/MPICH-3.3.1-intel/include -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include -DNETCDF -DUWM_STATS -DUWM_MICRO_CHANGES -DPNNL_STATS -DUWM_MISC /home/jenkins/workspace/sam_micro_drizzle_intel_test/SRC/ADV_MPDATA/advection.f90; /usr/local/mpi/MPICH-3.3.1-intel/bin/mpif90 -xHost -c -debug full -CB -g -traceback -check all -ftrapuv -fpe0 -ftz -I/usr/local/mpi/MPICH-3.3.1-intel/include -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include -DNETCDF -DUWM_STATS -DUWM_MICRO_CHANGES -DPNNL_STATS -DUWM_MISC /home/jenkins/workspace/sam_micro_drizzle_intel_test/SRC/domain.F90; /usr/local/mpi/MPICH-3.3.1-intel/bin/mpif90 -xHost -c -debug full -CB -g -traceback -check all -ftrapuv -fpe0 -ftz -I/usr/local/mpi/MPICH-3.3.1-intel/include -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include -DNETCDF -DUWM_STATS -DUWM_MICRO_CHANGES -DPNNL_STATS -DUWM_MISC /home/jenkins/workspace/sam_micro_drizzle_intel_test/SRC/RAD_CAM/shr_kind_mod.f90; Error: A license for Comp-FL is not available now (-15,570,115). A connection to the license server could not be made. You should make sure that your license daemon process is running: both an lmgrd process and an INTEL process should be running if your license limits you to a specified number of licenses in use at a time. Also, check to see if the wrong port@host or the wrong license file is being used, or if the port or hostname in the license file has changed. License file(s) used were (in this order): Error: A license for Comp-FL is not available now (-15,570,115). Error: A license for Comp-FL is not available now (-15,570,115). A connection to the license server could not be made. You should make sure that your license daemon process is running: both an A connection to the license server could not be made. You should lmgrd process and an INTEL process should be running make sure that your license daemon process is running: both an if your license limits you to a specified number of licenses in use lmgrd process and an INTEL process should be running at a time. Also, check to see if the wrong port@host or the wrong if your license limits you to a specified number of licenses in use license file is being used, or if the port or hostname in the license at a time. Also, check to see if the wrong port@host or the wrong file has changed. license file is being used, or if the port or hostname in the license License file(s) used were (in this order): file has changed. License file(s) used were (in this order): Error: A license for Comp-FL is not available now (-15,570,115). A connection to the license server could not be made. You should make sure that your license daemon process is running: both an lmgrd process and an INTEL process should be running if your license limits you to a specified number of licenses in use at a time. Also, check to see if the wrong port@host or the wrong license file is being used, or if the port or hostname in the license file has changed. License file(s) used were (in this order): ** 1. /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/../../Licenses ** 2. /home/jenkins/Licenses ** 3. /home/jenkins/intel/licenses ** 4. /opt/intel/licenses/USE_SERVER.lic ** 5. /opt/intel/licenses/l_49CPRJ55.lic ** 6. /Users/Shared/Library/Application Support/Intel/Licenses ** 7. /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/*.lic Please refer http://software.intel.com/sites/support/ for more information.. ** 1. /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/../../Licenses ** 1. /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/../../Licenses ** 2. /home/jenkins/Licenses ** 2. /home/jenkins/Licenses ** 3. /home/jenkins/intel/licenses ** 3. /home/jenkins/intel/licenses ** 4. /opt/intel/licenses/USE_SERVER.lic ** 4. /opt/intel/licenses/USE_SERVER.lic ** 5. /opt/intel/licenses/l_49CPRJ55.lic ** 5. /opt/intel/licenses/l_49CPRJ55.lic ** 6. /Users/Shared/Library/Application Support/Intel/Licenses ** 6. /Users/Shared/Library/Application Support/Intel/Licenses ** 7. /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/*.lic ** 7. /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/*.lic Please refer http://software.intel.com/sites/support/ for more information.. Please refer http://software.intel.com/sites/support/ for more information.. ** 1. /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/../../Licenses ** 2. /home/jenkins/Licenses ** 3. /home/jenkins/intel/licenses ** 4. /opt/intel/licenses/USE_SERVER.lic ** 5. /opt/intel/licenses/l_49CPRJ55.lic ** 6. /Users/Shared/Library/Application Support/Intel/Licenses ** 7. /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/*.lic Please refer http://software.intel.com/sites/support/ for more information.. ifort: error #10052: could not checkout FLEXlm license ifort: error #10052: could not checkout FLEXlm license ifort: error #10052: could not checkout FLEXlm license ifort: error #10052: could not checkout FLEXlm license gmake: *** [/home/jenkins/workspace/sam_micro_drizzle_intel_test/Makefile:697: advection.o] Error 1 gmake: *** Waiting for unfinished jobs.... gmake: *** [/home/jenkins/workspace/sam_micro_drizzle_intel_test/Makefile:697: shr_kind_mod.o] Error 1 gmake: *** [/home/jenkins/workspace/sam_micro_drizzle_intel_test/Makefile:701: MISR_simulator.o] Error 1 gmake: *** [/home/jenkins/workspace/sam_micro_drizzle_intel_test/Makefile:699: domain.o] Error 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run SAM) Stage "Run SAM" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + cp runsam.log /home/jenkins/test_logs/sam_micro_drizzle_intel_test/ cp: cannot stat ‘runsam.log’: No such file or directory [Pipeline] } [Pipeline] // script Error when executing always post condition: hudson.AbortException: script returned exit code 1 at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.handleExit(DurableTaskStep.java:659) at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.check(DurableTaskStep.java:605) at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.run(DurableTaskStep.java:549) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE