Console Output
+ source /etc/profile.d/larson-group.sh
++ export PATH MANPATH LD_LIBRARY_PATH
++ export SVNROOT=http://carson.math.uwm.edu/repos
++ SVNROOT=http://carson.math.uwm.edu/repos
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z
++ LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z
++ source /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ LD_LIBRARY_PATH=:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib
++ LD_LIBRARY_PATH=:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib
++ export GFORTRAN_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-gfortran
++ GFORTRAN_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-gfortran
++ export GFORTRAN_NETCDF_C=/usr/local/NETCDF-C-4.8.0-gfortran
++ GFORTRAN_NETCDF_C=/usr/local/NETCDF-C-4.8.0-gfortran
++ export GFORTRAN_MPICH=/usr/local/mpi/MPICH-3.3.1-gfortran
++ GFORTRAN_MPICH=/usr/local/mpi/MPICH-3.3.1-gfortran
++ LD_LIBRARY_PATH=:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib
++ LD_LIBRARY_PATH=:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib
++ export IFORT_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-ifort
++ IFORT_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-ifort
++ export IFORT_NETCDF_C=/usr/local/NETCDF-C-4.8.0-ifort
++ IFORT_NETCDF_C=/usr/local/NETCDF-C-4.8.0-ifort
++ export IFORT_MPICH=/usr/local/mpi/MPICH-3.3.1-intel
++ IFORT_MPICH=/usr/local/mpi/MPICH-3.3.1-intel
++ LD_LIBRARY_PATH=:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib
++ LD_LIBRARY_PATH=:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib
+++ uname -s
+++ uname -m
++ export NVARCH=Linux_x86_64
++ NVARCH=Linux_x86_64
++ export NVCOMPILERS=/opt/nvidia/hpc_sdk
++ NVCOMPILERS=/opt/nvidia/hpc_sdk
++ export MANPATH=:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/man
++ MANPATH=:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/man
++ export CUDADIR=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/cuda/
++ CUDADIR=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/cuda/
++ export PGIFORTRAN_MPICH=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5/
++ PGIFORTRAN_MPICH=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5/
++ export PGI_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-pgi
++ PGI_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-pgi
++ export PGI_NETCDF_C=/usr/local/NETCDF-C-4.8.0-pgi
++ PGI_NETCDF_C=/usr/local/NETCDF-C-4.8.0-pgi
++ export PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin
++ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin
++ export PATH=/usr/lib/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin
++ PATH=/usr/lib/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin
++ export GNU_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-gfortran
++ GNU_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-gfortran
++ export GNU_NETCDF_C=/usr/local/NETCDF-C-4.8.0-gfortran
++ GNU_NETCDF_C=/usr/local/NETCDF-C-4.8.0-gfortran
++ export GNU_MPICH=/usr/local/mpi/MPICH-3.3.1-gfortran
++ GNU_MPICH=/usr/local/mpi/MPICH-3.3.1-gfortran
++ export INTEL_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-ifort
++ INTEL_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-ifort
++ export INTEL_NETCDF_C=/usr/local/NETCDF-C-4.8.0-ifort
++ INTEL_NETCDF_C=/usr/local/NETCDF-C-4.8.0-ifort
++ export INTEL_MPICH=/usr/local/mpi/MPICH-3.3.1-intel
++ INTEL_MPICH=/usr/local/mpi/MPICH-3.3.1-intel
++ export NVHPC_MPICH=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5/
++ NVHPC_MPICH=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5/
++ export NVHPC_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-pgi
++ NVHPC_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-pgi
++ export NVHPC_NETCDF_C=/usr/local/NETCDF-C-4.8.0-pgi
++ NVHPC_NETCDF_C=/usr/local/NETCDF-C-4.8.0-pgi
+ module load nvhpc netcdf-fortran mpich
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./Build nvhpc
Using nvhpc compiler
if ! ( -d /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_2D ) mkdir /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_2D
if ! ( -d /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_3D ) mkdir /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_3D
if ! ( -d /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_MOMENTS ) mkdir /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_MOMENTS
if ! ( -d /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_STAT ) mkdir /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_STAT
if ! ( -d /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_MOVIES ) mkdir /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_MOVIES
if ! ( -d /home/jenkins/workspace/sam_clubb_nvhpc_build/RESTART ) mkdir /home/jenkins/workspace/sam_clubb_nvhpc_build/RESTART
if ! ( -d /home/jenkins/workspace/sam_clubb_nvhpc_build/OBJ ) mkdir /home/jenkins/workspace/sam_clubb_nvhpc_build/OBJ
if ! ( -d OUT_2D ) ln -s /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_2D OUT_2D
if ! ( -d OUT_3D ) ln -s /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_3D OUT_3D
if ! ( -d OUT_MOMENTS ) ln -s /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_MOMENTS OUT_MOMENTS
if ! ( -d OUT_STAT ) ln -s /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_STAT OUT_STAT
if ! ( -d OUT_MOVIES ) ln -s /home/jenkins/workspace/sam_clubb_nvhpc_build/OUT_MOVIES OUT_MOVIES
if ! ( -d RESTART ) ln -s /home/jenkins/workspace/sam_clubb_nvhpc_build/RESTART RESTART
if ! ( -d OBJ ) ln -s /home/jenkins/workspace/sam_clubb_nvhpc_build/OBJ OBJ
cat
if ( -e /home/jenkins/workspace/sam_clubb_nvhpc_build/OBJ/MICRO_RAD_OPTIONS ) then
cmp -s /home/jenkins/workspace/sam_clubb_nvhpc_build/OBJ/MICRO_RAD_OPTIONS MICRO_RAD_OPTIONS.new
if ( 0 != 0 ) then
endif
mv -f MICRO_RAD_OPTIONS.new /home/jenkins/workspace/sam_clubb_nvhpc_build/OBJ/MICRO_RAD_OPTIONS
cd /home/jenkins/workspace/sam_clubb_nvhpc_build/OBJ
if ( ! ( -e Filepath ) ) then
gmake -j4 -f /home/jenkins/workspace/sam_clubb_nvhpc_build/Makefile
CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl CAUTION: "clubb_sgs.F90" does not match "" in Id tag.
/home/jenkins/workspace/sam_clubb_nvhpc_build/SRC/SGS_CLUBB/clubb_sgs.F90
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1910 : um(i,j,:), vm(i,j,:), upwp(i,j,:), vpwp(i,j,:), up2(i,j,:), vp2(i,j,:), up3(i,j,:), vp3(i,j,:), & ! In/out
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1920 : wp2rtp(i,j,:), wp2thlp(i,j,:), uprcp(i,j,:), vprcp(i,j,:), rc_coef(i,j,:), wp4(i,j,:), & ! In/out
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1921 : wpup2(i,j,:), wpvp2(i,j,:), wp2up2(i,j,:), wp2vp2(i,j,:), ice_supersat_frac(i,j,:), & ! In/out
CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters.
/home/jenkins/workspace/sam_clubb_nvhpc_build/SRC/SGS_CLUBB/clubb_sgs.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl CAUTION: "clubb_silhs_vars.F90" does not match "" in Id tag.
/home/jenkins/workspace/sam_clubb_nvhpc_build/SRC/SGS_CLUBB/clubb_silhs_vars.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl CAUTION: "clubbvars.F90" does not match "" in Id tag.
/home/jenkins/workspace/sam_clubb_nvhpc_build/SRC/SGS_CLUBB/clubbvars.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl CAUTION: "stat_clubb.F90" does not match "" in Id tag.
/home/jenkins/workspace/sam_clubb_nvhpc_build/SRC/SGS_CLUBB/stat_clubb.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
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