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Started by user admin Obtained jenkins_tests/sam_clubb_pgi_build/Jenkinsfile from git https://github.com/larson-group/sam_clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/sam_clubb_pgi_build [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/sam_clubb_pgi_build/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 217f62a08714b0e73873edc060674296cff18ce3 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 217f62a08714b0e73873edc060674296cff18ce3 # timeout=10 Commit message: "Autoupdated CLUBB_core Commit 650cd4c0dc90ff1c184e4617092fbc9c1c2a657e Author: Gunther Huebler Date: Sun Mar 24 12:54:53 2024 -0500 Adding sum part to comment" > git rev-list --no-walk 217f62a08714b0e73873edc060674296cff18ce3 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Edit Makefile) [Pipeline] sh + sed -i 's/FFLAGS += -I.*/FFLAGS += -I${INC_MPI} -I${INC_NETCDF} -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART/g' Makefile [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Default Case) [Pipeline] sh + sed -i 's/nstop.*/nstop = 6,/g' DYCOMS_RF02/prm [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + ./Build if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/RESTART ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/RESTART if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OBJ ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OBJ if ! ( -d OUT_2D ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D OUT_2D if ! ( -d OUT_3D ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D OUT_3D if ! ( -d OUT_MOMENTS ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS OUT_MOMENTS if ! ( -d OUT_STAT ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT OUT_STAT if ! ( -d OUT_MOVIES ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES OUT_MOVIES if ! ( -d RESTART ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/RESTART RESTART if ! ( -d OBJ ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OBJ OBJ cat if ( -e /home/jenkins/workspace/sam_clubb_pgi_build/OBJ/MICRO_RAD_OPTIONS ) then cmp -s /home/jenkins/workspace/sam_clubb_pgi_build/OBJ/MICRO_RAD_OPTIONS MICRO_RAD_OPTIONS.new if ( 0 != 0 ) then endif mv -f MICRO_RAD_OPTIONS.new /home/jenkins/workspace/sam_clubb_pgi_build/OBJ/MICRO_RAD_OPTIONS cd /home/jenkins/workspace/sam_clubb_pgi_build/OBJ if ( ! ( -e Filepath ) ) then gmake -j4 -f /home/jenkins/workspace/sam_clubb_pgi_build/Makefile /opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/advance_windm_edsclrm_module.F90; /opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/pdf_closure_module.F90; /opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/advance_xm_wpxp_module.F90; /opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/advance_wp2_wp3_module.F90; NVFORTRAN-W-0170-PGI Fortran extension: '&' required as the first character of a continued string literal (/home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/advance_windm_edsclrm_module.F90: 599) /opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/output_netcdf.F90; NVFORTRAN-S-0000-Internal compiler error. memsym_of_ast:unexp.ast 6880 (/home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/output_netcdf.F90: 892) Lowering Error: symbol z$sd is an inconsistent array descriptor NVFORTRAN-F-0000-Internal compiler error. Errors in Lowering 1 (/home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/output_netcdf.F90: 932) NVFORTRAN/x86-64 Linux 23.7-0: compilation aborted gmake: *** [/home/jenkins/workspace/sam_clubb_pgi_build/Makefile:699: output_netcdf.o] Error 2 gmake: *** Waiting for unfinished jobs.... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run SAM) Stage "Run SAM" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + cat runsam.log cat: runsam.log: No such file or directory [Pipeline] echo SAM did not create a log. [Pipeline] sh + cp runsam.log /home/jenkins/test_logs/sam_clubb_pgi_build/ cp: cannot stat 'runsam.log': No such file or directory [Pipeline] } [Pipeline] // script Error when executing always post condition: Also: org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: db056964-db01-40e9-ac0f-6d4710fd6651 hudson.AbortException: script returned exit code 1 at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.handleExit(DurableTaskStep.java:668) at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.check(DurableTaskStep.java:614) at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.run(DurableTaskStep.java:555) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539) at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at java.base/java.lang.Thread.run(Thread.java:840) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE