+ bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_test; csh nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh; exit 0'
Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/config_compsets.xml
Automatically adding SIAC to compset
Automatically adding SESP to compset
Compset forcing is
ATM component is cam5 physics:
LND component is clm4.5 physics:clm4.5 Satellite phenology:
ICE component is prescribed cice:
OCN component is DOCN prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
IAC component is Stub iac component
ESP component is Stub external system processing (ESP) component
Pes specification file is /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/allactive/config_pesall.xml
Machine is nelson
Pes setting: grid match is a%ne16np4_
Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7
Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP
Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64}
Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1}
Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0}
Pes setting: pstrid is {}
Pes other settings: {}
Pes comments: none
Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP
Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7
Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv']
No charge_account info available, using value from PROJECT
e3sm model version found: aba57a9
Batch_system_type is none
Creating Case directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts
ERROR: No variable BASELINE_ROOT found in case
ERROR: No variable CCSM_CPRNC found in case
setting case file to env_batch.xml
ERROR: No queues found
/home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace
/home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.st_archive
Creating file case.st_archive
Creating file .case.run.sh
Creating user_nl_xxx files for components and cpl
If an old case build already exists, might want to run 'case.build --clean' before building
Generating component namelists as part of setup
Creating component namelists
2021-01-22 04:54:32 atm
Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml
2021-01-22 04:54:33 lnd
Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml
2021-01-22 04:54:33 ice
Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml
2021-01-22 04:54:33 ocn
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml
2021-01-22 04:54:33 rof
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml
2021-01-22 04:54:33 glc
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml
2021-01-22 04:54:33 wav
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml
2021-01-22 04:54:33 iac
Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml
2021-01-22 04:54:33 esp
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml
2021-01-22 04:54:33 cpl
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml
Finished creating component namelists
You can now run './preview_run' to get more info on how your case will be run
Building case in directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts
sharedlib_only is False
model_only is False
Generating component namelists as part of build
Creating component namelists
2021-01-22 04:54:35 atm
Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml
2021-01-22 04:54:35 lnd
Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml
2021-01-22 04:54:36 ice
Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml
2021-01-22 04:54:36 ocn
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml
2021-01-22 04:54:36 rof
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml
2021-01-22 04:54:36 glc
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml
2021-01-22 04:54:36 wav
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml
2021-01-22 04:54:36 iac
Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml
2021-01-22 04:54:36 esp
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml
2021-01-22 04:54:36 cpl
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml
Finished creating component namelists
Building gptl with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gptl.bldlog.210122-045435
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.gptl
Component gptl build complete with 1 warnings
Building mct with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/mct.bldlog.210122-045435
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.mct
Building pio with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/pio.bldlog.210122-045435
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/csm_share.bldlog.210122-045435
Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.csm_share
Component csm_share build complete with 4 warnings
- Building atm Library
Building atm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/atm.bldlog.210122-045435
- Building lnd Library
Building lnd with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd.bldlog.210122-045435
- Building ice Library
Building ice with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/ice.bldlog.210122-045435
- Building ocn Library
Building ocn with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/ocn.bldlog.210122-045435
- Building rof Library
Building rof with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/rof.bldlog.210122-045435
- Building glc Library
Building glc with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/glc.bldlog.210122-045435
- Building wav Library
Building wav with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/wav.bldlog.210122-045435
- Building iac Library
Building iac with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/iac.bldlog.210122-045435
- Building esp Library
Building esp with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/esp.bldlog.210122-045435
swav built in 0.539386 seconds
sesp built in 0.528811 seconds
sglc built in 0.587492 seconds
siac built in 0.584749 seconds
srof built in 1.132953 seconds
docn built in 1.136571 seconds
Component ice build complete with 9 warnings
Component ice build complete with 9 warnings
cice built in 20.300789 seconds
Error: Syntax error in argument list at (1)
Error: Syntax error in argument list at (1)
Component atm build complete with 2 warnings
Error: Syntax error in argument list at (1)
Error: Syntax error in argument list at (1)
Component atm build complete with 2 warnings
cam built in 29.052393 seconds
Component lnd build complete with 6 warnings
Component lnd build complete with 6 warnings
clm built in 73.794273 seconds
ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/atm.bldlog.210122-045435
The case.build step failed.
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