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Started by an SCM change Obtained jenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfile from git https://github.com/larson-group/e3sm.git [Pipeline] Start of Pipeline [Pipeline] node Running on malan in /home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/e3sm.git > git init /home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision daee4c641d33548494415150753cd8fb1b62e800 (refs/remotes/origin/clubb_silhs_devel) Commit message: "ESM_CLUBB_diag was changed along with CESM_CLUBB_diag, otherwise it always confused us." > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f daee4c641d33548494415150753cd8fb1b62e800 # timeout=10 > git rev-list --no-walk c41c1e3f9e700c406950479d82416172e568f487 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + git submodule init Submodule 'cime' (https://github.com/ESMCI/cime.git) registered for path 'cime' Submodule 'cosp2' (git@github.com:CFMIP/COSPv2.0.git) registered for path 'components/eam/src/physics/cosp2/external' Submodule 'rrtmgp' (git@github.com:RobertPincus/rte-rrtmgp.git) registered for path 'components/eam/src/physics/rrtmgp/external' Submodule 'fates' (git@github.com:NGEET/fates.git) registered for path 'components/elm/src/external_models/fates' Submodule 'alm-mpp' (git@github.com:MPP-LSM/MPP.git) registered for path 'components/elm/src/external_models/mpp' Submodule 'sbetr' (git@github.com:BeTR-biogeochemistry-modeling/sbetr.git) registered for path 'components/elm/src/external_models/sbetr' Submodule 'components/mpas-source' (https://github.com/MPAS-Dev/MPAS-Model.git) registered for path 'components/mpas-source' Submodule 'externals/YAKL' (git@github.com:mrnorman/YAKL.git) registered for path 'externals/YAKL' Submodule 'externals/cub' (git@github.com:NVlabs/cub.git) registered for path 'externals/cub' Submodule 'externals/kokkos' (https://github.com/E3SM-Project/kokkos.git) registered for path 'externals/kokkos' Submodule 'externals/scorpio' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio' Submodule 'externals/scorpio_classic' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio_classic' + git submodule update Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/cime'... Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/cosp2/external'... Host key verification failed. fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:CFMIP/COSPv2.0.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/cosp2/external' failed Failed to clone 'components/eam/src/physics/cosp2/external'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/rrtmgp/external'... Host key verification failed. fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:RobertPincus/rte-rrtmgp.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/rrtmgp/external' failed Failed to clone 'components/eam/src/physics/rrtmgp/external'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/fates'... Host key verification failed. fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:NGEET/fates.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/fates' failed Failed to clone 'components/elm/src/external_models/fates'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/mpp'... Host key verification failed. fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:MPP-LSM/MPP.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/mpp' failed Failed to clone 'components/elm/src/external_models/mpp'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/sbetr'... Host key verification failed. fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:BeTR-biogeochemistry-modeling/sbetr.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/sbetr' failed Failed to clone 'components/elm/src/external_models/sbetr'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/mpas-source'... Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/YAKL'... Host key verification failed. fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:mrnorman/YAKL.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/YAKL' failed Failed to clone 'externals/YAKL'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/cub'... Host key verification failed. fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:NVlabs/cub.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/cub' failed Failed to clone 'externals/cub'. Retry scheduled Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/kokkos'... Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/scorpio'... Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/scorpio_classic'... Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/cosp2/external'... Host key verification failed. fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. fatal: clone of 'git@github.com:CFMIP/COSPv2.0.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/cosp2/external' failed Failed to clone 'components/eam/src/physics/cosp2/external' a second time, aborting [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) Stage "Remove Old Output" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run) Stage "Run" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + gzip -d '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.bldlog.*.gz' gzip: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.bldlog.*.gz: No such file or directory [Pipeline] echo E3SM build logs were not made. [Pipeline] sh + gzip -d '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run/atm.log.*.gz' gzip: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run/atm.log.*.gz: No such file or directory [Pipeline] echo Run logs were not all made. [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE