Console Output

+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7,
netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ run_scripts/run_clubb_conv_test.bash
Creating initial bomex 90-min run... Done!
Restarting bomex with time step 1 seconds... Done!
Traceback (most recent call last):
  File "<string>", line 9, in <module>
IndexError: index -1 is out of bounds for axis 0 with size 0
Restarting bomex with time step 2 seconds... Done!
Traceback (most recent call last):
  File "<string>", line 9, in <module>
IndexError: index -1 is out of bounds for axis 0 with size 0
Restarting bomex with time step 4 seconds... Done!
Traceback (most recent call last):
  File "<string>", line 9, in <module>
IndexError: index -1 is out of bounds for axis 0 with size 0
Restarting bomex with time step 8 seconds... Done!
Traceback (most recent call last):
  File "<string>", line 9, in <module>
IndexError: index -1 is out of bounds for axis 0 with size 0
Restarting bomex with time step 16 seconds... Done!
Traceback (most recent call last):
  File "<string>", line 9, in <module>
IndexError: index -1 is out of bounds for axis 0 with size 0
Restarting bomex with time step 30 seconds... Done!
Traceback (most recent call last):
  File "<string>", line 9, in <module>
IndexError: index -1 is out of bounds for axis 0 with size 0
Restarting bomex with time step 60 seconds... Done!
Traceback (most recent call last):
  File "<string>", line 9, in <module>
IndexError: index -1 is out of bounds for axis 0 with size 0
Restarting bomex with time step 120 seconds... Done!
Traceback (most recent call last):
  File "<string>", line 9, in <module>
IndexError: index -1 is out of bounds for axis 0 with size 0
Restarting bomex with time step 240 seconds... Done!
Traceback (most recent call last):
  File "<string>", line 9, in <module>
IndexError: index -1 is out of bounds for axis 0 with size 0
<string>:10: UserWarning: loadtxt: input contained no data: "convergence.data"
/usr/local/lib/python3.10/dist-packages/numpy/_core/fromnumeric.py:4008: RuntimeWarning: Degrees of freedom <= 0 for slice
  return _methods._var(a, axis=axis, dtype=dtype, out=out, ddof=ddof,
/usr/local/lib/python3.10/dist-packages/numpy/_core/_methods.py:175: RuntimeWarning: invalid value encountered in divide
  arrmean = um.true_divide(arrmean, div, out=arrmean,
/usr/local/lib/python3.10/dist-packages/numpy/_core/_methods.py:210: RuntimeWarning: invalid value encountered in scalar divide
  ret = ret.dtype.type(ret / rcount)
Generating plot...
slope =  nan
CLUBB failed to converge!