Changes

Deleted the old compile directory and docs directory (#1315)

- The old mkmf/make compile directory, the bash based compile scripts are no longer needed now that we have CMake
- Moved `convert_acc_to_omp.bash` to utilities/ directory
- The docs directory had an old copy of the website, but the website is backed up to a local drive on Carson

Update README, BUILD.md, and pyplotgen README.md (#1309)

Update Jenkinsfile to match moved file

- utilities/convert_acc_to_omp.bash

Fixing bug that caused incorrect times to be written to netcdf in cases where stats_tout (output interval) > dt_main (timestep). This is BIT_CHANGING because of that, but only for the time variable (no field differences), and only for cases where we don't output each timestep.

First set of commits for the new loss driver.

Improvements

Batching capabilities

Lot's of cleanup, simplifications, and consolidation

More testing

Python interfaces for the loss driver

Interface for tuner and tuner with modes.

Nice updates

Missed file

Little updates to fix inconsistencies in the plots and averaging ranges

Adding a script that converts sam and coamps netcdf files to a clubb named version, including things that need to be calculated. This fixes a bug where fields were being averaged before being calculated, see https://github.com/larson-group/clubb/issues/1284, but is currently only wired up in the new tuner and the dash app plotter

Making some things public for nvhpc

Organization and consistency test fix

Adding taylor diagram to tune tab, this needs taylor metrics to be computed so the loss driver needed to output this info.

Adding more fancy loss functions based on Taylor metrics and a way to switch how the loss is computed in the dash tuner

Making NaN in code not an issue

Mostly dash app improvements to plotting, also made subwindows for tuning

Tuner tracking by case

Removing stats time-variance code

Simplifying loss driver output - now loss metrics are output explicitly rather than as packaged taylor_metrics and having different versions for subwindows and such

Mainly ui updates and small simplifications

Improving comments and cleaning things up a bit

Removing strictness on stats window vs output interval, and adding a stats consistency test to tests for issues with batch size and output frequency and the windowing mode

Fixing openmp bug and making incomplete stats intervals not output, as it was before

Making jenkins test use standard stats, and fixing tiny bug that caused error running with debug+no rcp2 stats

Adding gate around bindiff, there's an edge case where a cosmetic diff can trigger a full-diff even in a failed case, which should otherwise be considered BFB and skipped.

Adding some README entries for the dash app and a python requirements file

Adding comments and little bug fix to dash app

Update to loss consistency test, making it simpler since stats consistency test covers most things. Also adding it to the stats consistency jenkins test since it is still similar

Cleanup and code consolidation, new jenkins test for tuner

Adding comments

Fixing little bugs