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/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:159:11:
159 | theta, & ! Liquid potential temperature sounding [K]
| 1
Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:161:7:
161 | u, & ! u wind sounding [m/s]
| 1
Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:163:8:
163 | ug, & ! u geostrophic wind sounding [m/s]
| 1
Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:162:7:
162 | v, & ! v wind sounding [m/s]
| 1
Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:164:8:
164 | vg, & ! v geostrophic wind sounding [m/s]
| 1
Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:158:7:
158 | z, & ! Altitude [m]
| 1
Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
[ 83%] Linking Fortran static library libinput_fields_lib.a
[ 83%] Built target input_fields_lib
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o
/home/jenkins/workspace/clubb_restart/src/Microphys/ice_dfsn_module.F90:282:27:
214 | do k = gr%nzt, 1, -1
| 2
......
282 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) + dmass_ice_cryst(i,k)
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_restart/src/Microphys/ice_dfsn_module.F90:296:27:
214 | do k = gr%nzt, 1, -1
| 2
......
296 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k)
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o
[ 85%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o
[ 86%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o
[ 86%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
[ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o
[ 87%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[ 87%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[ 87%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/cubic_solve_tests.F90.o
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/cubic_solve_tests.F90:179:16:
179 | if ( any( aimag( roots_cmp(k,:) ) /= zero ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 87%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o
[ 87%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o
[ 87%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o
[ 87%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:407:27:
407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:406:22:
406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:462:22:
462 | if ( any( field_rev_rev /= field ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:221:27:
221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:220:22:
220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:275:22:
275 | if ( any( field_rev_rev /= field ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 88%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o
[ 88%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
[ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o
[ 89%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o
[ 89%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[ 89%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o
[ 89%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o
[ 89%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o
[ 89%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o
[ 90%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o
[ 91%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o
[ 91%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
[ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o
[ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/mu_sigma_hm_tests.F90:511:17:
511 | if ( any( .not. l_pass_test_3 ) ) then
| ^
Warning: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/mu_sigma_hm_tests.F90:137:19:
137 | l_pass_test_3, & ! Flag for passing test 3
| ^
note: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' was declared here
[ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o
[ 92%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o
[ 92%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o
[ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o
[ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o
/home/jenkins/workspace/clubb_restart/src/Benchmark_cases/bomex.F90:22:48:
22 | gr, rtm, l_readiopdata, &
| 1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[ 94%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o
[ 94%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[ 95%] Linking Fortran static library libbenchmark_cases_lib.a
[ 95%] Built target benchmark_cases_lib
[ 95%] Linking Fortran static library libG_unit_test_lib.a
[ 95%] Built target G_unit_test_lib
[ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[ 96%] Linking Fortran static library libmicrophys_lib.a
[ 96%] Built target microphys_lib
[ 96%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
[ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[ 98%] Linking Fortran executable G_unit_tests
[ 98%] Built target G_unit_tests
[ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
/home/jenkins/workspace/clubb_restart/src/clubb_driver.F90:5542:76:
5542 | p_sfc, rtm_sfc, rtm, l_readiopdata, & !thlm_sfc, &
| 1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver.F90:255:28:
255 | is_finite_core_value = ( value == value ) .and. ( abs( value ) <= huge( value ) )
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 98%] Linking Fortran static library libclubb_driver_lib.a
[ 98%] Built target clubb_driver_lib
[ 99%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
[ 99%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:273:14:
273 | if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:278:14:
278 | if ( any( test_correlation /= reference_correlation ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:283:14:
283 | if ( any( test_std_ratio /= reference_std_ratio ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:288:14:
288 | if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:293:14:
293 | if ( any( test_bias_norm /= reference_bias_norm ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:512:14:
512 | if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:521:14:
521 | any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:520:14:
520 | any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:519:14:
519 | any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:518:14:
518 | any( reinit_correlation_1 /= reinit_correlation_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:517:14:
517 | if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:431:14:
431 | if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:371:14:
371 | any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:370:14:
370 | any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:369:14:
369 | any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:368:14:
368 | any( manual_correlation_2 /= manual_correlation_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:367:14:
367 | if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[100%] Linking Fortran executable clubb_thread_test
[100%] Linking Fortran executable clubb_standalone
[100%] Linking Fortran executable clubb_driver_test
[100%] Linking Fortran executable clubb_standalone_loss
[100%] Built target clubb_thread_test
[100%] Built target clubb_driver_test
[100%] Built target clubb_standalone
[100%] Built target clubb_standalone_loss
[100%] Linking Fortran executable clubb_loss_driver_test
[100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o
[100%] Built target clubb_loss_driver_test
[100%] Linking Fortran executable clubb_tuner
[100%] Built target clubb_tuner
Install the project...
-- Install configuration: "Release"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_tuner
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/G_unit_tests
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_thread_test
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_driver_test
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone_loss
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_loss_driver_test
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
[Pipeline] catchError
[Pipeline] {
[Pipeline] sh
+ python3 tests/run_restart_test.py bomex -multicol 4
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_restart/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing python requirements into /home/jenkins/workspace/clubb_restart/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 12 packages in 313ms
Downloading pygments (1.2MiB)
Downloading cftime (1.6MiB)
Downloading numpy (16.0MiB)
Downloading meson (1.1MiB)
Downloading netcdf4 (10.1MiB)
Downloaded cftime
Downloaded netcdf4
Downloaded meson
Downloaded pygments
Downloaded numpy
Prepared 12 packages in 526ms
Installed 12 packages in 33ms
+ certifi==2026.10.19
+ cftime==1.6.6.1
+ iniconfig==2.3.1
+ meson==1.12.1
+ netcdf4==1.7.5
+ ninja==1.13.2
+ numpy==2.5.4
+ packaging==26.3
+ pluggy==1.7.0
+ pygments==2.21.0
+ pytest==9.1.1
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_restart/.venv-python/bin/python
Running standard bomex case... Done!
Running restart bomex case from halfway point... Done!
Results bit-for-bit.
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
Running on nelson in /home/jenkins/workspace/clubb_restart
[Pipeline] // node
[Pipeline] }
[Pipeline] {
[Pipeline] // stage
[Pipeline] }
[Pipeline] checkout
The recommended git tool is: git
DEPRECATED: The 'Wipe out repository & force clone' extension is deprecated for Pipeline jobs. Pipeline users should use the deleteDir() step instead.
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/clubb.git
> git init /home/jenkins/workspace/clubb_restart # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
> git --version # timeout=10
> git --version # 'git version 2.43.0'
using GIT_ASKPASS to set credentials larsongroupsysadmin github token
> git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision 8369512fcc6487603491e12ac13376de2aec2a0b (refs/remotes/origin/master)
> git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f 8369512fcc6487603491e12ac13376de2aec2a0b # timeout=10
Commit message: "Clubb params 1d to 2d fix (#1392)"
[Pipeline] withEnv
[Pipeline] {
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ . /opt/lmod//lmod/lmod/init/profile
+++ '[' -z '' ']'
+++ LMOD_ALLOW_ROOT_USE=yes
+++ '[' -n '' ']'
+++ '[' yes '!=' yes ']'
+++ '[' -z '' ']'
+++ export MODULEPATH_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles
+++ MODULEPATH_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles
+++ export USER=jenkins
+++ USER=jenkins
++++ uname
+++ export LMOD_sys=Linux
+++ LMOD_sys=Linux
+++ '[' -z '' ']'
+++ '[' -f /etc/lmod/.modulespath ']'
+++ LMOD_MODULEPATH_INIT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/.modulespath
+++ '[' -f /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/.modulespath ']'
++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto --append MODULEPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core
+++ export MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core
+++ MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core
++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto --append MODULEPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core
+++ export MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core
+++ MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core
+++ '[' -n '' ']'
+++ export BASH_ENV=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash
+++ BASH_ENV=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ export MANPATH=:
+++ MANPATH=:
++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto MANPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man
+++ export MANPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man:
+++ MANPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man:
+++ findExec READLINK_CMD /usr/bin/readlink readlink
+++ Nm=READLINK_CMD
+++ confPath=/usr/bin/readlink
+++ execNm=readlink
+++ eval READLINK_CMD=/usr/bin/readlink
++++ READLINK_CMD=/usr/bin/readlink
+++ '[' '!' -x /usr/bin/readlink ']'
+++ unset Nm confPath execNm
+++ findExec PS_CMD /usr/bin/ps ps
+++ Nm=PS_CMD
+++ confPath=/usr/bin/ps
+++ execNm=ps
+++ eval PS_CMD=/usr/bin/ps
++++ PS_CMD=/usr/bin/ps
+++ '[' '!' -x /usr/bin/ps ']'
+++ unset Nm confPath execNm
+++ findExec EXPR_CMD /usr/bin/expr expr
+++ Nm=EXPR_CMD
+++ confPath=/usr/bin/expr
+++ execNm=expr
+++ eval EXPR_CMD=/usr/bin/expr
++++ EXPR_CMD=/usr/bin/expr
+++ '[' '!' -x /usr/bin/expr ']'
+++ unset Nm confPath execNm
+++ findExec BASENAME_CMD /usr/bin/basename basename
+++ Nm=BASENAME_CMD
+++ confPath=/usr/bin/basename
+++ execNm=basename
+++ eval BASENAME_CMD=/usr/bin/basename
++++ BASENAME_CMD=/usr/bin/basename
+++ '[' '!' -x /usr/bin/basename ']'
+++ unset Nm confPath execNm
+++ unset -f findExec
+++ '[' -f /proc/623423/exe ']'
++++ /usr/bin/readlink /proc/623423/exe
+++ my_shell=/usr/bin/bash
++++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)'
+++ my_shell=/usr/bin/bash
++++ /usr/bin/basename /usr/bin/bash
+++ my_shell=bash
+++ case ${my_shell} in
+++ '[' -f /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash ']'
+++ . /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash
++++ '[' -z '' ']'
++++ case "$-" in
++++ __lmod_vx=x
++++ '[' -n x ']'
++++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
++++ unset __lmod_vx
+++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7,
netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py
-- The Fortran compiler identification is GNU 13.1.0
-- The C compiler identification is GNU 13.1.0
-- The CXX compiler identification is GNU 13.1.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/gfortran - skipped
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiling with double precision
-- Performing Test NETCDF_ABI_COMPATIBLE
-- Performing Test NETCDF_ABI_COMPATIBLE - Success
-- SUCCESS: netcdf-fortran found.
-- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib/libnetcdff.so
-- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/include
-- Configuring done (1.2s)
-- Generating done (0.1s)
-- Build files have been written to: /home/jenkins/workspace/clubb_restart/build/gcc_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_restart/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_restart/build/gcc_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_restart/build/gcc_PRECdouble
Running CMake configure...
[ 0%] Building Fortran object src/Microphys/SCM_Activation/CMakeFiles/scm_activation_lib.dir/aer_ccn_act_k.F90.o
[ 0%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/xerbla.f.o
[ 0%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/lsame.f.o
[ 0%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ilaslc.f.o
[ 0%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ilaslr.f.o
[ 0%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sasum.f.o
[ 1%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/isamax.f.o
[ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dasum.f.o
[ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/daxpy.f.o
[ 2%] Built target clubb_lapack_shared
[ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ddot.f.o
[ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbcon.f.o
[ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbequ.f.o
[ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dcopy.f.o
[ 3%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/saxpy.f.o
[ 3%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/scopy.f.o
[ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbmv.f.o
[ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbsv.f.o
[ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbrfs.f.o
[ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbsvx.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtf2.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sdot.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtrs.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtrf.f.o
[ 5%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbcon.f.o
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/home/jenkins/workspace/clubb_restart/src/CLUBB_core/endian.F90:167:53:
167 | call mvbits( i_element, 56, 8, i_element_br, 0 )
| ^
Warning: 'i_element_br' is used uninitialized [-Wuninitialized]
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/endian.F90:159:39:
159 | integer(kind=int64) :: i_element_br
| ^
note: 'i_element_br' declared here
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/endian.F90:123:53:
123 | CALL MVBITS( i_element, 24, 8, i_element_br, 0 )
| ^
Warning: 'i_element_br' is used uninitialized [-Wuninitialized]
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/endian.F90:117:69:
117 | INTEGER(KIND=int32) :: i_element_br
| ^
note: 'i_element_br' declared here
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/home/jenkins/workspace/clubb_restart/src/CLUBB_core/penta_bicgstab_solver.F90:140:10:
140 | if ( norm_rhs == 0.0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
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[ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameters_tunable.F90.o
[ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diffusion.F90.o
[ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/saturation.F90.o
[ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pos_definite_module.F90.o
[ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/turbulent_adv_pdf.F90.o
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/remapping_module.F90:1212:43:
1212 | if(f(i,k+1)*f(i,k-1)<zero .and. df2(i,k)/=zero) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/remapping_module.F90:1106:15:
1106 | if(dm(i) == zero) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/parameters_tunable.F90:1822:30:
1822 | subroutine unpack_parameters &
| ^
Warning: 'unpack_parameters' defined but not used [-Wunused-function]
[ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calc_pressure.F90.o
[ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sigma_sqd_w_module.F90.o
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/remapping_module.F90:185:71:
185 | *( val_below + lin_spline_rho_vals(l) )/2
| ^
Warning: 'level_below' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/remapping_module.F90:129:17:
129 | level_below, & ! The altitude of the level or spline connection point below [m]
| ^
note: 'level_below' was declared here
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/remapping_module.F90:185:71:
185 | *( val_below + lin_spline_rho_vals(l) )/2
| ^
Warning: 'val_below' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/remapping_module.F90:128:15:
128 | val_below, & ! The rho value of the level or spline connection point below [kg/m^3]
| ^
note: 'val_below' was declared here
[ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_netcdf.F90.o
[ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_hybrid_pdf_main.F90.o
[ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf_main.F90.o
[ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/fill_holes.F90.o
[ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_helper_module.F90.o
[ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp3_module.F90.o
[ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/numerical_check.F90.o
[ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mono_flux_limiter.F90.o
[ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/precipitation_fraction.F90.o
[ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_adaptation_module.F90.o
[ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clip_explicit.F90.o
[ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_utilities.F90.o
[ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sfc_varnce_module.F90.o
[ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mixing_length.F90.o
[ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_clubb_utilities.F90.o
[ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o
[ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/setup_clubb_pdf_params.F90.o
[ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o
[ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_wp2_wp3_module.F90.o
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_windm_edsclrm_module.F90:322:70:
322 | if ( edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) /= zero .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_windm_edsclrm_module.F90:322:14:
322 | if ( edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) /= zero .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_windm_edsclrm_module.F90:343:71:
343 | if ( wpedsclrp(i,gr%k_lb_zm,sclr_idx%iiedsclr_thl) /= zero .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_windm_edsclrm_module.F90:343:12:
343 | if ( wpedsclrp(i,gr%k_lb_zm,sclr_idx%iiedsclr_thl) /= zero .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 52%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xm_wpxp_module.F90.o
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/mixing_length.F90:1096:16:
1096 | if ( abs( dCAPE_dz_j - dCAPE_dz_j_minus_1 ) * 2 <= &
| ^
Warning: 'dcape_dz_j' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/mixing_length.F90:730:42:
730 | real( kind = core_rknd ) :: dCAPE_dz_j, dCAPE_dz_j_minus_1, dCAPE_dz_j_plus_1
| ^
note: 'dcape_dz_j' was declared here
[ 52%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp2_xpyp_module.F90.o
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_wp2_wp3_module.F90:1927:12:
1927 | if ( abs(wp2_avg_before - wp2_avg_after) > epsilon(wp2_avg_after)*1000 ) then
| ^
Warning: 'wp2_avg_before' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_wp2_wp3_module.F90:1470:20:
1470 | wp2_avg_before, &
| ^
note: 'wp2_avg_before' was declared here
[ 53%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o
[ 53%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o
[ 53%] Linking Fortran static library libclubb_core_lib.a
[ 53%] Built target clubb_core_lib
[ 53%] Building Fortran object src/CMakeFiles/text_writer_lib.dir/text_writer.F90.o
[ 53%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/kinds.F90.o
[ 53%] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o
[ 53%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic_constants.f90.o
[ 53%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjmlt.F.o
[ 53%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/parameters_KK.F90.o
[ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/conice.F.o
[ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjtq.F.o
[ 54%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_physconst.F90.o
[ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa10g.F.o
[ 54%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_planck.F90.o
[ 55%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloud_correlate.F90.o
[ 57%] Linking Fortran static library libtext_writer_lib.a
[ 57%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/AiryFunction.f90.o
[ 57%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa11g.F.o
[ 57%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12.F.o
[ 57%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_local_means.F90.o
[ 57%] Built target text_writer_lib
[ 57%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/newexp.F90.o
[ 57%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12g.F.o
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[ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa13g.F.o
[ 59%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloudg.F.o
[ 59%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic.f90.o
[ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa14g.F.o
[ 59%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp1.F.o
[ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa15.F.o
[ 59%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp2.F.o
[ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa17g.F.o
[ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18.F.o
[ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18g.F.o
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[ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/rayle.F.o
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[ 62%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21.F.o
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[ 63%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw.F.o
[ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21g.F.o
[ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22.F.o
[ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22g.F.o
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[ 63%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_ocastrndm.F90.o
[ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa25.F.o
[ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa26.F.o
[ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27.F.o
[ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27r.F.o
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[ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa28.F.o
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[ 70%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_utilities.F90.o
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[ 71%] Built target coamps_lib
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[ 72%] Linking Fortran static library libbugsrad_lib.a
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[ 72%] Built target bugsrad_lib
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[ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/est_kessler_microphys_module.F90.o
[ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/transform_to_pdf_module.F90.o
[ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_arrays.F90.o
[ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/mt95.F90.o
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/home/jenkins/workspace/clubb_restart/src/SILHS/silhs_importance_sample_module.F90:642:62:
637 | do category=1, num_importance_categories
| 2
......
642 | rand_vect(sample) < category_cumulative_probs(category+1) ) then
| 1
Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript]
[ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/lh_microphys_var_covar_module.F90.o
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[ 75%] Linking Fortran static library libmorrison_microphys_lib.a
[ 75%] Built target morrison_microphys_lib
/home/jenkins/workspace/clubb_restart/src/SILHS/latin_hypercube_driver_module.F90:1638:10:
1638 | if ( X_u_chi(sample) < (one - cloud_frac_i) ) then
| ^
Warning: 'cloud_frac_i' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/SILHS/latin_hypercube_driver_module.F90:1620:18:
1620 | cloud_frac_i
| ^
note: 'cloud_frac_i' was declared here
[ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o
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/home/jenkins/workspace/clubb_restart/src/Numerical_recipes/ran_state.f90:8:59:
8 | INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1
| 1
Warning: Integer outside symmetric range implied by Standard Fortran at (1)
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[ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o
[ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o
[ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_core/readiopdata_core_module.F90.o
[ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1470:21:
1470 | if( (bmnth>2).and. isLeapYear(byear) ) jday = jday + 1
| 1
Warning: Impure function 'isleapyear' at (1) might not be evaluated [-Wfunction-elimination]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1492:18:
1492 | if(i==2.and.isLeapYear(iyear)) days_this_month = days_this_month + 1
| 1
Warning: Impure function 'isleapyear' at (1) might not be evaluated [-Wfunction-elimination]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1038:15:
1038 | if(divT_in(i,nlev+1)==missing_value) divT_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1040:15:
1040 | if(vertdivT_in(i,nlev+1)==missing_value) vertdivT_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1042:15:
1042 | if(divT3d_in(i,nlev+1)==missing_value) divT3d_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1045:15:
1045 | if(divq_in(i,nlev+1)==missing_value) divq_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1047:15:
1047 | if(vertdivq_in(i,nlev+1)==missing_value) vertdivq_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1049:15:
1049 | if(divq3d_in(i,nlev+1)==missing_value) divq3d_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:356:13:
356 | if( ANY(Ts_in == 0.0) ) then
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:620:12:
620 | if(T_in(i,nlev+1)/=missing_value) then
| 1
Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:636:12:
636 | if(T_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:638:12:
638 | if(q_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:640:12:
640 | if(u_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:642:12:
642 | if(v_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:647:15:
647 | if(omega_in(i,nlev+1)==missing_value) omega_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:651:15:
651 | if(w_in(i,nlev+1)==missing_value) w_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:658:12:
658 | if(ug_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:660:12:
660 | if(vg_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
[ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1252:42:
1252 | character dim_name*( NF90_MAX_NAME )
| 1
Warning: Unused variable 'dim_name' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1254:33:
1254 | integer var_ndims, dim_size, dims_set, i, n, var_type
| 1
Warning: Unused variable 'dim_size' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1254:43:
1254 | integer var_ndims, dim_size, dims_set, i, n, var_type
| 1
Warning: Unused variable 'dims_set' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1254:46:
1254 | integer var_ndims, dim_size, dims_set, i, n, var_type
| 1
Warning: Unused variable 'i' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1237:60:
1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, &
| 1
Warning: Unused dummy argument 'nlev' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1237:54:
1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, &
| 1
Warning: Unused dummy argument 'ntime' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1238:23:
1238 | var, use_NF90_REAL, status, required)
| 1
Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1167:67:
1167 | subroutine get_netcdf_var1d_real( NCID, varName, var, use_NF90_REAL, &
| 1
Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:751:51:
751 | get_add_surface_data, ntime, &
| 1
Warning: Unused dummy argument 'get_add_surface_data' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:750:81:
750 | subroutine readiopdata_core_sfc( masterproc, iopfilepath, scamiop_from_global_cam, SFC_FLX_FXD, &
| 1
Warning: Unused dummy argument 'scamiop_from_global_cam' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:290:32:
290 | integer :: STATUS, i, n, nlat, nlon
| 1
Warning: Unused variable 'nlat' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:290:38:
290 | integer :: STATUS, i, n, nlat, nlon
| 1
Warning: Unused variable 'nlon' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:291:19:
291 | integer :: varID, NCID
| 1
Warning: Unused variable 'varid' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_restart/src/Input_fields/input_reader.F90:498:28:
491 | do i=1, dim_grid
| 2
......
498 | if ( grid(i) < grid(i-1) ) then
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
[ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o
[ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o
[ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o
[ 82%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o
[ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:786:28:
786 | shf_in(:) = missing_value
| ^
Warning: 'shf_in.offset' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:34:
761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:)
| ^
note: 'shf_in' declared here
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:786:28:
786 | shf_in(:) = missing_value
| ^
Warning: 'shf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:34:
761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:)
| ^
note: 'shf_in' declared here
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:786:28:
786 | shf_in(:) = missing_value
| ^
Warning: 'shf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:34:
761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:)
| ^
note: 'shf_in' declared here
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28:
787 | lhf_in(:) = missing_value
| ^
Warning: 'lhf_in.offset' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45:
761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:)
| ^
note: 'lhf_in' declared here
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28:
787 | lhf_in(:) = missing_value
| ^
Warning: 'lhf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45:
761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:)
| ^
note: 'lhf_in' declared here
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28:
787 | lhf_in(:) = missing_value
| ^
Warning: 'lhf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45:
761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:)
| ^
note: 'lhf_in' declared here
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28:
787 | lhf_in(:) = missing_value
| ^
Warning: 'lhf_in.offset' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45:
761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:)
| ^
note: 'lhf_in' declared here
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28:
787 | lhf_in(:) = missing_value
| ^
Warning: 'lhf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45:
761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:)
| ^
note: 'lhf_in' declared here
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28:
787 | lhf_in(:) = missing_value
| ^
Warning: 'lhf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45:
761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:)
| ^
note: 'lhf_in' declared here
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:788:31:
788 | tausrf_in(:) = missing_value
| ^
Warning: 'tausrf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:59:
761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:)
| ^
note: 'tausrf_in.dim[0].ubound' was declared here
[ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_module.F90.o
/home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:260:16:
260 | integer :: k
| 1
Warning: Unused variable 'k' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:264:17:
264 | qtm_forcing ! Specified total water spec. humidity tendency [kg/kg/s]
| 1
Warning: Unused variable 'qtm_forcing' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:243:31:
243 | subroutine readiopdata_frc( rtm, gr, thlm_forcing, rtm_forcing )
| 1
Warning: Unused dummy argument 'rtm' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:285:47:
285 | thlm_forcing(1:nlevels) = dtls(1:nlevels,1)
| ^
Warning: 'nlevels' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:258:22:
258 | integer :: nlevels
| ^
note: 'nlevels' was declared here
[ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:39:8:
39 | use constants_clubb, only: &
| 1
Warning: Unused parameter 'kappa' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:57:8:
57 | use input_names, only: &
| 1
Warning: Unused parameter 'omega_name' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:39:8:
39 | use constants_clubb, only: &
| 1
Warning: Unused parameter 'p0' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:165:13:
165 | p_in_Pa, & ! Pressure [Pa]
| 1
Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:160:8:
160 | rt, & ! Total water mixing ratio sounding [kg/kg]
| 1
Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:166:10:
166 | subs ! Vertical velocity sounding [m/s or Pa/s]
| 1
Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:159:11:
159 | theta, & ! Liquid potential temperature sounding [K]
| 1
Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:161:7:
161 | u, & ! u wind sounding [m/s]
| 1
Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:163:8:
163 | ug, & ! u geostrophic wind sounding [m/s]
| 1
Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:162:7:
162 | v, & ! v wind sounding [m/s]
| 1
Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:164:8:
164 | vg, & ! v geostrophic wind sounding [m/s]
| 1
Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:158:7:
158 | z, & ! Altitude [m]
| 1
Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
[ 83%] Linking Fortran static library libinput_fields_lib.a
[ 83%] Built target input_fields_lib
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/cubic_solve_tests.F90.o
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/cubic_solve_tests.F90:179:16:
179 | if ( any( aimag( roots_cmp(k,:) ) /= zero ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:407:27:
407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:406:22:
406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:462:22:
462 | if ( any( field_rev_rev /= field ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:221:27:
221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:220:22:
220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:275:22:
275 | if ( any( field_rev_rev /= field ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o
/home/jenkins/workspace/clubb_restart/src/Microphys/ice_dfsn_module.F90:282:27:
214 | do k = gr%nzt, 1, -1
| 2
......
282 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) + dmass_ice_cryst(i,k)
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_restart/src/Microphys/ice_dfsn_module.F90:296:27:
214 | do k = gr%nzt, 1, -1
| 2
......
296 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k)
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o
[ 85%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o
[ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o
[ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o
[ 87%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o
[ 87%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o
[ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o
[ 88%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
[ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
[ 88%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o
[ 88%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o
[ 89%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o
[ 90%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/mu_sigma_hm_tests.F90:511:17:
511 | if ( any( .not. l_pass_test_3 ) ) then
| ^
Warning: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_restart/src/G_unit_test_types/mu_sigma_hm_tests.F90:137:19:
137 | l_pass_test_3, & ! Flag for passing test 3
| ^
note: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' was declared here
[ 90%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o
[ 91%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[ 91%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o
[ 92%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o
[ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o
[ 93%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
[ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o
[ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o
[ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o
[ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o
[ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o
[ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o
[ 95%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
/home/jenkins/workspace/clubb_restart/src/Benchmark_cases/bomex.F90:22:48:
22 | gr, rtm, l_readiopdata, &
| 1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o
[ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[ 95%] Linking Fortran static library libbenchmark_cases_lib.a
[ 95%] Built target benchmark_cases_lib
[ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[ 95%] Linking Fortran static library libG_unit_test_lib.a
[ 95%] Built target G_unit_test_lib
[ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[ 96%] Linking Fortran static library libmicrophys_lib.a
[ 96%] Built target microphys_lib
[ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[ 97%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
[ 98%] Linking Fortran executable G_unit_tests
[ 98%] Built target G_unit_tests
[ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
/home/jenkins/workspace/clubb_restart/src/clubb_driver.F90:5542:76:
5542 | p_sfc, rtm_sfc, rtm, l_readiopdata, & !thlm_sfc, &
| 1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver.F90:255:28:
255 | is_finite_core_value = ( value == value ) .and. ( abs( value ) <= huge( value ) )
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 98%] Linking Fortran static library libclubb_driver_lib.a
[ 98%] Built target clubb_driver_lib
[ 98%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
[ 99%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:273:14:
273 | if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:278:14:
278 | if ( any( test_correlation /= reference_correlation ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:283:14:
283 | if ( any( test_std_ratio /= reference_std_ratio ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:288:14:
288 | if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:293:14:
293 | if ( any( test_bias_norm /= reference_bias_norm ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:512:14:
512 | if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:521:14:
521 | any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:520:14:
520 | any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:519:14:
519 | any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:518:14:
518 | any( reinit_correlation_1 /= reinit_correlation_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:517:14:
517 | if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:431:14:
431 | if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:371:14:
371 | any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:370:14:
370 | any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:369:14:
369 | any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:368:14:
368 | any( manual_correlation_2 /= manual_correlation_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:367:14:
367 | if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[100%] Linking Fortran executable clubb_thread_test
[100%] Linking Fortran executable clubb_driver_test
[100%] Linking Fortran executable clubb_standalone
[100%] Linking Fortran executable clubb_standalone_loss
[100%] Built target clubb_thread_test
[100%] Built target clubb_standalone
[100%] Built target clubb_driver_test
[100%] Built target clubb_standalone_loss
[100%] Linking Fortran executable clubb_loss_driver_test
[100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o
[100%] Built target clubb_loss_driver_test
[100%] Linking Fortran executable clubb_tuner
[100%] Built target clubb_tuner
Install the project...
-- Install configuration: "Release"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_tuner
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/G_unit_tests
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_thread_test
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_driver_test
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone_loss
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_loss_driver_test
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
[Pipeline] catchError
[Pipeline] {
[Pipeline] sh
+ python3 tests/run_restart_test.py rico_silhs
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_restart/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing python requirements into /home/jenkins/workspace/clubb_restart/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 12 packages in 287ms
Downloading pygments (1.2MiB)
Downloading meson (1.1MiB)
Downloading numpy (16.0MiB)
Downloading netcdf4 (10.1MiB)
Downloading cftime (1.6MiB)
Downloaded cftime
Downloaded netcdf4
Downloaded meson
Downloaded pygments
Downloaded numpy
Prepared 12 packages in 562ms
Installed 12 packages in 30ms
+ certifi==2026.10.19
+ cftime==1.6.6.1
+ iniconfig==2.3.1
+ meson==1.12.1
+ netcdf4==1.7.5
+ ninja==1.13.2
+ numpy==2.5.4
+ packaging==26.3
+ pluggy==1.7.0
+ pygments==2.21.0
+ pytest==9.1.1
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_restart/.venv-python/bin/python
Running standard rico_silhs case... Done!
Running restart rico_silhs case from halfway point... Done!
Results bit-for-bit.
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
Running on Jenkins in /home/jenkins/workspace/clubb_restart
[Pipeline] {
[Pipeline] checkout
The recommended git tool is: git
DEPRECATED: The 'Wipe out repository & force clone' extension is deprecated for Pipeline jobs. Pipeline users should use the deleteDir() step instead.
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/clubb.git
> git init /home/jenkins/workspace/clubb_restart # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
> git --version # timeout=10
> git --version # 'git version 2.43.0'
using GIT_ASKPASS to set credentials larsongroupsysadmin github token
> git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
> git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision 8369512fcc6487603491e12ac13376de2aec2a0b (refs/remotes/origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 8369512fcc6487603491e12ac13376de2aec2a0b # timeout=10
Commit message: "Clubb params 1d to 2d fix (#1392)"
[Pipeline] withEnv
[Pipeline] {
[Pipeline] catchError
[Pipeline] {
[Pipeline] sh
+ python3 tests/run_restart_test.py bomex -jax -multicol C8/0.2:0.8/4 -dt_main 60 -dt_rad 60 -tout 60 -override stats_tsamp=60.
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_restart/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing python requirements into /home/jenkins/workspace/clubb_restart/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 12 packages in 271ms
Downloading pygments (1.2MiB)
Downloading numpy (16.0MiB)
Downloading netcdf4 (10.1MiB)
Downloading meson (1.1MiB)
Downloading cftime (1.6MiB)
Downloaded cftime
Downloaded netcdf4
Downloaded meson
Downloaded pygments
Downloaded numpy
Prepared 12 packages in 764ms
Installed 12 packages in 20ms
+ certifi==2026.10.19
+ cftime==1.6.6.1
+ iniconfig==2.3.1
+ meson==1.12.1
+ netcdf4==1.7.5
+ ninja==1.13.2
+ numpy==2.5.4
+ packaging==26.3
+ pluggy==1.7.0
+ pygments==2.21.0
+ pytest==9.1.1
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_restart/.venv-python/bin/python
Running standard bomex case... Running on Jenkins in /home/jenkins/workspace/clubb_restart@2
[Pipeline] {
[Pipeline] checkout
The recommended git tool is: git
DEPRECATED: The 'Wipe out repository & force clone' extension is deprecated for Pipeline jobs. Pipeline users should use the deleteDir() step instead.
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/clubb.git
> git init /home/jenkins/workspace/clubb_restart@2 # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
> git --version # timeout=10
> git --version # 'git version 2.43.0'
using GIT_ASKPASS to set credentials larsongroupsysadmin github token
> git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
> git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision 8369512fcc6487603491e12ac13376de2aec2a0b (refs/remotes/origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 8369512fcc6487603491e12ac13376de2aec2a0b # timeout=10
Commit message: "Clubb params 1d to 2d fix (#1392)"
[Pipeline] withEnv
[Pipeline] {
[Pipeline] catchError
[Pipeline] {
[Pipeline] sh
+ python3 tests/run_restart_test.py rico_silhs -jax -max_iters 74 -dt_main 60 -dt_rad 60 -tout 60 -multicol C8/0.2:0.8/2 -override stats_tsamp=60.,lh_sequence_length=3,l_lh_importance_sampling=.false.
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_restart@2/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_restart@2/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_restart@2/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing python requirements into /home/jenkins/workspace/clubb_restart@2/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 12 packages in 275ms
Downloading pygments (1.2MiB)
Downloading cftime (1.6MiB)
Downloading numpy (16.0MiB)
Downloading meson (1.1MiB)
Downloading netcdf4 (10.1MiB)
Downloaded cftime
Downloaded netcdf4
Downloaded meson
Downloaded pygments
Downloaded numpy
Prepared 12 packages in 609ms
Installed 12 packages in 31ms
+ certifi==2026.10.19
+ cftime==1.6.6.1
+ iniconfig==2.3.1
+ meson==1.12.1
+ netcdf4==1.7.5
+ ninja==1.13.2
+ numpy==2.5.4
+ packaging==26.3
+ pluggy==1.7.0
+ pygments==2.21.0
+ pytest==9.1.1
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_restart@2/.venv-python/bin/python
Running standard rico_silhs case... Done!
Running restart bomex case from halfway point... Done!
Running restart rico_silhs case from halfway point... Done!
Results bit-for-bit.
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
Done!
Results bit-for-bit.
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // parallel
[Pipeline] }
[Pipeline] // stage
[Pipeline] End of Pipeline
Finished: SUCCESS
