+ python postprocessing/pyplotgen/pyplotgen.py -les -clubb output/solver_compare/lapack_output output/solver_compare/custom_lu_output output/solver_compare/bicgstab_output -output_dir output/a8c9529_solver
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_plots@2/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_plots@2/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_plots@2/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing plot requirements into /home/jenkins/workspace/clubb_plots@2/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 25 packages in 1.07s
Building fpdf==1.7.2
Downloading netcdf4 (9.7MiB)
Downloading pillow (6.6MiB)
Downloading pygments (1.2MiB)
Downloading numpy (16.0MiB)
Downloading opencv-python-headless (59.1MiB)
Downloading meson (1.1MiB)
Downloading fonttools (5.1MiB)
Downloading cftime (1.6MiB)
Downloading kiwisolver (1.4MiB)
Downloading pandas (10.3MiB)
Downloading matplotlib (8.4MiB)
Built fpdf==1.7.2
Downloaded kiwisolver
Downloaded cftime
Downloaded meson
Downloaded pillow
Downloaded pygments
Downloaded fonttools
Downloaded netcdf4
Downloaded matplotlib
Downloaded numpy
Downloaded opencv-python-headless
Downloaded pandas
Prepared 25 packages in 2.26s
Installed 25 packages in 34ms
+ certifi==2026.7.22
+ cftime==1.6.6
+ contourpy==1.4.0
+ cycler==0.12.1
+ fonttools==4.66.1
+ fpdf==1.7.2
+ iniconfig==2.3.1
+ kiwisolver==1.5.1
+ matplotlib==3.10.9
+ meson==1.12.1
+ netcdf4==1.7.4
+ ninja==1.13.2
+ numpy==2.5.4
+ opencv-python-headless==4.14.0.94
+ packaging==26.3
+ pandas==3.0.6
+ pillow==12.3.0
+ pluggy==1.6.0
+ pygments==2.21.0
+ pyparsing==3.3.3
+ pytest==9.1.1
+ python-dateutil==2.9.0.post0
+ seaborn==0.13.2
+ six==1.17.0
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_plots@2/.venv-python/bin/python
/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/config/VariableGroupBase.py:480: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/config/VariableGroupBase.py:496: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd_splat [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/src/interoperability.py:41: SyntaxWarning: invalid escape sequence '\$'
return re.sub("\$[^$]*\$",'',string)
/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/src/DataReader.py:590: SyntaxWarning: invalid escape sequence '\m'
units = "$\mathrm{" + raw_units + "}$" # $'s are used to format equations
*******************************************
Welcome to PyPlotGen.
*******************************************
Checking for model benchmark output...
Benchmark output found in /home/jenkins/workspace/clubb_plots@2/input/les_and_clubb_benchmark_runs/.
-------------------------------------------
Running...
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NOTE: If processing multiple cases (ARM, BOMEX, etc.) with multithreading,
the total number of panels to be processed may increase as threads complete
and begin processing new cases.
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-------------------------------------------
ARM: SUCCESS --> Images found.
ARM_97: SUCCESS --> Images found.
ATEX: SUCCESS --> Images found.
BOMEX: SUCCESS --> Images found.
CGILS_S11: SUCCESS --> Images found.
CGILS_S12: SUCCESS --> Images found.
CGILS_S6: SUCCESS --> Images found.
DYCOMS2_RF01: SUCCESS --> Images found.
DYCOMS2_RF01_FIXED_SST: SUCCESS --> Images found.
DYCOMS2_RF02_DS: SUCCESS --> Images found.
DYCOMS2_RF02_ND: SUCCESS --> Images found.
GABLS3_NIGHT: SUCCESS --> Images found.
LBA: SUCCESS --> Images found.
MPACE_B: SUCCESS --> Images found.
RICO: SUCCESS --> Images found.
TWP_ICE: SUCCESS --> Images found.
WANGARA: SUCCESS --> Images found.
-------------------------------------------
Output can be viewed at file:///home/jenkins/workspace/clubb_plots@2/output/a8c9529_solver/index.html with a web browser
Pyplotgen ran in 159 seconds.
See error.log in the output folder for detailed info including warnings.
error.log messages include:
26-10-14 05:05:59.715 proc_id: 3733250 Warning, unknown model detected. PyPlotgen doesn't know where this netcdf dependent_data is from. <class 'netCDF4.Dataset'>
[Pipeline] sh
+ ssh carson 'mkdir -p /home/pub/web_plots/clubb_solver_plots/master'
[Pipeline] sh
+ scp -r output/a8c9529_solver carson:/home/pub/web_plots/clubb_solver_plots/master
[Pipeline] sh
+ ssh carson '/home/pub/web_plots/generate_plot_directory_page.py /home/pub/web_plots/clubb_solver_plots/'
/home/pub/web_plots/clubb_solver_plots/ updated successfully.
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
COMPLETE -- atex
COMPLETE -- arm
COMPLETE -- bomex
COMPLETE -- astex_a209
COMPLETE -- cgils_s11
COMPLETE -- cgils_s6
COMPLETE -- clex9_nov02
COMPLETE -- clex9_oct14
COMPLETE -- cgils_s12
COMPLETE -- dycoms2_rf01_fixed_sst
COMPLETE -- dycoms2_rf01
COMPLETE -- dycoms2_rf02_nd
COMPLETE -- dycoms2_rf02_ds
COMPLETE -- dycoms2_rf02_do
COMPLETE -- dycoms2_rf02_so
COMPLETE -- fire
COMPLETE -- gabls3_night
COMPLETE -- jun25_altocu
COMPLETE -- gabls3
COMPLETE -- lba
COMPLETE -- gabls2
COMPLETE -- mpace_b
COMPLETE -- mpace_b_silhs
COMPLETE -- nov11_altocu
COMPLETE -- rico
COMPLETE -- rico_silhs
COMPLETE -- mpace_a
COMPLETE -- arm_97
COMPLETE -- wangara
COMPLETE -- twp_ice
COMPLETE -- mc3e
=================== Runs Complete ===================
All cases ran to completion.
+ mv output cpu_a8c9529
+ mkdir output
[Pipeline] sh
+ scp -r carson:/home/pub/web_plots/clubb_ifort_plots/master/cur_out .
ssh: Could not resolve hostname carson: Temporary failure in name resolution
scp: Connection closed
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // script
[Pipeline] }
ERROR: script returned exit code 255
Setting overall build result to FAILURE
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
COMPLETE -- bomex
COMPLETE -- atex
COMPLETE -- dycoms2_rf01
COMPLETE -- arm
COMPLETE -- clex9_oct14
COMPLETE -- dycoms2_rf01_fixed_sst
COMPLETE -- dycoms2_rf02_nd
COMPLETE -- dycoms2_rf02_do
COMPLETE -- dycoms2_rf02_so
COMPLETE -- dycoms2_rf02_ds
COMPLETE -- fire
COMPLETE -- gabls3_night
COMPLETE -- gabls2
COMPLETE -- jun25_altocu
COMPLETE -- neutral
COMPLETE -- nov11_altocu
COMPLETE -- lba
COMPLETE -- rico_silhs
COMPLETE -- rico
COMPLETE -- wangara
=================== Runs Complete ===================
All cases ran to completion.
+ python3 postprocessing/pyplotgen/pyplotgen.py -les -clubb output/jax_vs_fortran/fortran_a8c9529 output/jax_vs_fortran/jax_a8c9529 -output_dir output/a8c9529_jax_vs_fortran
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_plots/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_plots/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_plots/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing plot requirements into /home/jenkins/workspace/clubb_plots/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 25 packages in 1.01s
Building fpdf==1.7.2
Downloading pillow (6.6MiB)
Downloading opencv-python-headless (59.1MiB)
Downloading matplotlib (8.4MiB)
Downloading netcdf4 (9.7MiB)
Downloading numpy (16.0MiB)
Downloading meson (1.1MiB)
Downloading kiwisolver (1.4MiB)
Downloading fonttools (5.1MiB)
Downloading pygments (1.2MiB)
Downloading pandas (10.3MiB)
Downloading cftime (1.6MiB)
Downloaded kiwisolver
Downloaded cftime
Built fpdf==1.7.2
Downloaded meson
Downloaded pillow
Downloaded pygments
Downloaded fonttools
Downloaded netcdf4
Downloaded matplotlib
Downloaded numpy
Downloaded pandas
Downloaded opencv-python-headless
Prepared 25 packages in 1.70s
Installed 25 packages in 34ms
+ certifi==2026.7.22
+ cftime==1.6.6
+ contourpy==1.4.0
+ cycler==0.12.1
+ fonttools==4.66.1
+ fpdf==1.7.2
+ iniconfig==2.3.1
+ kiwisolver==1.5.1
+ matplotlib==3.10.9
+ meson==1.12.1
+ netcdf4==1.7.4
+ ninja==1.13.2
+ numpy==2.5.4
+ opencv-python-headless==4.14.0.94
+ packaging==26.3
+ pandas==3.0.6
+ pillow==12.3.0
+ pluggy==1.6.0
+ pygments==2.21.0
+ pyparsing==3.3.3
+ pytest==9.1.1
+ python-dateutil==2.9.0.post0
+ seaborn==0.13.2
+ six==1.17.0
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_plots/.venv-python/bin/python
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/config/VariableGroupBase.py:480: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/config/VariableGroupBase.py:496: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd_splat [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/src/interoperability.py:41: SyntaxWarning: invalid escape sequence '\$'
return re.sub("\$[^$]*\$",'',string)
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/src/DataReader.py:590: SyntaxWarning: invalid escape sequence '\m'
units = "$\mathrm{" + raw_units + "}$" # $'s are used to format equations
*******************************************
Welcome to PyPlotGen.
*******************************************
Checking for model benchmark output...
Benchmark output found in /home/jenkins/workspace/clubb_plots/input/les_and_clubb_benchmark_runs/.
-------------------------------------------
Running...
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NOTE: If processing multiple cases (ARM, BOMEX, etc.) with multithreading,
the total number of panels to be processed may increase as threads complete
and begin processing new cases.
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-------------------------------------------
ARM: SUCCESS --> Images found.
ATEX: SUCCESS --> Images found.
BOMEX: SUCCESS --> Images found.
CLEX9_OCT14: SUCCESS --> Images found.
DYCOMS2_RF01: SUCCESS --> Images found.
DYCOMS2_RF01_FIXED_SST: SUCCESS --> Images found.
DYCOMS2_RF02_DO: SUCCESS --> Images found.
DYCOMS2_RF02_DS: SUCCESS --> Images found.
DYCOMS2_RF02_ND: SUCCESS --> Images found.
DYCOMS2_RF02_SO: SUCCESS --> Images found.
FIRE: SUCCESS --> Images found.
GABLS2: SUCCESS --> Images found.
GABLS2_NIGHTLY: SUCCESS --> Images found.
GABLS3_NIGHT: SUCCESS --> Images found.
JUN25_ALTOCU: SUCCESS --> Images found.
LBA: SUCCESS --> Images found.
NEUTRAL: SUCCESS --> Images found.
NOV11_ALTOCU: SUCCESS --> Images found.
RICO: SUCCESS --> Images found.
RICO_SILHS: SUCCESS --> Images found.
WANGARA: SUCCESS --> Images found.
-------------------------------------------
Output can be viewed at file:///home/jenkins/workspace/clubb_plots/output/a8c9529_jax_vs_fortran/index.html with a web browser
Pyplotgen ran in 74 seconds.
See error.log in the output folder for detailed info including warnings.
error.log messages include:
26-10-14 05:24:17.989 proc_id: 3735468 Warning, unknown model detected. PyPlotgen doesn't know where this netcdf dependent_data is from. <class 'netCDF4.Dataset'>
[Pipeline] sh
+ ssh carson 'mkdir -p /home/pub/web_plots/clubb_jax_plots/master'
[Pipeline] sh
+ scp -r output/a8c9529_jax_vs_fortran carson:/home/pub/web_plots/clubb_jax_plots/master
[Pipeline] sh
+ ssh carson '/home/pub/web_plots/generate_plot_directory_page.py /home/pub/web_plots/clubb_jax_plots/'
/home/pub/web_plots/clubb_jax_plots/ updated successfully.
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
COMPLETE -- arm
COMPLETE -- atex
COMPLETE -- bomex
COMPLETE -- dycoms2_rf01
COMPLETE -- dycoms2_rf01_fixed_sst
COMPLETE -- dycoms2_rf02_ds
COMPLETE -- dycoms2_rf02_nd
COMPLETE -- mpace_b
COMPLETE -- rico
COMPLETE -- wangara
COMPLETE -- arm_97
COMPLETE -- cgils_s6
COMPLETE -- cgils_s11
COMPLETE -- cgils_s12
COMPLETE -- gabls3_night
COMPLETE -- lba
COMPLETE -- twp_ice
=================== Runs Complete ===================
All cases ran to completion.
+ mv output gpu_a8c9529
+ mkdir output
[Pipeline] }
Lock released on resource [Resource: GPU_mitch]
[Pipeline] // lock
[Pipeline] sh
+ scp -r carson:/home/pub/web_plots/clubb_nvhpc_gpu_plots/master/cur_out .
ssh: Could not resolve hostname carson: Temporary failure in name resolution
scp: Connection closed
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // script
[Pipeline] }
ERROR: script returned exit code 255
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // parallel
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] emailext
Sending email to: messnermet@uwm.edu
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] End of Pipeline
Finished: FAILURE
