-------------------------------------------
ARM: SUCCESS --> Images found.
ARM_97: SUCCESS --> Images found.
ASTEX_A209: SUCCESS --> Images found.
ATEX: SUCCESS --> Images found.
BOMEX: SUCCESS --> Images found.
CGILS_S11: SUCCESS --> Images found.
CGILS_S12: SUCCESS --> Images found.
CGILS_S6: SUCCESS --> Images found.
CLEX9_NOV02: SUCCESS --> Images found.
CLEX9_OCT14: SUCCESS --> Images found.
DYCOMS2_RF01: SUCCESS --> Images found.
DYCOMS2_RF01_FIXED_SST: SUCCESS --> Images found.
DYCOMS2_RF02_DO: SUCCESS --> Images found.
DYCOMS2_RF02_DS: SUCCESS --> Images found.
DYCOMS2_RF02_ND: SUCCESS --> Images found.
DYCOMS2_RF02_SO: SUCCESS --> Images found.
FIRE: SUCCESS --> Images found.
GABLS2: SUCCESS --> Images found.
GABLS2_NIGHTLY: SUCCESS --> Images found.
GABLS3: SUCCESS --> Images found.
GABLS3_NIGHT: SUCCESS --> Images found.
JUN25_ALTOCU: SUCCESS --> Images found.
LBA: SUCCESS --> Images found.
MC3E: SUCCESS --> Images found.
MPACE_A: SUCCESS --> Images found.
MPACE_B: SUCCESS --> Images found.
MPACE_B_SILHS: SUCCESS --> Images found.
NOV11_ALTOCU: SUCCESS --> Images found.
RICO: SUCCESS --> Images found.
RICO_SILHS: SUCCESS --> Images found.
TWP_ICE: SUCCESS --> Images found.
WANGARA: SUCCESS --> Images found.
-------------------------------------------
Output can be viewed at file:///home/jenkins/workspace/clubb_plots/8369512_vs_master_ec5e807/index.html with a web browser
Pyplotgen ran in 121 seconds.
See error.log in the output folder for detailed info including warnings.
error.log messages include:
26-10-20 05:06:24.186 proc_id: 1657736 Warning, unknown model detected. PyPlotgen doesn't know where this netcdf dependent_data is from. <class 'netCDF4.Dataset'>
[Pipeline] sh
+ ssh carson 'mkdir -p /home/pub/web_plots/clubb_ifort_plots/master'
[Pipeline] sh
+ scp -r 8369512_vs_master_ec5e807 carson:/home/pub/web_plots/clubb_ifort_plots/master
[Pipeline] sh
+ ssh carson '/home/pub/web_plots/generate_plot_directory_page.py /home/pub/web_plots/clubb_ifort_plots/'
/home/pub/web_plots/clubb_ifort_plots/ updated successfully.
[Pipeline] sh
+ rm -rf cur_out
[Pipeline] sh
+ mkdir cur_out
[Pipeline] sh
+ mv cpu_8369512 cur_out
[Pipeline] sh
+ echo 8369512
[Pipeline] sh
+ ssh carson 'rm -rf /home/pub/web_plots/clubb_ifort_plots/master/cur_out'
[Pipeline] sh
+ scp -r cur_out carson:/home/pub/web_plots/clubb_ifort_plots/master/
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
COMPLETE -- arm
COMPLETE -- atex
COMPLETE -- bomex
COMPLETE -- dycoms2_rf01
COMPLETE -- dycoms2_rf01_fixed_sst
COMPLETE -- dycoms2_rf02_ds
COMPLETE -- dycoms2_rf02_nd
COMPLETE -- mpace_b
COMPLETE -- rico
COMPLETE -- wangara
COMPLETE -- arm_97
COMPLETE -- cgils_s6
COMPLETE -- cgils_s11
COMPLETE -- cgils_s12
COMPLETE -- gabls3_night
COMPLETE -- lba
COMPLETE -- twp_ice
=================== Runs Complete ===================
All cases ran to completion.
+ mv output gpu_8369512
+ mkdir output
[Pipeline] }
Lock released on resource [Resource: GPU_built-in], resources: [GPU_built-in]
[Pipeline] // lock
[Pipeline] sh
+ scp -r carson:/home/pub/web_plots/clubb_nvhpc_gpu_plots/master/cur_out .
[Pipeline] sh
++ cat cur_out/commit
+ python postprocessing/pyplotgen/pyplotgen.py -les -clubb cpu_8369512 cur_out/cpu_ec5e807 gpu_8369512 cur_out/gpu_ec5e807 -output_dir 8369512_vs_master_ec5e807
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_plots@2/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_plots@2/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_plots@2/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing plot requirements into /home/jenkins/workspace/clubb_plots@2/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 25 packages in 1.24s
Building fpdf==1.7.2
Downloading pillow (6.6MiB)
Downloading matplotlib (8.4MiB)
Downloading netcdf4 (10.1MiB)
Downloading kiwisolver (1.4MiB)
Downloading pygments (1.2MiB)
Downloading meson (1.1MiB)
Downloading pandas (10.3MiB)
Downloading opencv-python-headless (59.1MiB)
Downloading numpy (16.0MiB)
Downloading fonttools (5.2MiB)
Downloading cftime (1.6MiB)
Built fpdf==1.7.2
Downloaded kiwisolver
Downloaded cftime
Downloaded meson
Downloaded pillow
Downloaded pygments
Downloaded fonttools
Downloaded netcdf4
Downloaded matplotlib
Downloaded numpy
Downloaded opencv-python-headless
Downloaded pandas
Prepared 25 packages in 2.56s
Installed 25 packages in 39ms
+ certifi==2026.10.19
+ cftime==1.6.6.1
+ contourpy==1.4.0
+ cycler==0.12.1
+ fonttools==4.67.0
+ fpdf==1.7.2
+ iniconfig==2.3.1
+ kiwisolver==1.5.1
+ matplotlib==3.10.9
+ meson==1.12.1
+ netcdf4==1.7.5
+ ninja==1.13.2
+ numpy==2.5.4
+ opencv-python-headless==4.14.0.94
+ packaging==26.3
+ pandas==3.0.6
+ pillow==12.3.0
+ pluggy==1.7.0
+ pygments==2.21.0
+ pyparsing==3.3.3
+ pytest==9.1.1
+ python-dateutil==2.9.0.post0
+ seaborn==0.13.2
+ six==1.17.0
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_plots@2/.venv-python/bin/python
/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/config/VariableGroupBase.py:480: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/config/VariableGroupBase.py:496: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd_splat [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/src/interoperability.py:41: SyntaxWarning: invalid escape sequence '\$'
return re.sub("\$[^$]*\$",'',string)
/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/src/DataReader.py:590: SyntaxWarning: invalid escape sequence '\m'
units = "$\mathrm{" + raw_units + "}$" # $'s are used to format equations
*******************************************
Welcome to PyPlotGen.
*******************************************
Checking for model benchmark output...
Benchmark output found in /home/jenkins/workspace/clubb_plots@2/input/les_and_clubb_benchmark_runs/.
-------------------------------------------
Running...
----------
NOTE: If processing multiple cases (ARM, BOMEX, etc.) with multithreading,
the total number of panels to be processed may increase as threads complete
and begin processing new cases.
----------
Progress: 0 of ? total .png panels complete
Progress: 2 of 83 total .png panels complete
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Progress: 23 of 83 total .png panels complete
Progress: 25 of 83 total .png panels complete
-------------------------------------------
ARM: SUCCESS --> Images found.
ARM_97: SUCCESS --> Images found.
ATEX: SUCCESS --> Images found.
BOMEX: SUCCESS --> Images found.
CGILS_S11: SUCCESS --> Images found.
CGILS_S12: SUCCESS --> Images found.
CGILS_S6: SUCCESS --> Images found.
DYCOMS2_RF01: SUCCESS --> Images found.
DYCOMS2_RF01_FIXED_SST: SUCCESS --> Images found.
DYCOMS2_RF02_DS: SUCCESS --> Images found.
DYCOMS2_RF02_ND: SUCCESS --> Images found.
GABLS3_NIGHT: SUCCESS --> Images found.
LBA: SUCCESS --> Images found.
MPACE_B: SUCCESS --> Images found.
RICO: SUCCESS --> Images found.
TWP_ICE: SUCCESS --> Images found.
WANGARA: SUCCESS --> Images found.
-------------------------------------------
Output can be viewed at file:///home/jenkins/workspace/clubb_plots@2/8369512_vs_master_ec5e807/index.html with a web browser
Pyplotgen ran in 122 seconds.
See error.log in the output folder for detailed info including warnings.
error.log messages include:
26-10-20 05:18:38.033 proc_id: 767831 Warning, unknown model detected. PyPlotgen doesn't know where this netcdf dependent_data is from. <class 'netCDF4.Dataset'>
[Pipeline] sh
+ ssh carson 'mkdir -p /home/pub/web_plots/clubb_nvhpc_gpu_plots/master'
[Pipeline] sh
+ scp -r 8369512_vs_master_ec5e807 carson:/home/pub/web_plots/clubb_nvhpc_gpu_plots/master
[Pipeline] sh
+ ssh carson '/home/pub/web_plots/generate_plot_directory_page.py /home/pub/web_plots/clubb_nvhpc_gpu_plots/'
/home/pub/web_plots/clubb_nvhpc_gpu_plots/ updated successfully.
[Pipeline] sh
+ rm -rf cur_out
[Pipeline] sh
+ mkdir cur_out
[Pipeline] sh
+ mv cpu_8369512 gpu_8369512 cur_out
[Pipeline] sh
+ echo 8369512
[Pipeline] sh
+ ssh carson 'rm -rf /home/pub/web_plots/clubb_nvhpc_gpu_plots/master/cur_out'
[Pipeline] sh
+ scp -r cur_out carson:/home/pub/web_plots/clubb_nvhpc_gpu_plots/master/
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
COMPLETE -- bomex
COMPLETE -- atex
COMPLETE -- dycoms2_rf01
COMPLETE -- arm
COMPLETE -- clex9_oct14
COMPLETE -- dycoms2_rf01_fixed_sst
COMPLETE -- dycoms2_rf02_nd
COMPLETE -- dycoms2_rf02_do
COMPLETE -- dycoms2_rf02_so
COMPLETE -- dycoms2_rf02_ds
COMPLETE -- fire
COMPLETE -- gabls3_night
COMPLETE -- neutral
COMPLETE -- jun25_altocu
COMPLETE -- gabls2
COMPLETE -- lba
COMPLETE -- nov11_altocu
COMPLETE -- wangara
COMPLETE -- rico_silhs
COMPLETE -- rico
=================== Runs Complete ===================
All cases ran to completion.
+ python3 postprocessing/pyplotgen/pyplotgen.py -les -clubb output/jax_vs_fortran/fortran_8369512 output/jax_vs_fortran/jax_8369512 -output_dir output/8369512_jax_vs_fortran
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_plots/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_plots/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_plots/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing plot requirements into /home/jenkins/workspace/clubb_plots/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 25 packages in 1.31s
Building fpdf==1.7.2
Downloading pygments (1.2MiB)
Downloading pandas (10.3MiB)
Downloading meson (1.1MiB)
Downloading numpy (16.0MiB)
Downloading pillow (6.6MiB)
Downloading matplotlib (8.4MiB)
Downloading netcdf4 (10.1MiB)
Downloading opencv-python-headless (59.1MiB)
Downloading kiwisolver (1.4MiB)
Downloading fonttools (5.2MiB)
Downloading cftime (1.6MiB)
Built fpdf==1.7.2
Downloaded kiwisolver
Downloaded cftime
Downloaded meson
Downloaded pygments
Downloaded pillow
Downloaded fonttools
Downloaded netcdf4
Downloaded matplotlib
Downloaded numpy
Downloaded opencv-python-headless
Downloaded pandas
Prepared 25 packages in 2.23s
Installed 25 packages in 31ms
+ certifi==2026.10.19
+ cftime==1.6.6.1
+ contourpy==1.4.0
+ cycler==0.12.1
+ fonttools==4.67.0
+ fpdf==1.7.2
+ iniconfig==2.3.1
+ kiwisolver==1.5.1
+ matplotlib==3.10.9
+ meson==1.12.1
+ netcdf4==1.7.5
+ ninja==1.13.2
+ numpy==2.5.4
+ opencv-python-headless==4.14.0.94
+ packaging==26.3
+ pandas==3.0.6
+ pillow==12.3.0
+ pluggy==1.7.0
+ pygments==2.21.0
+ pyparsing==3.3.3
+ pytest==9.1.1
+ python-dateutil==2.9.0.post0
+ seaborn==0.13.2
+ six==1.17.0
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_plots/.venv-python/bin/python
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/config/VariableGroupBase.py:480: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/config/VariableGroupBase.py:496: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd_splat [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/src/interoperability.py:41: SyntaxWarning: invalid escape sequence '\$'
return re.sub("\$[^$]*\$",'',string)
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/src/DataReader.py:590: SyntaxWarning: invalid escape sequence '\m'
units = "$\mathrm{" + raw_units + "}$" # $'s are used to format equations
*******************************************
Welcome to PyPlotGen.
*******************************************
Checking for model benchmark output...
Benchmark output found in /home/jenkins/workspace/clubb_plots/input/les_and_clubb_benchmark_runs/.
-------------------------------------------
Running...
----------
NOTE: If processing multiple cases (ARM, BOMEX, etc.) with multithreading,
the total number of panels to be processed may increase as threads complete
and begin processing new cases.
----------
Progress: 0 of ? total .png panels complete
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-------------------------------------------
ARM: SUCCESS --> Images found.
ATEX: SUCCESS --> Images found.
BOMEX: SUCCESS --> Images found.
CLEX9_OCT14: SUCCESS --> Images found.
DYCOMS2_RF01: SUCCESS --> Images found.
DYCOMS2_RF01_FIXED_SST: SUCCESS --> Images found.
DYCOMS2_RF02_DO: SUCCESS --> Images found.
DYCOMS2_RF02_DS: SUCCESS --> Images found.
DYCOMS2_RF02_ND: SUCCESS --> Images found.
DYCOMS2_RF02_SO: SUCCESS --> Images found.
FIRE: SUCCESS --> Images found.
GABLS2: SUCCESS --> Images found.
GABLS2_NIGHTLY: SUCCESS --> Images found.
GABLS3_NIGHT: SUCCESS --> Images found.
JUN25_ALTOCU: SUCCESS --> Images found.
LBA: SUCCESS --> Images found.
NEUTRAL: SUCCESS --> Images found.
NOV11_ALTOCU: SUCCESS --> Images found.
RICO: SUCCESS --> Images found.
RICO_SILHS: SUCCESS --> Images found.
WANGARA: SUCCESS --> Images found.
-------------------------------------------
Output can be viewed at file:///home/jenkins/workspace/clubb_plots/output/8369512_jax_vs_fortran/index.html with a web browser
Pyplotgen ran in 34 seconds.
See error.log in the output folder for detailed info including warnings.
error.log messages include:
26-10-20 05:30:54.942 proc_id: 815512 Warning, unknown model detected. PyPlotgen doesn't know where this netcdf dependent_data is from. <class 'netCDF4.Dataset'>
[Pipeline] sh
+ ssh carson 'mkdir -p /home/pub/web_plots/clubb_jax_plots/master'
[Pipeline] sh
+ scp -r output/8369512_jax_vs_fortran carson:/home/pub/web_plots/clubb_jax_plots/master
[Pipeline] sh
+ ssh carson '/home/pub/web_plots/generate_plot_directory_page.py /home/pub/web_plots/clubb_jax_plots/'
/home/pub/web_plots/clubb_jax_plots/ updated successfully.
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // parallel
[Pipeline] }
[Pipeline] // stage
[Pipeline] End of Pipeline
Finished: SUCCESS
