Started by user Gunther Huebler Checking out git https://github.com/larson-group/clubb.git into /home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 to read jenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfile The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_new_stats^{commit} # timeout=10 Checking out Revision 8cf7a0b6d54dba457dc99ee7c8c5d9e734041a9e (refs/remotes/origin/clubb_new_stats) > git config core.sparsecheckout # timeout=10 > git checkout -f 8cf7a0b6d54dba457dc99ee7c8c5d9e734041a9e # timeout=10 Commit message: "Jenkins script updateS" > git rev-list --no-walk 8a8e9f0084d5dcdfb741d38e0a04a340dc0993a8 # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on nelson in /home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 8cf7a0b6d54dba457dc99ee7c8c5d9e734041a9e (refs/remotes/origin/clubb_new_stats) Commit message: "Jenkins script updateS" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Modify Config Flags) > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_new_stats^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 8cf7a0b6d54dba457dc99ee7c8c5d9e734041a9e # timeout=10 [Pipeline] sh + sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in [Pipeline] sh + sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in [Pipeline] sh + sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile CPU) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -- Configuring for CPU build -- Configuring for CPU build -- The Fortran compiler identification is NVHPC 24.3.0 -- The C compiler identification is NVHPC 24.3.0 -- The CXX compiler identification is NVHPC 24.3.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvc++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Found PkgConfig: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/pkgconf-2.2.0-m7jt4djj7ycrz7g6yadslcm2qmulsagd/bin/pkg-config (found version "2.2.0") -- Checking for module 'netcdf-fortran' -- Found netcdf-fortran, version 4.5.3 -- netcdf-fortran found via pkg-config -- Include dirs: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-4jp2ujpzfvvhktuooajkk32l4eysemmt/include;/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-c-4.9.2-h5nkcq5se7hegwgljhzllq7o3istmhyp/include -- Libraries: netcdff -- Derived NetCDFFortran_ROOT = /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-4jp2ujpzfvvhktuooajkk32l4eysemmt -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch/build/nvfortran_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch/build/nvfortran_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch/install/nvfortran_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch/cmake/toolchains/linux_x86_64_nvfortran.cmake about to cmnake /home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch/build/nvfortran_PRECdouble Running CMake configure... 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src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o [ 96%] Linking Fortran static library libmicrophys_lib.a [ 96%] Built target microphys_lib Scanning dependencies of target clubb_driver_lib [ 96%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/soil_vegetation.F90.o [ 96%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o [ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o [ 97%] Linking Fortran static library libclubb_driver_lib.a [ 97%] Built target clubb_driver_lib Scanning dependencies of target clubb_tuner Scanning dependencies of target clubb_driver_test [ 98%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o Scanning dependencies of target clubb_thread_test Scanning dependencies of target clubb_standalone [ 98%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o NVFORTRAN-F-0004-Unable to open MODULE file netcdf.mod (/home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch/src/clubb_driver_test.F90: 31) NVFORTRAN/x86-64 Linux 24.3-0: compilation aborted gmake[2]: *** [src/CMakeFiles/clubb_driver_test.dir/build.make:75: src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o] Error 2 gmake[1]: *** [CMakeFiles/Makefile2:1423: src/CMakeFiles/clubb_driver_test.dir/all] Error 2 gmake[1]: *** Waiting for unfinished jobs.... NVFORTRAN-F-0004-Unable to open MODULE file netcdf.mod (/home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch/src/clubb_standalone.F90: 26) NVFORTRAN/x86-64 Linux 24.3-0: compilation aborted gmake[2]: *** [src/CMakeFiles/clubb_standalone.dir/build.make:75: src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o] Error 2 gmake[1]: *** [CMakeFiles/Makefile2:1266: src/CMakeFiles/clubb_standalone.dir/all] Error 2 NVFORTRAN-F-0004-Unable to open MODULE file netcdf.mod (/home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch/src/clubb_thread_test.F90: 29) NVFORTRAN/x86-64 Linux 24.3-0: compilation aborted gmake[2]: *** [src/CMakeFiles/clubb_thread_test.dir/build.make:75: src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o] Error 2 gmake[1]: *** [CMakeFiles/Makefile2:1306: src/CMakeFiles/clubb_thread_test.dir/all] Error 2 NVFORTRAN-F-0004-Unable to open MODULE file netcdf.mod (/home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch/src/error.F90: 693) NVFORTRAN/x86-64 Linux 24.3-0: compilation aborted gmake[2]: *** [src/CMakeFiles/clubb_tuner.dir/build.make:88: src/CMakeFiles/clubb_tuner.dir/error.F90.o] Error 2 gmake[1]: *** [CMakeFiles/Makefile2:1347: src/CMakeFiles/clubb_tuner.dir/all] Error 2 gmake: *** [Makefile:146: all] Error 2 [91mBuild failed. See /home/jenkins/workspace/clubb_plot_nvhpc_gpu_vs_cpu_branch/build/nvfortran_PRECdouble/cmake_build_output.txt for details.[0m [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run CPU) Stage "Run CPU" skipped due to earlier failure(s) [Pipeline] getContext [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile GPU_ACC) Stage "Compile GPU_ACC" skipped due to earlier failure(s) [Pipeline] getContext [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run GPU_ACC) Stage "Run GPU_ACC" skipped due to earlier failure(s) [Pipeline] getContext [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Plot) Stage "Plot" skipped due to earlier failure(s) [Pipeline] getContext [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Update Master Output) Stage "Update Master Output" skipped due to earlier failure(s) [Pipeline] getContext [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE