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Obtained jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile from git https://github.com/larson-group/clubb.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/clubb.git
 > git init /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision 40d301330e9263c649c014bcae7e371829f42ac8 (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 40d301330e9263c649c014bcae7e371829f42ac8 # timeout=10
Commit message: "Testing the new module system with our GPU diffness test. See https://github.com/larson-group/sys_admin/issues/829"
 > git rev-list --no-walk c26a54de4f25c01f48a95e30d806400e7772c2bc # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Modify Config Flags/Load Modules)
[Pipeline] sh
+ sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in
[Pipeline] sh
+ sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in
[Pipeline] sh
+ sed -i 's:num_standalone_columns.*:num_standalone_columns = 32:g' input/tunable_parameters/configurable_model_flags.in
[Pipeline] sh
+ sed -i 's:time_final.*:time_final = 87600:g' input/case_setups/mpace_b_model.in
[Pipeline] sh
+ sed -i 's:time_final.*:time_final = 76200:g' input/case_setups/cobra_model.in
[Pipeline] sh
+ module load nvhpc netcdf-fortran
/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness@tmp/durable-83544823/script.sh.copy: line 1: module: command not found
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compile CPU)
Stage "Compile CPU" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run CPU)
Stage "Run CPU" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compile GPU_ACC)
Stage "Compile GPU_ACC" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run GPU_ACC)
Stage "Run GPU_ACC" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compile GPU_OMP)
Stage "Compile GPU_OMP" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run GPU_OMP)
Stage "Run GPU_OMP" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compare CPU vs ACC)
Stage "Compare CPU vs ACC" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compare CPU vs OMP)
Stage "Compare CPU vs OMP" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] emailext
Sending email to: messnermet@uwm.edu
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 127
Finished: FAILURE