Started by an SCM change Obtained jenkins_tests/clubb_dash/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on overlie in /home/jenkins/workspace/clubb_dash [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_dash # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision ec5e8070d3173282a6317b067f8673a657a1eb6f (refs/remotes/origin/master) Commit message: "Add JAX timing and profiling (#1393)" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f ec5e8070d3173282a6317b067f8673a657a1eb6f # timeout=10 > git rev-list --no-walk 6e48f97c2a96bc78fb498c82f1ed0bb690235349 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Run Dash pytests) [Pipeline] withEnv [Pipeline] { [Pipeline] sh + export PATH=/home/jenkins/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin + PATH=/home/jenkins/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin + node --version v22.23.3 + bash tests/run_pytests.sh -dash --junitxml=/home/jenkins/workspace/clubb_dash/output/tests/pytests/dash.xml --durations=10 Installing uv 0.11.32 in /home/jenkins/workspace/clubb_dash/.clubb-python-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_dash/.clubb-python-tools/bin uv uvx everything's installed! Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_dash/.venv-python Using CPython 3.12.3 interpreter at: /usr/bin/python3.12 Creating virtual environment at: .venv-python Activate with: source .venv-python/bin/activate Installing dash requirements into /home/jenkins/workspace/clubb_dash/.venv-python Using Python 3.12.3 environment at: .venv-python Resolved 71 packages in 762ms Downloading pydantic-core (2.1MiB) Downloading meson (1.1MiB) Downloading pygments (1.2MiB) Downloading cryptography (4.5MiB) Downloading fonttools (5.2MiB) Downloading cftime (1.6MiB) Downloading scipy (33.7MiB) Downloading plotly (9.5MiB) Downloading numpy (16.0MiB) Downloading kiwisolver (1.4MiB) Downloading dash (7.6MiB) Downloading pillow (6.6MiB) Downloading netcdf4 (10.1MiB) Downloading matplotlib (8.4MiB) Downloaded kiwisolver Downloaded cftime Downloaded pydantic-core Downloaded meson Downloaded pygments Downloaded cryptography Downloaded fonttools Downloaded pillow Downloaded dash Downloaded netcdf4 Downloaded matplotlib Downloaded numpy Downloaded plotly Downloaded scipy Prepared 71 packages in 1.71s Installed 71 packages in 47ms + annotated-types==0.8.0 + anyio==4.15.1 + attrs==26.1.0 + blinker==1.9.0 + certifi==2026.10.18 + cffi==2.1.1 + cftime==1.6.6.1 + charset-normalizer==3.5.2 + click==8.5.0 + contourpy==1.4.0 + cryptography==50.0.2 + cycler==0.12.1 + dash==3.4.0 + dill==0.4.1 + diskcache==5.6.3 + flask==3.1.3 + fonttools==4.67.0 + h11==0.16.0 + httpcore==1.0.9 + httpx==0.28.1 + httpx-sse==0.4.3 + idna==3.20 + importlib-metadata==9.0.1 + iniconfig==2.3.1 + itsdangerous==2.2.0 + jinja2==3.1.6 + jsonschema==4.26.0 + jsonschema-specifications==2025.9.1 + kiwisolver==1.5.1 + markupsafe==3.0.4 + matplotlib==3.10.9 + mcp==1.30.0 + meson==1.12.1 + multiprocess==0.70.19 + narwhals==2.27.1 + nest-asyncio==1.6.0 + netcdf4==1.7.5 + ninja==1.13.2 + numpy==2.5.4 + packaging==26.3 + pillow==12.3.0 + plotly==6.9.0 + pluggy==1.7.0 + psutil==7.2.2 + pycparser==3.11 + pydantic==2.14.1 + pydantic-core==2.50.1 + pydantic-settings==2.16.0 + pygments==2.21.0 + pyjwt==2.15.1 + pyparsing==3.3.3 + pytest==9.1.1 + python-dateutil==2.9.0.post0 + python-dotenv==1.2.4 + python-multipart==0.0.32 + referencing==0.37.0 + requests==2.34.2 + retrying==1.4.2 + rpds-py==2026.9.1 + scipy==1.18.1 + setuptools==84.0.0 + six==1.17.0 + sse-starlette==3.5.0 + starlette==1.9.0 + tabulate==0.10.0 + typing-extensions==4.16.0 + typing-inspection==0.4.4 + urllib3==2.8.0 + uvicorn==0.54.0 + werkzeug==3.1.9 + zipp==4.1.1 Ready: /home/jenkins/workspace/clubb_dash/.venv-python/bin/python ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-9.1.1, pluggy-1.7.0 rootdir: /home/jenkins/workspace/clubb_dash plugins: dash-3.4.0, anyio-4.15.1 collected 552 items dash_app/pytests/test_activity.py ......... [ 1%] dash_app/pytests/test_agent_integration.py .............. [ 4%] dash_app/pytests/test_agent_plot_actions.py ........ [ 5%] dash_app/pytests/test_agent_services.py ................................ [ 11%] ................. [ 14%] dash_app/pytests/test_agent_tab_registry.py ...... [ 15%] dash_app/pytests/test_agent_tuning.py ............ [ 17%] dash_app/pytests/test_analysis.py ..... [ 18%] dash_app/pytests/test_app_startup.py .......... [ 20%] dash_app/pytests/test_atlas.py . [ 20%] dash_app/pytests/test_bivariate_heatmap.py .. [ 21%] dash_app/pytests/test_callbacks_runs.py ............ [ 23%] dash_app/pytests/test_compile_tab_build_status.py ................. [ 26%] dash_app/pytests/test_custom_plot.py ........ [ 27%] dash_app/pytests/test_dashboard_activity_labels.py . [ 27%] dash_app/pytests/test_dashboard_lifecycle.py ... [ 28%] dash_app/pytests/test_dashboard_manager.py ...... [ 29%] dash_app/pytests/test_equations.py ... [ 30%] dash_app/pytests/test_fill_holes_viewer.py .... [ 30%] dash_app/pytests/test_jax_device.py ..................... [ 34%] dash_app/pytests/test_mcp_endpoint.py ... [ 35%] dash_app/pytests/test_misc_tab.py ... [ 35%] dash_app/pytests/test_netcdf.py ...... [ 36%] dash_app/pytests/test_output_directory_picker.py ...... [ 37%] dash_app/pytests/test_output_discovery.py ....... [ 39%] dash_app/pytests/test_pane_resize.py ... [ 39%] dash_app/pytests/test_param_disclosures.py ........ [ 41%] dash_app/pytests/test_pdf_contour_plot.py ...................... [ 45%] dash_app/pytests/test_performance_polling.py ....... [ 46%] dash_app/pytests/test_persistence.py .... [ 47%] dash_app/pytests/test_plot_case_cache.py .......... [ 48%] dash_app/pytests/test_plot_extraction.py ............................... [ 54%] [ 54%] dash_app/pytests/test_plot_grid_updates.py ..... [ 55%] dash_app/pytests/test_plot_help.py ... [ 55%] dash_app/pytests/test_plot_tasks.py .......... [ 57%] dash_app/pytests/test_plot_transitions.py ............. [ 60%] dash_app/pytests/test_profile_tab.py .............................. [ 65%] dash_app/pytests/test_profiles.py ...... [ 66%] dash_app/pytests/test_pyplotgen_export.py ...... [ 67%] dash_app/pytests/test_pyplotgen_output_handler.py . [ 67%] dash_app/pytests/test_reports_tab.py ....... [ 69%] dash_app/pytests/test_run_broker_simplification.py ..................... [ 73%] [ 73%] dash_app/pytests/test_run_callbacks_settings.py .............. [ 75%] dash_app/pytests/test_run_runtime.py .......... [ 77%] dash_app/pytests/test_runtime.py .. [ 77%] dash_app/pytests/test_runtime_logging.py ..... [ 78%] dash_app/pytests/test_runtime_loss_batches.py . [ 78%] dash_app/pytests/test_sam_3d_reference.py . [ 78%] dash_app/pytests/test_scm_override.py ...... [ 80%] dash_app/pytests/test_selected_build.py ..................... [ 83%] dash_app/pytests/test_state_persistence.py ............. [ 86%] dash_app/pytests/test_stats_selection.py ............................... [ 91%] [ 91%] dash_app/pytests/test_taylor_window_display.py ..... [ 92%] dash_app/pytests/test_tunable_config_save.py ............... [ 95%] dash_app/pytests/test_tune_callbacks_settings.py ............. [ 97%] dash_app/pytests/test_tutorial_tab.py .. [ 98%] dash_app/pytests/test_two_gaussian_model.py ...... [ 99%] dash_app/pytests/test_workspace_selection.py .... [100%] =============================== warnings summary =============================== dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:35: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead legacy_str = getattr(ast, "Str", None) dash_app/pytests/test_plot_case_cache.py: 4120 warnings /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:36: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead if legacy_str is not None and isinstance(node, legacy_str): dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:39: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead legacy_num = getattr(ast, "Num", None) dash_app/pytests/test_plot_case_cache.py: 4120 warnings /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:40: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead if legacy_num is not None and isinstance(node, legacy_num): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - generated xml file: /home/jenkins/workspace/clubb_dash/output/tests/pytests/dash.xml - ============================= slowest 10 durations ============================= 1.53s call dash_app/pytests/test_plot_tasks.py::test_browser_updates_selection_immediately_and_ignores_stale_results 1.20s call dash_app/pytests/test_agent_services.py::test_mcp_stdio_discovery_and_structured_error_round_trip 0.98s call dash_app/pytests/test_agent_plot_actions.py::test_profile_png_renderer_writes_a_real_png 0.82s call dash_app/pytests/test_plot_case_cache.py::test_background_worker_snapshot_resolves_in_main_process 0.72s call dash_app/pytests/test_plot_tasks.py::test_real_worker_inspects_missing_directory_and_serializes_no_update 0.66s call dash_app/pytests/test_agent_services.py::test_mcp_exposes_closed_world_typed_tools_and_annotations 0.43s call dash_app/pytests/test_pdf_contour_plot.py::test_pdf_compare_mode_builds_shared_axis_directory_panels 0.41s call dash_app/pytests/test_netcdf.py::test_shared_netcdf_consumers_import_as_dashboard_packages 0.39s call dash_app/pytests/test_run_broker_simplification.py::test_default_new_scenario_keeps_four_reservations_and_restarts_finished_case 0.35s call dash_app/pytests/test_fill_holes_viewer.py::test_profile_field_scale_defaults_to_log_and_can_be_linear ===================== 552 passed, 8242 warnings in 23.88s ====================== [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] junit Recording test results [Checks API] No suitable checks publisher found. [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS