Started by an SCM change Obtained jenkins_tests/clubb_dash/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on overlie in /home/jenkins/workspace/clubb_dash [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_dash # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 09499c45d0ef25810f48bbd43c8f92afa1497caa (refs/remotes/origin/master) > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 09499c45d0ef25810f48bbd43c8f92afa1497caa # timeout=10 Commit message: "Consolidate CLUBB workflows into skills (#1394)" > git rev-list --no-walk a8c952996409f8c94d6a28714171145ed7d2c2ae # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Run Dash pytests) [Pipeline] withEnv [Pipeline] { [Pipeline] sh + export PATH=/home/jenkins/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin + PATH=/home/jenkins/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin + node --version v22.23.3 + bash tests/run_pytests.sh -dash --junitxml=/home/jenkins/workspace/clubb_dash/output/tests/pytests/dash.xml --durations=10 Installing uv 0.11.32 in /home/jenkins/workspace/clubb_dash/.clubb-python-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_dash/.clubb-python-tools/bin uv uvx everything's installed! Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_dash/.venv-python Using CPython 3.12.3 interpreter at: /usr/bin/python3.12 Creating virtual environment at: .venv-python Activate with: source .venv-python/bin/activate Installing dash requirements into /home/jenkins/workspace/clubb_dash/.venv-python Using Python 3.12.3 environment at: .venv-python Resolved 71 packages in 849ms Downloading pillow (6.6MiB) Downloading pydantic-core (2.1MiB) Downloading plotly (9.5MiB) Downloading pygments (1.2MiB) Downloading netcdf4 (10.1MiB) Downloading cryptography (4.5MiB) Downloading scipy (33.7MiB) Downloading numpy (16.0MiB) Downloading kiwisolver (1.4MiB) Downloading fonttools (5.2MiB) Downloading meson (1.1MiB) Downloading cftime (1.6MiB) Downloading dash (7.6MiB) Downloading matplotlib (8.4MiB) Downloaded cftime Downloaded kiwisolver Downloaded pydantic-core Downloaded meson Downloaded pygments Downloaded cryptography Downloaded fonttools Downloaded pillow Downloaded dash Downloaded netcdf4 Downloaded matplotlib Downloaded numpy Downloaded plotly Downloaded scipy Prepared 71 packages in 2.15s Installed 71 packages in 48ms + annotated-types==0.8.0 + anyio==4.15.1 + attrs==26.1.0 + blinker==1.9.0 + certifi==2026.7.22 + cffi==2.1.1 + cftime==1.6.6.1 + charset-normalizer==3.5.2 + click==8.5.0 + contourpy==1.4.0 + cryptography==50.0.2 + cycler==0.12.1 + dash==3.4.0 + dill==0.4.1 + diskcache==5.6.3 + flask==3.1.3 + fonttools==4.67.0 + h11==0.16.0 + httpcore==1.0.9 + httpx==0.28.1 + httpx-sse==0.4.3 + idna==3.20 + importlib-metadata==9.0.1 + iniconfig==2.3.1 + itsdangerous==2.2.0 + jinja2==3.1.6 + jsonschema==4.26.0 + jsonschema-specifications==2025.9.1 + kiwisolver==1.5.1 + markupsafe==3.0.4 + matplotlib==3.10.9 + mcp==1.30.0 + meson==1.12.1 + multiprocess==0.70.19 + narwhals==2.27.1 + nest-asyncio==1.6.0 + netcdf4==1.7.5 + ninja==1.13.2 + numpy==2.5.4 + packaging==26.3 + pillow==12.3.0 + plotly==6.9.0 + pluggy==1.7.0 + psutil==7.2.2 + pycparser==3.11 + pydantic==2.14.1 + pydantic-core==2.50.1 + pydantic-settings==2.16.0 + pygments==2.21.0 + pyjwt==2.15.1 + pyparsing==3.3.3 + pytest==9.1.1 + python-dateutil==2.9.0.post0 + python-dotenv==1.2.4 + python-multipart==0.0.32 + referencing==0.37.0 + requests==2.34.2 + retrying==1.4.2 + rpds-py==2026.9.1 + scipy==1.18.1 + setuptools==84.0.0 + six==1.17.0 + sse-starlette==3.5.0 + starlette==1.8.0 + tabulate==0.10.0 + typing-extensions==4.16.0 + typing-inspection==0.4.4 + urllib3==2.8.0 + uvicorn==0.54.0 + werkzeug==3.1.9 + zipp==4.1.1 Ready: /home/jenkins/workspace/clubb_dash/.venv-python/bin/python ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-9.1.1, pluggy-1.7.0 rootdir: /home/jenkins/workspace/clubb_dash plugins: dash-3.4.0, anyio-4.15.1 collected 552 items dash_app/pytests/test_activity.py ......... [ 1%] dash_app/pytests/test_agent_integration.py .............. [ 4%] dash_app/pytests/test_agent_plot_actions.py ........ [ 5%] dash_app/pytests/test_agent_services.py ................................ [ 11%] ................. [ 14%] dash_app/pytests/test_agent_tab_registry.py ...... [ 15%] dash_app/pytests/test_agent_tuning.py ............ [ 17%] dash_app/pytests/test_analysis.py ..... [ 18%] dash_app/pytests/test_app_startup.py .......... [ 20%] dash_app/pytests/test_atlas.py . [ 20%] dash_app/pytests/test_bivariate_heatmap.py .. [ 21%] dash_app/pytests/test_callbacks_runs.py ............ [ 23%] dash_app/pytests/test_compile_tab_build_status.py ................. [ 26%] dash_app/pytests/test_custom_plot.py ........ [ 27%] dash_app/pytests/test_dashboard_activity_labels.py . [ 27%] dash_app/pytests/test_dashboard_lifecycle.py ... [ 28%] dash_app/pytests/test_dashboard_manager.py ...... [ 29%] dash_app/pytests/test_equations.py ... [ 30%] dash_app/pytests/test_fill_holes_viewer.py .... [ 30%] dash_app/pytests/test_jax_device.py ..................... [ 34%] dash_app/pytests/test_mcp_endpoint.py ... [ 35%] dash_app/pytests/test_misc_tab.py ... [ 35%] dash_app/pytests/test_netcdf.py ...... [ 36%] dash_app/pytests/test_output_directory_picker.py ...... [ 37%] dash_app/pytests/test_output_discovery.py ....... [ 39%] dash_app/pytests/test_pane_resize.py ... [ 39%] dash_app/pytests/test_param_disclosures.py ........ [ 41%] dash_app/pytests/test_pdf_contour_plot.py ...................... [ 45%] dash_app/pytests/test_performance_polling.py ....... [ 46%] dash_app/pytests/test_persistence.py .... [ 47%] dash_app/pytests/test_plot_case_cache.py .......... [ 48%] dash_app/pytests/test_plot_extraction.py ............................... [ 54%] [ 54%] dash_app/pytests/test_plot_grid_updates.py ..... [ 55%] dash_app/pytests/test_plot_help.py ... [ 55%] dash_app/pytests/test_plot_tasks.py .......... [ 57%] dash_app/pytests/test_plot_transitions.py ............. [ 60%] dash_app/pytests/test_profile_tab.py .............................. [ 65%] dash_app/pytests/test_profiles.py ...... [ 66%] dash_app/pytests/test_pyplotgen_export.py ...... [ 67%] dash_app/pytests/test_pyplotgen_output_handler.py . [ 67%] dash_app/pytests/test_reports_tab.py ....... [ 69%] dash_app/pytests/test_run_broker_simplification.py ..................... [ 73%] [ 73%] dash_app/pytests/test_run_callbacks_settings.py .............. [ 75%] dash_app/pytests/test_run_runtime.py .......... [ 77%] dash_app/pytests/test_runtime.py .. [ 77%] dash_app/pytests/test_runtime_logging.py ..... [ 78%] dash_app/pytests/test_runtime_loss_batches.py . [ 78%] dash_app/pytests/test_sam_3d_reference.py . [ 78%] dash_app/pytests/test_scm_override.py ...... [ 80%] dash_app/pytests/test_selected_build.py ..................... [ 83%] dash_app/pytests/test_state_persistence.py ............. [ 86%] dash_app/pytests/test_stats_selection.py ............................... [ 91%] [ 91%] dash_app/pytests/test_taylor_window_display.py ..... [ 92%] dash_app/pytests/test_tunable_config_save.py ............... [ 95%] dash_app/pytests/test_tune_callbacks_settings.py ............. [ 97%] dash_app/pytests/test_tutorial_tab.py .. [ 98%] dash_app/pytests/test_two_gaussian_model.py ...... [ 99%] dash_app/pytests/test_workspace_selection.py .... [100%] =============================== warnings summary =============================== dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:35: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead legacy_str = getattr(ast, "Str", None) dash_app/pytests/test_plot_case_cache.py: 4120 warnings /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:36: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead if legacy_str is not None and isinstance(node, legacy_str): dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:39: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead legacy_num = getattr(ast, "Num", None) dash_app/pytests/test_plot_case_cache.py: 4120 warnings /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:40: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead if legacy_num is not None and isinstance(node, legacy_num): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - generated xml file: /home/jenkins/workspace/clubb_dash/output/tests/pytests/dash.xml - ============================= slowest 10 durations ============================= 4.18s call dash_app/pytests/test_agent_plot_actions.py::test_profile_png_renderer_writes_a_real_png 1.52s call dash_app/pytests/test_plot_tasks.py::test_browser_updates_selection_immediately_and_ignores_stale_results 1.21s call dash_app/pytests/test_agent_services.py::test_mcp_stdio_discovery_and_structured_error_round_trip 0.95s call dash_app/pytests/test_plot_case_cache.py::test_background_worker_snapshot_resolves_in_main_process 0.73s call dash_app/pytests/test_plot_tasks.py::test_real_worker_inspects_missing_directory_and_serializes_no_update 0.65s call dash_app/pytests/test_agent_services.py::test_mcp_exposes_closed_world_typed_tools_and_annotations 0.44s call dash_app/pytests/test_pdf_contour_plot.py::test_pdf_compare_mode_builds_shared_axis_directory_panels 0.40s call dash_app/pytests/test_netcdf.py::test_shared_netcdf_consumers_import_as_dashboard_packages 0.39s call dash_app/pytests/test_run_broker_simplification.py::test_default_new_scenario_keeps_four_reservations_and_restarts_finished_case 0.35s setup dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once ===================== 552 passed, 8242 warnings in 27.59s ====================== [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] junit Recording test results [Checks API] No suitable checks publisher found. [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS