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Started by Gunther Huebler

Started 15 days ago

Took 1 hr 40 min on built-in

Serialize NetCDF statistics output across OpenMP threads

src/CLUBB_core/stats_netcdf.F90

Gunther Huebler at 3:17 PM 10/3/26

Standardize script arguments (#1373)

compile.py jenkins_tests/clubb_driver/Jenkinsfile jenkins_tests/clubb_gpu_vs_cpu_diffness/Jenkinsfile tests/run_loss_output_consistency.py tests/run_thread_test.py jenkins_tests/clubb_tuner/Jenkinsfile utilities/api_analysis/run_full_api_diagnostics.bash clubb_jax/tests/test_runtime_info.py dash_app/pytests/test_compile_tab_build_status.py run_scripts/run_tuner.py tests/analyze_tuner_sample_history.py utilities/print_tunable_parameters_table.py jenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfile dash_app/pytests/test_profile_tab.py jenkins_tests/clubb_python/Jenkinsfile tests/pytests/test_column_mirror.py tuner/job_runtime.py tests/run_restart_test.py run_scripts/README.md utilities/api_analysis/api_commitment_test.py dash_app/tune_tab/runtime.py run_scripts/run_bindiff_all.py jenkins_tests/clubb_G_unit/Jenkinsfile jenkins_tests/clubb_jax/Jenkinsfile jenkins_tests/clubb_single_prec_build/Jenkinsfile tests/test_fire_tuner.py clubb_jax/README.md run_scripts/run_scm_loss.py dash_app/profile_tab/runtime.py run_scripts/run_scm.py tests/test_monoflux_limiter_GPU.py clubb_jax/run_jax.py dash_app/run_tab/runtime.py jenkins_tests/clubb_plots/Jenkinsfile tests/README.md utilities/api_analysis/create_module_table.py jenkins_tests/clubb_generalized_grid/Jenkinsfile tests/run_python_vs_fortran_cases.py postprocessing/pyplotgen/src/CaseGallerySetup.py run_scripts/run_tuner_job.py tests/run_jax_comparison_mutation_test.py jenkins_tests/clubb_basic_full_run/Jenkinsfile input/flag_sets/README.md tests/pytests/test_jax_compare_forwarding.py run_scripts/run_clubb_w_varying_flags.py run_scripts/run_scm_all.py jenkins_tests/clubb_column_mirror/Jenkinsfile dash_app/compile_tab/build_selector.py postprocessing/latin_hypercube_plotting/variance_analysis_scripts/rms_vs_sample_points/silhs_varying_sp_output.sh utilities/time_clubb.py tests/check_budget_balance.py utilities/create_case_namelist.py dash_app/pytests/test_pyplotgen_export.py dash_app/plot_tab/pyplotgen_runtime.py tests/run_G_unit_tests.py clubb_jax/tests/test_jax_cli_options.py utilities/CLUBBStandardsCheck.py tests/check_mirrored_multi_col_output.py tests/pytests/test_bindiff_report.py utilities/create_multi_col_params.py postprocessing/pyplotgen/pyplotgen.py tuner/README.md postprocessing/pyplotgen/config/Style_definitions.py tuner/presets.py dash_app/compile_tab/runtime.py tests/run_silhs_test.py run_scripts/convergence_run/convergence_config.py clubb_jax/runtime_info.py tuner/system_defaults.py utilities/benchmark_converter.py utilities/convert_to_async.py experimental/experimental_pdfs/python/dash_additions/utilities/refresh_pdf9_parcel_ensemble_lab.py tests/run_clubb_conv_test.py tests/run_jax_vs_fortran_cases.py tests/pytests/test_run_clubb_conv_test.py LLM_prompts/update_python_api_and_drivers.md tests/run_stats_output_consistency.py utilities/pytests/test_time_clubb.py jenkins_tests/clubb_gpu_async_output_matching/Jenkinsfile utilities/split_stats_to_legacy.py postprocessing/pyplotgen/README.md clubb_jax/tests/test_kk_rico_oracle.py tests/run_bindiff_w_flags.py run_scripts/run_clubb_and_pyplotgen.py tuner/tune_clubb.py CMakeLists.txt utilities/parse_argument_list/replace_err_code_type.py utilities/pytests/test_run_script_arguments.py utilities/setup_python_venv.py

noreply at 7:52 PM 10/3/26

Improve agent workflow discovery and completion evidence (#1375)

LLM_prompts/README.md LLM_prompts/update_host_models_after_clubb_changes.md LLM_prompts/jax_porting_workflow.md LLM_prompts/port_underlying_fortran_to_other_languages.md LLM_prompts/dash_app_workflow.md .agents/skills/clubb-jax-port/SKILL.md LLM_prompts/fortran_column_refactor.md LLM_prompts/jenkins_workflow.md LLM_prompts/SHORTCUTS.md LLM_prompts/script_cli_conventions.md AGENTS.md LLM_prompts/update_python_api_and_drivers.md clubb_jax/AGENTS.md .agents/skills/clubb-script-cli/SKILL.md LLM_prompts/numerical_regression_workflow.md

noreply at 1:31 PM 10/4/26

Match Fortran SILHS sampling precision and overlap

clubb_jax/tests/test_silhs_sampling.py clubb_jax/src/SILHS/latin_hypercube_driver_module.py clubb_jax/src/SILHS/transform_to_pdf_module.py clubb_jax/tests/test_silhs_fortran_oracle.py

Gunther Huebler at 3:00 PM 10/4/26

Restore SILHS diagnostics and microphysics host error guards

clubb_jax/src/SILHS/silhs_importance_sample_module.py clubb_jax/tests/test_silhs_diagnostics.py clubb_jax/tests/test_microphysics_integration.py clubb_jax/src/Microphys/microphys_driver.py clubb_jax/src/clubb_case_initalization.py clubb_jax/src/Microphys/microphys_init_cleanup.py clubb_jax/src/Microphys/lh_microphys_driver_module.py clubb_jax/tests/test_microphysics_port_structure.py clubb_jax/src/advance_clubb_to_end.py clubb_jax/SILHS_PORT_NOTES.md clubb_jax/src/SILHS/est_kessler_microphys_module.py clubb_jax/tests/test_microphysics_host_errors.py

Gunther Huebler at 3:02 PM 10/4/26

Document deterministic SILHS comparison patterns

src/SILHS/generate_uniform_sample_module.F90 clubb_jax/src/SILHS/latin_hypercube_driver_module.py clubb_jax/src/SILHS/generate_uniform_sample_module.py src/SILHS/latin_hypercube_driver_module.F90

Gunther Huebler at 3:42 PM 10/4/26

Use definition decorators for microphysics JIT boundaries

clubb_jax/src/advance_clubb_to_end.py clubb_jax/tests/test_microphysics_integration.py clubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.py clubb_jax/src/Microphys/microphys_driver.py clubb_jax/tests/test_microphysics_port_structure.py clubb_jax/src/Microphys/advance_microphys_module.py clubb_jax/tests/test_microphysics_error_paths.py clubb_jax/tests/test_microphysics_host_errors.py

Gunther Huebler at 3:48 PM 10/4/26

Simplify deterministic SILHS sampling comments

src/SILHS/parameters_silhs.F90 clubb_jax/src/Microphys/microphys_init_cleanup.py clubb_jax/src/SILHS/latin_hypercube_driver_module.py clubb_jax/src/SILHS/generate_uniform_sample_module.py clubb_jax/src/SILHS/parameters_silhs.py src/Microphys/microphys_init_cleanup.F90 src/SILHS/generate_uniform_sample_module.F90 src/SILHS/latin_hypercube_driver_module.F90

Gunther Huebler at 4:04 PM 10/4/26

Exclude E3SM from host compatibility updates

LLM_prompts/SHORTCUTS.md LLM_prompts/update_host_models_after_clubb_changes.md

Gunther Huebler at 5:56 PM 10/4/26

Shortening tests timesteps a bit and adding a space for niceness

tests/run_jax_vs_fortran_cases.py clubb_jax/src/advance_clubb_to_end.py

Gunther Huebler at 6:23 PM 10/4/26