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-- The Fortran compiler identification is GNU 13.1.0
-- The C compiler identification is GNU 13.1.0
-- The CXX compiler identification is GNU 13.1.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gfortran - skipped
-- Detecting C compiler ABI info
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-- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gcc - skipped
-- Detecting C compile features
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-- Detecting CXX compiler ABI info
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-- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiling with double precision
-- Performing Test NETCDF_ABI_COMPATIBLE
-- Performing Test NETCDF_ABI_COMPATIBLE - Success
-- SUCCESS: netcdf-fortran found.
-- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so
-- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_jax_branch/build/gcc_DEBUG_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_jax_branch/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_jax_branch/build/gcc_DEBUG_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble
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Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/CLUBB_core/remapping_module.F90:1106:15:
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1822 | subroutine unpack_parameters &
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[682/923] Generating Fortran dyndep file src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Fortran.dd
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[684/923] Generating Fortran dyndep file src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/Fortran.dd
[685/923] Generating Fortran dyndep file src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/Fortran.dd
[686/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/parameters_KK.F90.o
[687/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic_constants.f90.o
[688/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19.F.o
[689/923] Building Fortran object src/CMakeFiles/text_writer_lib.dir/text_writer.F90.o
[690/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa11g.F.o
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[712/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_local_means.F90.o
[713/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/frzh.F.o
[714/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa5g.F.o
[715/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/gamma.F.o
[716/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa7.F.o
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[720/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa9g.F.o
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[722/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esatv.F.o
[723/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqg.F.o
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[726/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa9.F.o
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[729/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esat_new.F.o
[730/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12.F.o
[731/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp2.F.o
[732/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/newexp.F90.o
[733/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/slope.F.o
[734/923] Linking Fortran static library src/libtext_writer_lib.a
[735/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/qtadj.F.o
[736/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqw.F.o
[737/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_planck.F90.o
[738/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/rayle.F.o
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[740/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/AiryFunction.f90.o
[741/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmcol.F.o
[742/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqs.F.o
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[744/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqi.F.o
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[749/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw.F.o
[750/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw.F.o
[751/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_ocastrndm.F90.o
[752/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_iter.F.o
[753/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_bs.F.o
[754/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_iter.F.o
[755/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_ocastrndm.F90.o
[756/923] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjtq.F.o
[757/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic.f90.o
[758/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_utilities.F90.o
[759/923] Linking Fortran static library src/Microphys/COAMPS_microphys/libcoamps_lib.a
[760/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_means.F90.o
[761/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_all_MM.F90.o
[762/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_covar.F90.o
[763/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_means.F90.o
[764/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_Nrm_tendencies.F90.o
[765/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_variances.F90.o
[766/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o
[767/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_rad.F.o
[768/923] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o
[769/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gases_ckd.F90.o
[770/923] Linking Fortran static library src/Microphys/KK_microphys/libKK_microphys_lib.a
[771/923] Generating Fortran dyndep file src/SILHS/CMakeFiles/silhs_lib.dir/Fortran.dd
[772/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/parameters_silhs.F90.o
[773/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_arrays.F90.o
[774/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/est_kessler_microphys_module.F90.o
[775/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/transform_to_pdf_module.F90.o
[776/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_swr.F.o
[777/923] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_lwr.F.o
[778/923] Linking Fortran static library src/Radiation/BUGSrad/libbugsrad_lib.a
[779/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/mt95.F90.o
[780/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/generate_uniform_sample_module.F90.o
[781/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/math_utilities.F90.o
[782/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o
/home/jenkins/workspace/clubb_jax_branch/src/SILHS/silhs_importance_sample_module.F90:642:62:
637 | do category=1, num_importance_categories
| 2
......
642 | rand_vect(sample) < category_cumulative_probs(category+1) ) then
| 1
Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript]
[783/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/lh_microphys_var_covar_module.F90.o
[784/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o
[785/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o
[786/923] Linking Fortran static library src/SILHS/libsilhs_lib.a
[787/923] Generating Fortran dyndep file src/Radiation/CMakeFiles/radiation_lib.dir/Fortran.dd
[788/923] Generating Fortran dyndep file src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/Fortran.dd
[789/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/parameters_radiation.F90.o
[790/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/cos_solar_zen_module.F90.o
[791/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o
[792/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrtype.f90.o
[793/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/quicksort.F90.o
[794/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nr.f90.o
[795/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/rad_lwsw_module.F90.o
[796/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/extended_atmosphere_module.F90.o
[797/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o
[798/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_variables_module.F90.o
[799/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/enhanced_simann.F90.o
[800/923] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o
[801/923] Linking Fortran static library src/Microphys/Morrison_microphys/libmorrison_microphys_lib.a
[802/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrutil.f90.o
[803/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amoeba.f90.o
[804/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amebsa.f90.o
[805/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o
[806/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o
/home/jenkins/workspace/clubb_jax_branch/src/Numerical_recipes/ran_state.f90:8:59:
8 | INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1
| 1
Warning: Integer outside symmetric range implied by Standard Fortran at (1)
[807/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o
[808/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o
[809/923] Linking Fortran static library src/Numerical_recipes/libnumerical_recipes_lib.a
[810/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o
[811/923] Linking Fortran static library src/Radiation/libradiation_lib.a
[812/923] Generating Fortran dyndep file src/Input_fields/CMakeFiles/input_fields_lib.dir/Fortran.dd
[813/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o
[814/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o
[815/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o
[816/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o
[817/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o
[818/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/input_reader.F90:498:28:
491 | do i=1, dim_grid
| 2
......
498 | if ( grid(i) < grid(i-1) ) then
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
[819/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o
[820/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o
[821/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o
[822/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_core/readiopdata_core_module.F90.o
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1038:15:
1038 | if(divT_in(i,nlev+1)==missing_value) divT_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1040:15:
1040 | if(vertdivT_in(i,nlev+1)==missing_value) vertdivT_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1042:15:
1042 | if(divT3d_in(i,nlev+1)==missing_value) divT3d_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1045:15:
1045 | if(divq_in(i,nlev+1)==missing_value) divq_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1047:15:
1047 | if(vertdivq_in(i,nlev+1)==missing_value) vertdivq_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1049:15:
1049 | if(divq3d_in(i,nlev+1)==missing_value) divq3d_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:356:13:
356 | if( ANY(Ts_in == 0.0) ) then
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:620:12:
620 | if(T_in(i,nlev+1)/=missing_value) then
| 1
Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:636:12:
636 | if(T_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:638:12:
638 | if(q_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:640:12:
640 | if(u_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:642:12:
642 | if(v_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:647:15:
647 | if(omega_in(i,nlev+1)==missing_value) omega_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:651:15:
651 | if(w_in(i,nlev+1)==missing_value) w_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:658:12:
658 | if(ug_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:660:12:
660 | if(vg_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1252:42:
1252 | character dim_name*( NF90_MAX_NAME )
| 1
Warning: Unused variable 'dim_name' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1254:33:
1254 | integer var_ndims, dim_size, dims_set, i, n, var_type
| 1
Warning: Unused variable 'dim_size' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1254:43:
1254 | integer var_ndims, dim_size, dims_set, i, n, var_type
| 1
Warning: Unused variable 'dims_set' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1254:46:
1254 | integer var_ndims, dim_size, dims_set, i, n, var_type
| 1
Warning: Unused variable 'i' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1237:60:
1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, &
| 1
Warning: Unused dummy argument 'nlev' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1237:54:
1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, &
| 1
Warning: Unused dummy argument 'ntime' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1238:23:
1238 | var, use_NF90_REAL, status, required)
| 1
Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:1167:67:
1167 | subroutine get_netcdf_var1d_real( NCID, varName, var, use_NF90_REAL, &
| 1
Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:751:51:
751 | get_add_surface_data, ntime, &
| 1
Warning: Unused dummy argument 'get_add_surface_data' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:750:81:
750 | subroutine readiopdata_core_sfc( masterproc, iopfilepath, scamiop_from_global_cam, SFC_FLX_FXD, &
| 1
Warning: Unused dummy argument 'scamiop_from_global_cam' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:290:32:
290 | integer :: STATUS, i, n, nlat, nlon
| 1
Warning: Unused variable 'nlat' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:290:38:
290 | integer :: STATUS, i, n, nlat, nlon
| 1
Warning: Unused variable 'nlon' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_core/readiopdata_core_module.F90:291:19:
291 | integer :: varID, NCID
| 1
Warning: Unused variable 'varid' declared at (1) [-Wunused-variable]
[823/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_module.F90.o
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_module.F90:260:16:
260 | integer :: k
| 1
Warning: Unused variable 'k' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_module.F90:264:17:
264 | qtm_forcing ! Specified total water spec. humidity tendency [kg/kg/s]
| 1
Warning: Unused variable 'qtm_forcing' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_jax_branch/src/readiopdata_module.F90:243:31:
243 | subroutine readiopdata_frc( rtm, gr, thlm_forcing, rtm_forcing )
| 1
Warning: Unused dummy argument 'rtm' at (1) [-Wunused-dummy-argument]
[824/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:39:8:
39 | use constants_clubb, only: &
| 1
Warning: Unused parameter 'kappa' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:57:8:
57 | use input_names, only: &
| 1
Warning: Unused parameter 'omega_name' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:39:8:
39 | use constants_clubb, only: &
| 1
Warning: Unused parameter 'p0' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:165:13:
165 | p_in_Pa, & ! Pressure [Pa]
| 1
Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:160:8:
160 | rt, & ! Total water mixing ratio sounding [kg/kg]
| 1
Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:166:10:
166 | subs ! Vertical velocity sounding [m/s or Pa/s]
| 1
Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:159:11:
159 | theta, & ! Liquid potential temperature sounding [K]
| 1
Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:161:7:
161 | u, & ! u wind sounding [m/s]
| 1
Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:163:8:
163 | ug, & ! u geostrophic wind sounding [m/s]
| 1
Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:162:7:
162 | v, & ! v wind sounding [m/s]
| 1
Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:164:8:
164 | vg, & ! v geostrophic wind sounding [m/s]
| 1
Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_jax_branch/src/Input_fields/sounding.F90:158:7:
158 | z, & ! Altitude [m]
| 1
Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
[825/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o
[826/923] Linking Fortran static library src/Input_fields/libinput_fields_lib.a
[827/923] Generating Fortran dyndep file src/Microphys/CMakeFiles/microphys_lib.dir/Fortran.dd
[828/923] Generating Fortran dyndep file src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Fortran.dd
[829/923] Generating Fortran dyndep file src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/Fortran.dd
[830/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o
[831/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o
[832/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o
[833/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o
[834/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o
[835/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o
[836/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o
[837/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o
[838/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o
[839/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o
[840/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o
[841/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o
[842/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o
[843/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o
[844/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o
[845/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o
/home/jenkins/workspace/clubb_jax_branch/src/Microphys/ice_dfsn_module.F90:282:27:
214 | do k = gr%nzt, 1, -1
| 2
......
282 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) + dmass_ice_cryst(i,k)
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_jax_branch/src/Microphys/ice_dfsn_module.F90:296:27:
214 | do k = gr%nzt, 1, -1
| 2
......
296 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k)
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
[846/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o
[847/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o
[848/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o
[849/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o
[850/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o
[851/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o
/home/jenkins/workspace/clubb_jax_branch/src/G_unit_test_types/fill_holes_tests.F90:407:27:
407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/G_unit_test_types/fill_holes_tests.F90:406:22:
406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/G_unit_test_types/fill_holes_tests.F90:462:22:
462 | if ( any( field_rev_rev /= field ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/G_unit_test_types/fill_holes_tests.F90:221:27:
221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/G_unit_test_types/fill_holes_tests.F90:220:22:
220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/G_unit_test_types/fill_holes_tests.F90:275:22:
275 | if ( any( field_rev_rev /= field ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[852/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o
[853/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o
[854/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o
[855/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o
[856/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o
[857/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
[858/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[859/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[860/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[861/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o
[862/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o
[863/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o
[864/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o
[865/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o
[866/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o
[867/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o
[868/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o
[869/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o
[870/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o
[871/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o
[872/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o
[873/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o
[874/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o
[875/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o
[876/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o
[877/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o
/home/jenkins/workspace/clubb_jax_branch/src/Benchmark_cases/bomex.F90:22:48:
22 | gr, rtm, l_readiopdata, &
| 1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[878/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o
[879/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o
[880/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o
[881/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o
[882/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o
[883/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o
[884/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
[885/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[886/923] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a
[887/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[888/923] Linking Fortran static library src/Benchmark_cases/libbenchmark_cases_lib.a
[889/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
[890/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[891/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[892/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[893/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[894/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[895/923] Linking Fortran static library src/Microphys/libmicrophys_lib.a
[896/923] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd
[897/923] Generating Fortran dyndep file src/CMakeFiles/G_unit_tests.dir/Fortran.dd
[898/923] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
[899/923] Linking Fortran executable src/G_unit_tests
[900/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[901/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
/home/jenkins/workspace/clubb_jax_branch/src/clubb_driver.F90:5539:76:
5539 | p_sfc, rtm_sfc, rtm, l_readiopdata, & !thlm_sfc, &
| 1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[902/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver.F90:255:28:
255 | is_finite_core_value = ( value == value ) .and. ( abs( value ) <= huge( value ) )
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
[903/923] Linking Fortran static library src/libclubb_driver_lib.a
[904/923] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone.dir/Fortran.dd
[905/923] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone_loss.dir/Fortran.dd
[906/923] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd
[907/923] Generating Fortran dyndep file src/CMakeFiles/clubb_thread_test.dir/Fortran.dd
[908/923] Generating Fortran dyndep file src/CMakeFiles/clubb_loss_driver_test.dir/Fortran.dd
[909/923] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_test.dir/Fortran.dd
[910/923] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
[911/923] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
[912/923] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
[913/923] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o
[914/923] Linking Fortran executable src/clubb_thread_test
[915/923] Linking Fortran executable src/clubb_driver_test
[916/923] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:273:14:
273 | if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:278:14:
278 | if ( any( test_correlation /= reference_correlation ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:283:14:
283 | if ( any( test_std_ratio /= reference_std_ratio ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:288:14:
288 | if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:293:14:
293 | if ( any( test_bias_norm /= reference_bias_norm ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:512:14:
512 | if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:521:14:
521 | any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:520:14:
520 | any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:519:14:
519 | any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:518:14:
518 | any( reinit_correlation_1 /= reinit_correlation_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:517:14:
517 | if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:431:14:
431 | if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:371:14:
371 | any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:370:14:
370 | any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:369:14:
369 | any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:368:14:
368 | any( manual_correlation_2 /= manual_correlation_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_jax_branch/src/clubb_loss_driver_test.F90:367:14:
367 | if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[917/923] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[918/923] Linking Fortran executable src/clubb_standalone
[919/923] Linking Fortran executable src/clubb_standalone_loss
[920/923] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o
[921/923] Linking Fortran executable src/clubb_loss_driver_test
[922/923] Linking Fortran executable src/clubb_tuner
[922/923] Install the project...
-- Install configuration: "Debug"
-- Installing: /home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss
-- Set runtime path of "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Expected failure test)
[Pipeline] catchError
[Pipeline] {
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ulimit -s 8388608
+ python3 tests/run_jax_comparison_mutation_test.py
==> No compatible Python found for cpu; uv will download Python 3.12
==> Installing uv 0.11.32 in /home/jenkins/workspace/clubb_jax_branch/.clubb-jax-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_jax_branch/.clubb-jax-tools/bin
uv
uvx
everything's installed!
==> uv is ready: uv 0.11.32 (x86_64-unknown-linux-gnu)
Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB)
Downloaded cpython-3.12.13-linux-x86_64-gnu (download)
Using CPython 3.12.13
Creating virtual environment at: .venv-jax
Activate with: source .venv-jax/bin/activate
==> Installing JAX 0.11.0 (cpu) and requirements from /home/jenkins/workspace/clubb_jax_branch/clubb_jax/requirements.txt
Using Python 3.12.13 environment at: .venv-jax
Resolved 15 packages in 390ms
Downloading pygments (1.2MiB)
Downloading scipy (33.7MiB)
Downloading numpy (15.9MiB)
Downloading netcdf4 (9.7MiB)
Downloading cftime (1.6MiB)
Downloading jax (3.1MiB)
Downloading jaxlib (83.2MiB)
Downloaded cftime
Downloaded pygments
Downloaded netcdf4
Downloaded jax
Downloaded numpy
Downloaded scipy
Downloaded jaxlib
Prepared 15 packages in 5.50s
Installed 15 packages in 41ms
+ certifi==2026.7.22
+ cftime==1.6.6
+ iniconfig==2.3.0
+ jax==0.11.0
+ jaxlib==0.11.0
+ ml-dtypes==0.6.0
+ netcdf4==1.7.4
+ numpy==2.5.3
+ opt-einsum==3.4.0
+ packaging==26.3
+ pluggy==1.6.0
+ pygments==2.21.0
+ pytest==9.1.1
+ scipy==1.18.1
+ tabulate==0.10.0
CLUBB JAX runtime:
Environment: /home/jenkins/workspace/clubb_jax_branch/.venv-jax (Python 3.12)
Accelerator: cpu
JAX: 0.11.0 (jaxlib 0.11.0)
Device: cpu:0
Mutation test artifacts: /home/jenkins/workspace/clubb_jax_branch/output/tests/jax_comparison_mutation_vikza7ma
Control: running unmodified bomex comparison...
Control passed.
Mutation heating: running comparison...
PASS heating: thlm mean absolute difference 0.00015; failing columns [1, 2, 3, 4].
Mutation parameter_handling: running comparison...
PASS parameter_handling: wp3 mean absolute difference 9.25992e-07; failing columns [2, 3, 4].
Mutation first_column: running comparison...
PASS first_column: wp3 mean absolute difference 4.69019e-07; failing columns [2, 3, 4].
Mutation missing_stat: running comparison...
PASS missing_stat: wprtp absent only from JAX output; strict comparison rejected it.
==============================================================================
Expected failure test: PASS
==============================================================================
Case: bomex | 4 timesteps x 60 s | 4 columns | CPU/double
Statistics: input/stats/multi_col_stats.in
Tolerances: JAX-versus-Fortran harness defaults (absolute 1e-07; percentage 1e-07%)
[PASS] Unmodified control — JAX and Fortran matched.
[PASS] heating
Add 1e-6 K/s of spurious heating to every column.
Numerical difference detected; both models completed 4 timesteps.
thlm: mean absolute difference 0.00015; mean percentage difference 4.91235e-05%
Failing columns: 1, 2, 3, 4; first comparison failure: timestep 1.
[PASS] parameter_handling
Load C8 as [0.2, 0.3, 0.4, 0.5] instead of [0.2, 0.4, 0.6, 0.8].
Numerical difference detected; both models completed 4 timesteps.
wp3: mean absolute difference 9.25992e-07; mean percentage difference 0.244887%
Failing columns: 2, 3, 4; first comparison failure: timestep 1.
[PASS] first_column
Use column 1's previous wp3 in every column's timestep equation.
Numerical difference detected; both models completed 4 timesteps.
wp3: mean absolute difference 4.69019e-07; mean percentage difference 0.118965%
Failing columns: 2, 3, 4; first comparison failure: timestep 3.
[PASS] missing_stat
Omit wprtp from JAX statistics output while keeping its calculation.
wprtp is missing only from JAX output; both models completed 4 timesteps.
Strict bindiff detected the missing variable; other stats were unchanged.
Result: PASS — 4/4 mutations verified | 138.1 s
Logs and outputs: /home/jenkins/workspace/clubb_jax_branch/output/tests/jax_comparison_mutation_vikza7ma
==============================================================================
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Jax vs Fortran: standard stats)
[Pipeline] catchError
[Pipeline] {
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ulimit -s 8388608
+ ./tests/run_jax_vs_fortran_cases.py -stats input/stats/standard_stats.in -j 4
CLUBB JAX runtime:
Environment: /home/jenkins/workspace/clubb_jax_branch/.venv-jax (Python 3.12)
Accelerator: cpu
JAX: 0.11.0 (jaxlib 0.11.0)
Device: cpu:0
Run settings:
Output: /home/jenkins/workspace/clubb_jax_branch/output/tests/jax_driver_test_results
Statistics: input/stats/standard_stats.in
Debug: case default
Forwarded to both runs: -stats input/stats/standard_stats.in
Columns: 4
Workers: 4
Comparison limits: absolute 1e-07; percentage 1e-07%
Cases and flag sets:
20 cases x 1 flag set = 20 JAX/Fortran pairs
Flag sets:
default
Cases:
arm (360 iterations)
atex (360 iterations)
bomex (native duration)
cobra (360 iterations)
dycoms2_rf01 (native duration)
dycoms2_rf01_fixed_sst (300 iterations)
dycoms2_rf02_nd (native duration)
fire (native duration)
gabls2 (360 iterations)
gabls3_night (360 iterations)
jun25_altocu (180 iterations)
neutral (native duration)
wangara (native duration)
dycoms2_rf02_do (native duration)
dycoms2_rf02_ds (240 iterations)
lba_kk (360 iterations)
- input case: lba
- microphysics_setting.microphys_scheme = "khairoutdinov_kogan"
- microphysics_setting.lh_microphys_type = "disabled"
- microphysics_setting.l_ice_microphys = .false.
- microphysics_setting.l_graupel = .false.
rico (380 iterations)
- dt_main: 60 s
lba (93 iterations)
- percentage limit: 0.001%
- microphysics_setting.lh_microphys_type = "disabled"
clex9_oct14 (73 iterations)
- percentage limit: 0.001%
nov11_altocu (62 iterations)
- percentage limit: 0.001%
[Status ] Flag set Case Timesteps JAX (s) Fortran (s) Total (s)
-----------------------------------------------------------------------------------------------------------------
[match ] default bomex 360 / 360 240.7 7.4 255.8
[match ] default arm 360 / 360 245.1 9.2 263.1
[match ] default cobra 360 / 360 258.0 8.4 274.0
[match ] default atex 360 / 360 260.2 11.7 281.8
Sending interrupt signal to process
Aborted by Gunther Huebler
[diff ] default fire - 142.4 3.7 149.4
Comparison interrupted; stopped all active case process groups.
script returned exit code 143
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Jax Python vs Fortran cases w varying flags)
Stage "Run Jax Python vs Fortran cases w varying flags" skipped due to earlier failure(s)
[Pipeline] getContext
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: bd3068fb-8d6a-4f7e-8783-1f119f199d01
Finished: ABORTED