+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_r8029_flags_gfortran_test_config
Directory 1 is b2e170923249df969fc5b3c0057edce4c1138e7d
Directory 2 is bcbcd985bf11702799629543e90e6e07a95ddbe5
Using reporting threshold: 0.0
The following cases will be compared: ['bomex', 'dycoms2_rf01']
###DIFFING bomex netCDF (*.nc) files###
>The linux diff detected differences in bomex_stats.nc<
>>No differences detected in the common fields in file bomex_stats.nc<<
>>>Differences in linux diff but no differences in common variables detected for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>The linux diff detected differences in dycoms2_rf01_stats.nc<
>>No differences detected in the common fields in file dycoms2_rf01_stats.nc<<
>>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf01.<<<
**********************************************************************************************************
SUMMARY:
Differences detected by linux diff but no differences in the common variables of the netCDF files compared.
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test
Using /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test with origin https://github.com/larson-group/clubb.git
Output Save Mode: none
Using branch: master
Making list from 'UnresolvedCommits':
CheckRange = True: Getting commit range
Run Output Path: output
Run commands: ['python compile.py -debug', '\nrm -rf output', 'mkdir output', '\ncp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters', '\npython run_scripts/run_scm.py bomex', '\npython run_scripts/run_scm.py dycoms2_rf01']
Diffing command: python3 run_scripts/run_bindiff_all.py
=============================== Running Test ===============================
Parsing message from commit: 0c709755aa0cbd9a53923dc8ea2cd62f07913aa6
Parsing message from commit: b2e170923249df969fc5b3c0057edce4c1138e7d
Checking Commit: 0c709755aa0cbd9a53923dc8ea2cd62f07913aa6
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: b2e170923249df969fc5b3c0057edce4c1138e7d
Running: final commit to check, not labelled BIT_CHANGING
Checking out b2e170923249df969fc5b3c0057edce4c1138e7d
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters'
Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters'
Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters'
Running: 'python run_scripts/run_scm.py bomex'
Running: 'python run_scripts/run_scm.py dycoms2_rf01'
Checking out bcbcd985bf11702799629543e90e6e07a95ddbe5
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters'
Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters'
Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters'
Running: 'python run_scripts/run_scm.py bomex'
Running: 'python run_scripts/run_scm.py dycoms2_rf01'
Diffing: 'python3 run_scripts/run_bindiff_all.py b2e170923249df969fc5b3c0057edce4c1138e7d bcbcd985bf11702799629543e90e6e07a95ddbe5'
=============================== Test Results ===============================
Commit Range Checked = bcbcd985bf11702799629543e90e6e07a95ddbe5...b2e170923249df969fc5b3c0057edce4c1138e7d
No new Unresolved commits found.
No fake BIT_CHANGING commits found.
No remaining Unresolved Commits.
=============================== Updating Config File ===============================
Saving into UnresolvedCommits:
Saving into BaselineCommit: b2e170923249df969fc5b3c0057edce4c1138e7d
=============================== Cleanup ===============================
Removing all generated output
REMOVING: bcbcd985bf11702799629543e90e6e07a95ddbe5
REMOVING: b2e170923249df969fc5b3c0057edce4c1138e7d
================== Unresolved Commit Status ==================
No remaining Unresolved Commits.
Exiting with code: 0
