+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_r8029_flags_gfortran_test_config
multicol_def namelist not found in clubb.in -- defaulting to ngrdcol = 1
Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used.
Program exited normally
multicol_def namelist not found in clubb.in -- defaulting to ngrdcol = 1
Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used.
Program exited normally
multicol_def namelist not found in clubb.in -- defaulting to ngrdcol = 1
Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used.
Program exited normally
multicol_def namelist not found in clubb.in -- defaulting to ngrdcol = 1
Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used.
Program exited normally
Directory 1 is 0da744a4b04f078044dcee08c614ad2a47916751
Directory 2 is 61aa970643913037e2766554210e4527bb5e8171
Using reporting threshold: 0.0
The following cases will be compared: ['bomex', 'dycoms2_rf01']
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_zm.nc<
>No differences detected by the linux diff in bomex_zt.nc<
>No differences detected by the linux diff in bomex_sfc.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_zm.nc<
>No differences detected by the linux diff in dycoms2_rf01_zt.nc<
>No differences detected by the linux diff in dycoms2_rf01_sfc.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
multicol_def namelist not found in clubb.in -- defaulting to ngrdcol = 1
Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used.
Program exited normally
multicol_def namelist not found in clubb.in -- defaulting to ngrdcol = 1
Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used.
Program exited normally
Directory 1 is 040e9961b5b422803a0aa816c5921be9576aa4a8
Directory 2 is 0da744a4b04f078044dcee08c614ad2a47916751
Using reporting threshold: 0.0
The following cases will be compared: ['bomex', 'dycoms2_rf01']
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_zm.nc<
>No differences detected by the linux diff in bomex_zt.nc<
>No differences detected by the linux diff in bomex_sfc.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_zm.nc<
>No differences detected by the linux diff in dycoms2_rf01_zt.nc<
>No differences detected by the linux diff in dycoms2_rf01_sfc.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test
Using /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test with origin https://github.com/larson-group/clubb.git
Output Save Mode: none
Using branch: master
Making list from 'UnresolvedCommits':
CheckRange = True: Getting commit range
Run Output Path: output
Run commands: ['python compile.py -debug', '\nrm -rf output', 'mkdir output', '\ncp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters', '\npython run_scripts/run_scm.py bomex', '\npython run_scripts/run_scm.py dycoms2_rf01']
Diffing command: python3 run_scripts/run_bindiff_all.py
=============================== Running Test ===============================
Parsing message from commit: d5703f0d199f44b4fb66df14b4ebfcdb14b57c19
Parsing message from commit: 0da744a4b04f078044dcee08c614ad2a47916751
Parsing message from commit: 040e9961b5b422803a0aa816c5921be9576aa4a8
Found: BIT_CHANGING
Checking Commit: d5703f0d199f44b4fb66df14b4ebfcdb14b57c19
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 0da744a4b04f078044dcee08c614ad2a47916751
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 040e9961b5b422803a0aa816c5921be9576aa4a8
Checking out 0da744a4b04f078044dcee08c614ad2a47916751
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters'
Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters'
Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters'
Running: 'python run_scripts/run_scm.py bomex'
Running: 'python run_scripts/run_scm.py dycoms2_rf01'
Checking out 61aa970643913037e2766554210e4527bb5e8171
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters'
Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters'
Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters'
Running: 'python run_scripts/run_scm.py bomex'
Running: 'python run_scripts/run_scm.py dycoms2_rf01'
Diffing: 'python3 run_scripts/run_bindiff_all.py 0da744a4b04f078044dcee08c614ad2a47916751 61aa970643913037e2766554210e4527bb5e8171'
Checking out 040e9961b5b422803a0aa816c5921be9576aa4a8
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters'
Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters'
Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters'
Running: 'python run_scripts/run_scm.py bomex'
Running: 'python run_scripts/run_scm.py dycoms2_rf01'
Output from 0da744a4b04f078044dcee08c614ad2a47916751 already saved
Diffing: 'python3 run_scripts/run_bindiff_all.py 040e9961b5b422803a0aa816c5921be9576aa4a8 0da744a4b04f078044dcee08c614ad2a47916751'
WARNING: commit '040e9961b5b422803a0aa816c5921be9576aa4a8' was supposed to be BIT_CHANGING, but is not.
=============================== Test Results ===============================
Commit Range Checked = 61aa970643913037e2766554210e4527bb5e8171...040e9961b5b422803a0aa816c5921be9576aa4a8
No new Unresolved commits found.
Fake BIT_CHANGING Commits:
040e9961b5b422803a0aa816c5921be9576aa4a8
No remaining Unresolved Commits.
=============================== Updating Config File ===============================
Saving into UnresolvedCommits:
Saving into BaselineCommit: 040e9961b5b422803a0aa816c5921be9576aa4a8
=============================== Cleanup ===============================
Removing all generated output
REMOVING: 61aa970643913037e2766554210e4527bb5e8171
REMOVING: 0da744a4b04f078044dcee08c614ad2a47916751
REMOVING: 040e9961b5b422803a0aa816c5921be9576aa4a8
================== Unresolved Commit Status ==================
No remaining Unresolved Commits.
Exiting with code: 0
