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Started by an SCM change Obtained jenkins_tests/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 7ece9fa5eafbaa094fd23095d704a861c5c902bd (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 7ece9fa5eafbaa094fd23095d704a861c5c902bd # timeout=10 Commit message: "Mono Flux Optimizations (#1189)" > git rev-list --no-walk 6c01610082f21f5cb13460de2de4d4970351abdc # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/bit_diff_clubb_bc_r8092_config .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/grid_class.F90:2336:8: 2336 | use constants_clubb, only: & | 1 Warning: Unused parameter 'one' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/grid_class.F90:1994:8: 1994 | use constants_clubb, only: & | 1 Warning: Unused parameter 'one' which has been explicitly imported at (1) [-Wunused-parameter] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_KK_microphys.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_coamps.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_bugsrad.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_morrison.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libsilhs.a ../src/Benchmark_cases/cloud_sed_module.F90:173:45: 173 | if ( zt2zm( gr, rcm, k ) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function 'redirect_interpolated_azm_k' at (1) might not be evaluated [-Wfunction-elimination] ../src/ice_dfsn_module.F90:275:25: 210 | do k = gr%nzt, 1, -1 | 2 ...... 275 | mass_ice_cryst(k-1) = mass_ice_cryst(k) & | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] ../src/ice_dfsn_module.F90:290:25: 210 | do k = gr%nzt, 1, -1 | 2 ...... 290 | mass_ice_cryst(k-1) = mass_ice_cryst(k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] ../src/morrison_microphys_module.F90:20:33: 20 | saturation_formula, & | 1 Warning: Unused dummy argument 'saturation_formula' at (1) [-Wunused-dummy-argument] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nzt, & ! In | 1 Warning: Unused dummy argument 'gr' at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_other.a CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Expected read_random_seed for end function. CLUBBStandardsCheck.pl WARNING: Endings of either program, module, subroutine, or function blocks to not match the beginning ../src/error.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Missing 'implicit none' statements. 'Implicit None' check FAILED! CLUBBStandardsCheck.pl Add a line containing 'implicit none' to each program, module, subroutine, and function. ../src/CLUBB_core/mt95.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 696 : ! MONOFLUX TEST COMMENT DO NOT REMOVE if( any(wpxp_net_adjust /= 0.0) ) write(fstderr,*) "MONOFLUX: wpxp adjusted " CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/mono_flux_limiter.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1548 : !$acc data copyin( C_uu_shr_zeros, C_uu_shr_plus_one, C11_Skw_fnc_zeros, C11_Skw_fnc_plus_one ) & CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1571 : lhs_wp3_pr2_term ) ! intent(out) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 2677 : !$acc data copyin( C_uu_buoy_zeros, C_uu_buoy_plus_one, C11_Skw_fnc_zeros, C11_Skw_fnc_plus_one ) & CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_wp2_wp3_module.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1916 : rhs_bp ) ! intent(out) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1921 : call wpxp_terms_bp_pr3_rhs( nzm, ngrdcol, C7_Skw_fnc_plus_one, thv_ds_zm, xpthvp, & ! intent(in) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1922 : rhs_pr3 ) ! intent(out) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_xm_wpxp_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. configurable_multi_column_nl not found, setting num_standalone_columns = 1 Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used. Program exited normally configurable_multi_column_nl not found, setting num_standalone_columns = 1 Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used. Program exited normally Directory 1 is 6c01610082f21f5cb13460de2de4d4970351abdc Directory 2 is 6c01610082f21f5cb13460de2de4d4970351abdc Using reporting threshold: 0.0 The following cases will be compared: ['bomex', 'dycoms2_rf01'] ###DIFFING bomex netCDF (*.nc) files### >No differences detected by the linux diff in bomex_zm.nc< >No differences detected by the linux diff in bomex_zt.nc< >No differences detected by the linux diff in bomex_sfc.nc< >>>The linux diff could not detect any differences in the file pairs for case bomex.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >No differences detected by the linux diff in dycoms2_rf01_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_zt.nc< >No differences detected by the linux diff in dycoms2_rf01_sfc.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<< ********************************************************************************************************** SUMMARY: Linux diff did not detect any differences in the compared files. ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................./home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/mono_flux_limiter.F90:456:9: 456 | tmp, & | 1 Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable] ../src/morrison_microphys_module.F90:20:33: 20 | saturation_formula, & | 1 Warning: Unused dummy argument 'saturation_formula' at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Expected read_random_seed for end function. CLUBBStandardsCheck.pl WARNING: Endings of either program, module, subroutine, or function blocks to not match the beginning ../src/error.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Missing 'implicit none' statements. 'Implicit None' check FAILED! CLUBBStandardsCheck.pl Add a line containing 'implicit none' to each program, module, subroutine, and function. ../src/CLUBB_core/mt95.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 718 : ! MONOFLUX TEST COMMENT DO NOT REMOVE if( any(wpxp_net_adjust /= 0.0) ) write(fstderr,*) "MONOFLUX: wpxp adjusted " CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/mono_flux_limiter.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1548 : !$acc data copyin( C_uu_shr_zeros, C_uu_shr_plus_one, C11_Skw_fnc_zeros, C11_Skw_fnc_plus_one ) & CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1571 : lhs_wp3_pr2_term ) ! intent(out) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 2677 : !$acc data copyin( C_uu_buoy_zeros, C_uu_buoy_plus_one, C11_Skw_fnc_zeros, C11_Skw_fnc_plus_one ) & CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_wp2_wp3_module.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1916 : rhs_bp ) ! intent(out) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1921 : call wpxp_terms_bp_pr3_rhs( nzm, ngrdcol, C7_Skw_fnc_plus_one, thv_ds_zm, xpthvp, & ! intent(in) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1922 : rhs_pr3 ) ! intent(out) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_xm_wpxp_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. configurable_multi_column_nl not found, setting num_standalone_columns = 1 Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used. Program exited normally configurable_multi_column_nl not found, setting num_standalone_columns = 1 Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used. Program exited normally Directory 1 is 7ece9fa5eafbaa094fd23095d704a861c5c902bd Directory 2 is 6c01610082f21f5cb13460de2de4d4970351abdc Using reporting threshold: 0.0 The following cases will be compared: ['bomex', 'dycoms2_rf01'] ###DIFFING bomex netCDF (*.nc) files### >The linux diff detected differences in bomex_zm.nc< >>Differences above threshold were detected in the common fields in file bomex_zm.nc<< >No differences detected by the linux diff in bomex_zt.nc< >No differences detected by the linux diff in bomex_sfc.nc< >>>Differences in common variables detected for case bomex<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf01_zm.nc< >>Differences above threshold were detected in the common fields in file dycoms2_rf01_zm.nc<< >No differences detected by the linux diff in dycoms2_rf01_zt.nc< >No differences detected by the linux diff in dycoms2_rf01_sfc.nc< >>>Differences in common variables detected for case dycoms2_rf01<<< ********************************************************************************************************** SUMMARY: There were differences detected in the common variables in netCDF (*.nc) files. =============================== Configuring Test =============================== Working directory set to: . Trying to clone repo... Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo Output Save Mode: none Using branch: master Making list from 'UnresolvedCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\ncp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm.bash bomex', '\nrepo/run_scripts/run_scm.bash dycoms2_rf01'] Diffing command: python3 repo/run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: 7ece9fa5eafbaa094fd23095d704a861c5c902bd Found: BIT_CHANGING Checking Commit: 7ece9fa5eafbaa094fd23095d704a861c5c902bd Checking out 6c01610082f21f5cb13460de2de4d4970351abdc Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm.bash bomex' Running: ' repo/run_scripts/run_scm.bash dycoms2_rf01' Output from 6c01610082f21f5cb13460de2de4d4970351abdc already saved Diffing: 'python3 repo/run_scripts/run_bindiff_all.py 6c01610082f21f5cb13460de2de4d4970351abdc 6c01610082f21f5cb13460de2de4d4970351abdc' Checking out 7ece9fa5eafbaa094fd23095d704a861c5c902bd Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm.bash bomex' Running: ' repo/run_scripts/run_scm.bash dycoms2_rf01' Output from 6c01610082f21f5cb13460de2de4d4970351abdc already saved Diffing: 'python3 repo/run_scripts/run_bindiff_all.py 7ece9fa5eafbaa094fd23095d704a861c5c902bd 6c01610082f21f5cb13460de2de4d4970351abdc' Commit '7ece9fa5eafbaa094fd23095d704a861c5c902bd' is BIT_CHANGING and properly labelled as such. =============================== Test Results =============================== Commit Range Checked = 6c01610082f21f5cb13460de2de4d4970351abdc...7ece9fa5eafbaa094fd23095d704a861c5c902bd No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 7ece9fa5eafbaa094fd23095d704a861c5c902bd =============================== Cleanup =============================== Removed repo. Removing all generated output REMOVING: 6c01610082f21f5cb13460de2de4d4970351abdc REMOVING: 7ece9fa5eafbaa094fd23095d704a861c5c902bd ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS