Started by an SCM change Obtained jenkins_tests/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 2f3a8a9c995174067f2a6687aff1fa96de2452e3 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 2f3a8a9c995174067f2a6687aff1fa96de2452e3 # timeout=10 Commit message: "Add l_smooth_Heaviside_tau_wpxp to smooth discontinuity in invrs_tau_wpxp_zm" > git rev-list --no-walk 6dff441959e8cdb1eb5c52576309eb27f4f619c1 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/bit_diff_clubb_bc_r8092_config ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32: 2520 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_KK_microphys.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_bugsrad.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_coamps.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:327:13: 327 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_morrison.a ../src/Benchmark_cases/cloud_sed_module.F90:168:44: 168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_other.a ../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8: 24 | use clubb_precision, only: & | 1 Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 842 : write(iunit,*) "l_fix_w_chi_eta_correlations = ", clubb_config_flags%l_fix_w_chi_eta_correlations CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 859 : write(iunit,*) "l_use_tke_in_wp3_pr_turb_term = ", clubb_config_flags%l_use_tke_in_wp3_pr_turb_term CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/model_flags.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32: 2520 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:327:13: 327 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ../src/Benchmark_cases/cloud_sed_module.F90:168:44: 168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8: 24 | use clubb_precision, only: & | 1 Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/2f3a8a9c995174067f2a6687aff1fa96de2452e3. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/6dff441959e8cdb1eb5c52576309eb27f4f619c1. Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing bomex netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing dycoms2_rf01 netCDF (*.nc) files There were no differences detected! =============================== Configuring Test =============================== Working directory set to: . Trying to clone repo... Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo Output Save Mode: none Using branch: master Commits to test vs the baseline (6dff441959e8cdb1eb5c52576309eb27f4f619c1) 2f3a8a9c995174067f2a6687aff1fa96de2452e3 Making list from 'UnresolvedCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\ncp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm.bash bomex', '\nrepo/run_scripts/run_scm.bash dycoms2_rf01'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: 2f3a8a9c995174067f2a6687aff1fa96de2452e3 Checking Commit: 2f3a8a9c995174067f2a6687aff1fa96de2452e3 Running: final commit to check, not labelled BIT_CHANGING Checking out 2f3a8a9c995174067f2a6687aff1fa96de2452e3 Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm.bash bomex' Running: ' repo/run_scripts/run_scm.bash dycoms2_rf01' Checking out 6dff441959e8cdb1eb5c52576309eb27f4f619c1 Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm.bash bomex' Running: ' repo/run_scripts/run_scm.bash dycoms2_rf01' Diffing: 'repo/run_scripts/run_bindiff_all.bash 2f3a8a9c995174067f2a6687aff1fa96de2452e3 6dff441959e8cdb1eb5c52576309eb27f4f619c1' =============================== Test Results =============================== Commit Range Checked = 6dff441959e8cdb1eb5c52576309eb27f4f619c1...2f3a8a9c995174067f2a6687aff1fa96de2452e3 No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 2f3a8a9c995174067f2a6687aff1fa96de2452e3 =============================== Cleanup =============================== Removed repo. Removing all generated output REMOVING: 6dff441959e8cdb1eb5c52576309eb27f4f619c1 REMOVING: 2f3a8a9c995174067f2a6687aff1fa96de2452e3 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS