Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/bit_diff_clubb_bc_r8092_config
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_gfdlact.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/saturation.F90:1074:32:
1074 | subroutine sat_vapor_press_ice( nz, ngrdcol, T_in_K, saturation_formula, &
| ^
Warning: 'sat_vapor_press_ice' defined but not used [-Wunused-function]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28:
491 | do i=1, dim_grid
| 2
......
498 | if ( grid(i) < grid(i-1) ) then
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2136:32:
2136 | subroutine init_parameters_999( &
| ^
Warning: 'init_parameters_999' defined but not used [-Wunused-function]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/fill_holes.F90:664:41:
664 | rho_ds_zm, rho_ds_zt, exner, & ! Intent(in)
| 1
Warning: Unused dummy argument 'rho_ds_zm' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:5045:53:
5045 | call calc_trapezoid_zm( nzm, nzt, ngrdcol, gr, wpthvp, wpthvp_zt, & ! Intent(in)
| 1
Warning: Same actual argument associated with INTENT(IN) argument 'variable_zm' and INTENT(OUT) argument 'trapezoid_zm' at (1)
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:5048:53:
5048 | call calc_trapezoid_zm( nzm, nzt, ngrdcol, gr, thlpthvp, thlpthvp_zt, & ! Intent(in)
| 1
Warning: Same actual argument associated with INTENT(IN) argument 'variable_zm' and INTENT(OUT) argument 'trapezoid_zm' at (1)
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:5051:53:
5051 | call calc_trapezoid_zm( nzm, nzt, ngrdcol, gr, rtpthvp, rtpthvp_zt, & ! Intent(in)
| 1
Warning: Same actual argument associated with INTENT(IN) argument 'variable_zm' and INTENT(OUT) argument 'trapezoid_zm' at (1)
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:4939:34:
4939 | wprtp2 )
| 1
Warning: Same actual argument associated with INTENT(OUT) argument 'trapezoid_zt' and INTENT(IN) argument 'variable_zt' at (1)
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:4944:34:
4944 | wpthlp2 )
| 1
Warning: Same actual argument associated with INTENT(OUT) argument 'trapezoid_zt' and INTENT(IN) argument 'variable_zt' at (1)
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:4949:34:
4949 | wprtpthlp )
| 1
Warning: Same actual argument associated with INTENT(OUT) argument 'trapezoid_zt' and INTENT(IN) argument 'variable_zt' at (1)
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:4974:30:
4974 | cloud_frac )
| 1
Warning: Same actual argument associated with INTENT(OUT) argument 'trapezoid_zt' and INTENT(IN) argument 'variable_zt' at (1)
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:4978:30:
4978 | ice_supersat_frac )
| 1
Warning: Same actual argument associated with INTENT(OUT) argument 'trapezoid_zt' and INTENT(IN) argument 'variable_zt' at (1)
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:4982:30:
4982 | rcm )
| 1
Warning: Same actual argument associated with INTENT(OUT) argument 'trapezoid_zt' and INTENT(IN) argument 'variable_zt' at (1)
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:4986:30:
4986 | wp2thvp )
| 1
Warning: Same actual argument associated with INTENT(OUT) argument 'trapezoid_zt' and INTENT(IN) argument 'variable_zt' at (1)
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:4185:40:
4185 | subroutine check_clubb_settings( nzmax, params, & ! intent(in)
| 1
Warning: Unused dummy argument 'nzmax' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:144:23:
144 | hydromet, l_mix_rat_hm, & ! intent(in)
| 1
Warning: Unused dummy argument 'hydromet' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/clubb_api_module.F90:3539:49:
3539 | subroutine stats_end_timestep_api( clubb_params, stats_metadata, &
| 1
Warning: Unused dummy argument 'clubb_params' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/clubb_api_module.F90:3546:55:
3546 | l_standard_term_ta & ! Unused
| 1
Warning: Unused dummy argument 'l_standard_term_ta' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/clubb_api_module.F90:3545:48:
3545 | l_tke_aniso, & ! Unused
| 1
Warning: Unused dummy argument 'l_tke_aniso' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/clubb_api_module.F90:3544:49:
3544 | , l_uv_nudge, & ! Unused
| 1
Warning: Unused dummy argument 'l_uv_nudge' at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_param.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_lapack.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libmicrophys_utils.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_parabolic.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_KK_microphys.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_coamps.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_bugsrad.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62:
633 | do category=1, num_importance_categories
| 2
......
638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then
| 1
Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_morrison.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:616:58:
616 | subroutine clip_transform_silhs_output_api_multi_col( gr, &
| 1
Warning: Unused dummy argument 'gr' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:522:59:
522 | subroutine clip_transform_silhs_output_api_single_col( gr, &
| 1
Warning: Unused dummy argument 'gr' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:323:13:
323 | rho_ds_zt, & ! Unused
| 1
Warning: Unused dummy argument 'rho_ds_zt' at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libsilhs.a
../src/ice_dfsn_module.F90:275:25:
210 | do k = gr%nzt, 1, -1
| 2
......
275 | mass_ice_cryst(k-1) = mass_ice_cryst(k) &
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
../src/ice_dfsn_module.F90:290:25:
210 | do k = gr%nzt, 1, -1
| 2
......
290 | mass_ice_cryst(k-1) = mass_ice_cryst(k)
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
../src/Benchmark_cases/cloud_sed_module.F90:173:45:
173 | if ( zt2zm( gr, rcm, k ) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then
| 1
Warning: Impure function 'redirect_interpolated_azm_k' at (1) might not be evaluated [-Wfunction-elimination]
../src/morrison_microphys_module.F90:20:33:
20 | saturation_formula, &
| 1
Warning: Unused dummy argument 'saturation_formula' at (1) [-Wunused-dummy-argument]
../src/Benchmark_cases/neutral_case.F90:21:51:
21 | subroutine neutral_case_sfclyr( time, z, thlm_sfc, &
| 1
Warning: Unused dummy argument 'thlm_sfc' at (1) [-Wunused-dummy-argument]
../src/Benchmark_cases/neutral_case.F90:21:41:
21 | subroutine neutral_case_sfclyr( time, z, thlm_sfc, &
| 1
Warning: Unused dummy argument 'z' at (1) [-Wunused-dummy-argument]
../src/KK_microphys_module.F90:43:35:
43 | subroutine KK_local_microphys( gr, dt, nzt, & ! In
| 1
Warning: Unused dummy argument 'gr' at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_other.a
CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Expected read_random_seed for end function.
CLUBBStandardsCheck.pl WARNING: Endings of either program, module, subroutine, or function blocks to not match the beginning
../src/error.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Missing 'implicit none' statements. 'Implicit None' check FAILED!
CLUBBStandardsCheck.pl Add a line containing 'implicit none' to each program, module, subroutine, and function.
../src/CLUBB_core/mt95.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
configurable_multi_column_nl not found, setting num_standalone_columns = 1
Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used.
Program exited normally
configurable_multi_column_nl not found, setting num_standalone_columns = 1
Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used.
Program exited normally
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Expected read_random_seed for end function.
CLUBBStandardsCheck.pl WARNING: Endings of either program, module, subroutine, or function blocks to not match the beginning
../src/error.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Missing 'implicit none' statements. 'Implicit None' check FAILED!
CLUBBStandardsCheck.pl Add a line containing 'implicit none' to each program, module, subroutine, and function.
../src/CLUBB_core/mt95.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
configurable_multi_column_nl not found, setting num_standalone_columns = 1
Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used.
Program exited normally
configurable_multi_column_nl not found, setting num_standalone_columns = 1
Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used.
Program exited normally
Directory 1 is 17f710e467c2f0d81037dcba0a0ea12b4c51d1a8
Directory 2 is 1632cf12730e5062a99c07d6718a0ceee5d48c0a
Using reporting threshold: 0.0
The following cases will be compared: ['bomex', 'dycoms2_rf01']
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_zm.nc<
>No differences detected by the linux diff in bomex_zt.nc<
>No differences detected by the linux diff in bomex_sfc.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_zm.nc<
>No differences detected by the linux diff in dycoms2_rf01_zt.nc<
>No differences detected by the linux diff in dycoms2_rf01_sfc.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
=============================== Configuring Test ===============================
Working directory set to: .
Trying to clone repo...
Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo
Output Save Mode: none
Using branch: master
Making list from 'UnresolvedCommits':
Run Output Path: repo/output
Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\ncp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm.bash bomex', '\nrepo/run_scripts/run_scm.bash dycoms2_rf01']
Diffing command: python3 repo/run_scripts/run_bindiff_all.py
=============================== Running Test ===============================
Parsing message from commit: 17f710e467c2f0d81037dcba0a0ea12b4c51d1a8
Checking Commit: 17f710e467c2f0d81037dcba0a0ea12b4c51d1a8
Running: final commit to check, not labelled BIT_CHANGING
Checking out 17f710e467c2f0d81037dcba0a0ea12b4c51d1a8
Running: 'repo/compile/compile.bash'
Running: '
rm -rf repo/output'
Running: 'mkdir repo/output'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters'
Running: '
repo/run_scripts/run_scm.bash bomex'
Running: '
repo/run_scripts/run_scm.bash dycoms2_rf01'
Checking out 1632cf12730e5062a99c07d6718a0ceee5d48c0a
Running: 'repo/compile/compile.bash'
Running: '
rm -rf repo/output'
Running: 'mkdir repo/output'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters'
Running: '
repo/run_scripts/run_scm.bash bomex'
Running: '
repo/run_scripts/run_scm.bash dycoms2_rf01'
Diffing: 'python3 repo/run_scripts/run_bindiff_all.py 17f710e467c2f0d81037dcba0a0ea12b4c51d1a8 1632cf12730e5062a99c07d6718a0ceee5d48c0a'
=============================== Test Results ===============================
Commit Range Checked = 1632cf12730e5062a99c07d6718a0ceee5d48c0a...17f710e467c2f0d81037dcba0a0ea12b4c51d1a8
No new Unresolved commits found.
No fake BIT_CHANGING commits found.
No remaining Unresolved Commits.
=============================== Updating Config File ===============================
Saving into UnresolvedCommits:
Saving into BaselineCommit: 17f710e467c2f0d81037dcba0a0ea12b4c51d1a8
=============================== Cleanup ===============================
Removed repo.
Removing all generated output
REMOVING: 1632cf12730e5062a99c07d6718a0ceee5d48c0a
REMOVING: 17f710e467c2f0d81037dcba0a0ea12b4c51d1a8
================== Unresolved Commit Status ==================
No remaining Unresolved Commits.
Exiting with code: 0
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