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+ python3 /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/bit_diff_clubb_bc_r8092_config
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_gfdlact.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32:

 2520 |   subroutine init_parameters_999( &
      |                                ^
Warning: ‘init_parameters_999’ defined but not used [-Wunused-function]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28:

  491 |     do i=1, dim_grid
      |                    2        
......
  498 |         if ( grid(i) < grid(i-1) ) then
      |                            1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23:

  139 |                hydromet, &                                          ! Unused
      |                       1
Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_param.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_lapack.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libmicrophys_utils.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_parabolic.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_KK_microphys.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_coamps.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62:

  633 |       do category=1, num_importance_categories
      |                                              2                
......
  638 |                rand_vect(sample) <  category_cumulative_probs(category+1) ) then
      |                                                              1
Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_bugsrad.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:327:13:

  327 |     rho_ds_zt, & ! Unused
      |             1
Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libsilhs.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_morrison.a
../src/Benchmark_cases/cloud_sed_module.F90:168:44:

  168 |        if ( zt2zm( gr, rcm, k)  > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then
      |                                            1
Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination]
../src/KK_microphys_module.F90:43:35:

   43 |   subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube,             & ! In
      |                                   1
Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_other.a
../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8:

   24 |     use clubb_precision, only: &
      |        1
Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter]
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
 Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used.
 Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F
 They must have opposite values
 Fatal error in setup_clubb_core
 Program exited normally
 Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used.
 Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F
 They must have opposite values
 Fatal error in setup_clubb_core
 Program exited normally
Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/ee117e4e991e6afcc9327cf8890439e1f90f86af.
Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/ee117e4e991e6afcc9327cf8890439e1f90f86af.
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Diffing bomex netCDF (*.nc) files
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Diffing dycoms2_rf01 netCDF (*.nc) files

There were no differences detected!
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32:

 2520 |   subroutine init_parameters_999( &
      |                                ^
Warning: ‘init_parameters_999’ defined but not used [-Wunused-function]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23:

  139 |                hydromet, &                                          ! Unused
      |                       1
Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:327:13:

  327 |     rho_ds_zt, & ! Unused
      |             1
Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument]
../src/KK_microphys_module.F90:43:35:

   43 |   subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube,             & ! In
      |                                   1
Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument]
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
 Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used.
 Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F
 They must have opposite values
 Fatal error in setup_clubb_core
 Program exited normally
 Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used.
 Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F
 They must have opposite values
 Fatal error in setup_clubb_core
 Program exited normally
Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/6dff441959e8cdb1eb5c52576309eb27f4f619c1.
Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/ee117e4e991e6afcc9327cf8890439e1f90f86af.
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Diffing bomex netCDF (*.nc) files
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Traceback (most recent call last):
  File "diff_netcdf_outputs.py", line 5, in <module>
    import netCDF4
ImportError: No module named netCDF4
Diffing dycoms2_rf01 netCDF (*.nc) files

There were no differences detected!

=============================== Configuring Test ===============================


Working directory set to: .
Trying to clone repo...

Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo

Output Save Mode: none

Using branch: master

Commits to test vs the baseline (ee117e4e991e6afcc9327cf8890439e1f90f86af)
	6dff441959e8cdb1eb5c52576309eb27f4f619c1

Making list from 'UnresolvedCommits':

Run Output Path: repo/output

Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\ncp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm.bash bomex', '\nrepo/run_scripts/run_scm.bash dycoms2_rf01']

Diffing command: repo/run_scripts/run_bindiff_all.bash

=============================== Running Test ===============================

Parsing message from commit: 6dff441959e8cdb1eb5c52576309eb27f4f619c1
	Found: BIT_CHANGING

Checking Commit: 6dff441959e8cdb1eb5c52576309eb27f4f619c1
	Checking out ee117e4e991e6afcc9327cf8890439e1f90f86af
	Running: 'repo/compile/compile.bash'
	Running: '
rm -rf repo/output'
	Running: 'mkdir repo/output'
	Running: '
cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters'
	Running: '
cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters'
	Running: '
cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters'
	Running: '
repo/run_scripts/run_scm.bash bomex'
	Running: '
repo/run_scripts/run_scm.bash dycoms2_rf01'
	Output from ee117e4e991e6afcc9327cf8890439e1f90f86af already saved
	Diffing: 'repo/run_scripts/run_bindiff_all.bash ee117e4e991e6afcc9327cf8890439e1f90f86af ee117e4e991e6afcc9327cf8890439e1f90f86af'
	Checking out 6dff441959e8cdb1eb5c52576309eb27f4f619c1
	Running: 'repo/compile/compile.bash'
	Running: '
rm -rf repo/output'
	Running: 'mkdir repo/output'
	Running: '
cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters'
	Running: '
cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters'
	Running: '
cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters'
	Running: '
repo/run_scripts/run_scm.bash bomex'
	Running: '
repo/run_scripts/run_scm.bash dycoms2_rf01'
	Output from ee117e4e991e6afcc9327cf8890439e1f90f86af already saved
	Diffing: 'repo/run_scripts/run_bindiff_all.bash 6dff441959e8cdb1eb5c52576309eb27f4f619c1 ee117e4e991e6afcc9327cf8890439e1f90f86af'
	WARNING: commit '6dff441959e8cdb1eb5c52576309eb27f4f619c1' was supposed to be BIT_CHANGING, but is not.

=============================== Test Results ===============================

Commit Range Checked = ee117e4e991e6afcc9327cf8890439e1f90f86af...6dff441959e8cdb1eb5c52576309eb27f4f619c1

No new Unresolved commits found.

Fake BIT_CHANGING Commits:
	6dff441959e8cdb1eb5c52576309eb27f4f619c1

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: 6dff441959e8cdb1eb5c52576309eb27f4f619c1

=============================== Cleanup ===============================

Removed repo.

Removing all generated output
	REMOVING: ee117e4e991e6afcc9327cf8890439e1f90f86af
	REMOVING: 6dff441959e8cdb1eb5c52576309eb27f4f619c1

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0