Started by user Gunther Huebler Obtained jenkins_tests/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision ee117e4e991e6afcc9327cf8890439e1f90f86af (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f ee117e4e991e6afcc9327cf8890439e1f90f86af # timeout=10 Commit message: "Adding script that checks if two nc files contain different output fields, rather than just checking bit-for-bitness between the two. Also making our run_bin_diff script use this new nc comparator instead of linux diff." > git rev-list --no-walk e000e918d50566e48e2e35d43e7c7ad76a0e38cd # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/bit_diff_clubb_bc_r8092_config ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32: 2520 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_KK_microphys.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_coamps.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_bugsrad.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:327:13: 327 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_morrison.a ../src/Benchmark_cases/cloud_sed_module.F90:168:44: 168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_other.a ../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8: 24 | use clubb_precision, only: & | 1 Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/8072476e7423607a78acd991f13442ceb4bcd521. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/1cda981a58d39a171f155a4987cec616db96d36b. Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files There were no differences detected! ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32: 2520 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:327:13: 327 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/31351cc3d78ba5f7fc722628e1f23889bd55ef14. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/8072476e7423607a78acd991f13442ceb4bcd521. Diffing bomex netCDF (*.nc) files *** Differences detected in bomex_zt.nc! *** *** Differences detected in bomex_zm.nc! *** *** Differences detected in bomex_sfc.nc! *** Diffing dycoms2_rf01 netCDF (*.nc) files *** Differences detected in dycoms2_rf01_zt.nc! *** *** Differences detected in dycoms2_rf01_zm.nc! *** *** Differences detected in dycoms2_rf01_sfc.nc! *** There were some differences detected! There were differences detected in netCDF (*.nc) files. ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/067d5ca5d065d2f62e06ea713ac73125ba692eaf. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/31351cc3d78ba5f7fc722628e1f23889bd55ef14. Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files There were no differences detected! ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32: 2520 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:327:13: 327 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/3f4e66923a460e96c51d1473153aba6ce1c9c78a. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/067d5ca5d065d2f62e06ea713ac73125ba692eaf. Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files There were no differences detected! Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/3f4e66923a460e96c51d1473153aba6ce1c9c78a. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/31351cc3d78ba5f7fc722628e1f23889bd55ef14. Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files There were no differences detected! ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/108f6ea2c8b3d9357cf551b11a85a2d9a4becc47. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/3f4e66923a460e96c51d1473153aba6ce1c9c78a. Diffing bomex netCDF (*.nc) files *** Differences detected in bomex_zm.nc! *** Diffing dycoms2_rf01 netCDF (*.nc) files *** Differences detected in dycoms2_rf01_zm.nc! *** There were some differences detected! There were differences detected in netCDF (*.nc) files. ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. =============================== Configuring Test =============================== Working directory set to: . Trying to clone repo... Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo Output Save Mode: none Using branch: master Commits to test vs the baseline (1cda981a58d39a171f155a4987cec616db96d36b) 8072476e7423607a78acd991f13442ceb4bcd521 31351cc3d78ba5f7fc722628e1f23889bd55ef14 bcb29622c6699771d244bab3345a7e7ea70ea323 067d5ca5d065d2f62e06ea713ac73125ba692eaf 3f4e66923a460e96c51d1473153aba6ce1c9c78a 108f6ea2c8b3d9357cf551b11a85a2d9a4becc47 e000e918d50566e48e2e35d43e7c7ad76a0e38cd ee117e4e991e6afcc9327cf8890439e1f90f86af Making list from 'UnresolvedCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\ncp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm.bash bomex', '\nrepo/run_scripts/run_scm.bash dycoms2_rf01'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: 8072476e7423607a78acd991f13442ceb4bcd521 Parsing message from commit: 31351cc3d78ba5f7fc722628e1f23889bd55ef14 Found: BIT_CHANGING Parsing message from commit: bcb29622c6699771d244bab3345a7e7ea70ea323 Parsing message from commit: 067d5ca5d065d2f62e06ea713ac73125ba692eaf Parsing message from commit: 3f4e66923a460e96c51d1473153aba6ce1c9c78a Found: BIT_CHANGING Parsing message from commit: 108f6ea2c8b3d9357cf551b11a85a2d9a4becc47 Parsing message from commit: e000e918d50566e48e2e35d43e7c7ad76a0e38cd Found: BIT_CHANGING:108f6ea2c8b3d9357cf551b11a85a2d9a4becc47 Parsing message from commit: ee117e4e991e6afcc9327cf8890439e1f90f86af Checking Commit: 8072476e7423607a78acd991f13442ceb4bcd521 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 31351cc3d78ba5f7fc722628e1f23889bd55ef14 Checking out 8072476e7423607a78acd991f13442ceb4bcd521 Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm.bash bomex' Running: ' repo/run_scripts/run_scm.bash dycoms2_rf01' Checking out 1cda981a58d39a171f155a4987cec616db96d36b Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm.bash bomex' Running: ' repo/run_scripts/run_scm.bash dycoms2_rf01' Diffing: 'repo/run_scripts/run_bindiff_all.bash 8072476e7423607a78acd991f13442ceb4bcd521 1cda981a58d39a171f155a4987cec616db96d36b' Checking out 31351cc3d78ba5f7fc722628e1f23889bd55ef14 Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm.bash bomex' Running: ' repo/run_scripts/run_scm.bash dycoms2_rf01' Output from 8072476e7423607a78acd991f13442ceb4bcd521 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 31351cc3d78ba5f7fc722628e1f23889bd55ef14 8072476e7423607a78acd991f13442ceb4bcd521' Commit '31351cc3d78ba5f7fc722628e1f23889bd55ef14' is BIT_CHANGING and properly labelled as such. Checking Commit: bcb29622c6699771d244bab3345a7e7ea70ea323 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 067d5ca5d065d2f62e06ea713ac73125ba692eaf Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 3f4e66923a460e96c51d1473153aba6ce1c9c78a Checking out 067d5ca5d065d2f62e06ea713ac73125ba692eaf Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm.bash bomex' Running: ' repo/run_scripts/run_scm.bash dycoms2_rf01' Output from 31351cc3d78ba5f7fc722628e1f23889bd55ef14 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 067d5ca5d065d2f62e06ea713ac73125ba692eaf 31351cc3d78ba5f7fc722628e1f23889bd55ef14' Checking out 3f4e66923a460e96c51d1473153aba6ce1c9c78a Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm.bash bomex' Running: ' repo/run_scripts/run_scm.bash dycoms2_rf01' Output from 067d5ca5d065d2f62e06ea713ac73125ba692eaf already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 3f4e66923a460e96c51d1473153aba6ce1c9c78a 067d5ca5d065d2f62e06ea713ac73125ba692eaf' [33m WARNING: commit '3f4e66923a460e96c51d1473153aba6ce1c9c78a' was supposed to be BIT_CHANGING, but is not.[0m Checking Commit: 108f6ea2c8b3d9357cf551b11a85a2d9a4becc47 Output from 3f4e66923a460e96c51d1473153aba6ce1c9c78a already saved Output from 31351cc3d78ba5f7fc722628e1f23889bd55ef14 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 3f4e66923a460e96c51d1473153aba6ce1c9c78a 31351cc3d78ba5f7fc722628e1f23889bd55ef14' Checking out 108f6ea2c8b3d9357cf551b11a85a2d9a4becc47 Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm.bash bomex' Running: ' repo/run_scripts/run_scm.bash dycoms2_rf01' Output from 3f4e66923a460e96c51d1473153aba6ce1c9c78a already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 108f6ea2c8b3d9357cf551b11a85a2d9a4becc47 3f4e66923a460e96c51d1473153aba6ce1c9c78a' Commit '108f6ea2c8b3d9357cf551b11a85a2d9a4becc47' is BIT_CHANGING and properly labelled as such. Checking Commit: e000e918d50566e48e2e35d43e7c7ad76a0e38cd Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: ee117e4e991e6afcc9327cf8890439e1f90f86af Running: final commit to check, not labelled BIT_CHANGING Checking out ee117e4e991e6afcc9327cf8890439e1f90f86af Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used. Invalid configuration: l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F They must have opposite values Fatal error in setup_clubb_core Program exited normally Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/ee117e4e991e6afcc9327cf8890439e1f90f86af. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/108f6ea2c8b3d9357cf551b11a85a2d9a4becc47. Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing bomex netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing dycoms2_rf01 netCDF (*.nc) files There were no differences detected! Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm.bash bomex' Running: ' repo/run_scripts/run_scm.bash dycoms2_rf01' Output from 108f6ea2c8b3d9357cf551b11a85a2d9a4becc47 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash ee117e4e991e6afcc9327cf8890439e1f90f86af 108f6ea2c8b3d9357cf551b11a85a2d9a4becc47' =============================== Test Results =============================== Commit Range Checked = 1cda981a58d39a171f155a4987cec616db96d36b...ee117e4e991e6afcc9327cf8890439e1f90f86af No new Unresolved commits found. Fake BIT_CHANGING Commits: 3f4e66923a460e96c51d1473153aba6ce1c9c78a No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: ee117e4e991e6afcc9327cf8890439e1f90f86af =============================== Cleanup =============================== Removed repo. Removing all generated output REMOVING: 1cda981a58d39a171f155a4987cec616db96d36b REMOVING: 8072476e7423607a78acd991f13442ceb4bcd521 REMOVING: 31351cc3d78ba5f7fc722628e1f23889bd55ef14 REMOVING: 067d5ca5d065d2f62e06ea713ac73125ba692eaf REMOVING: 3f4e66923a460e96c51d1473153aba6ce1c9c78a REMOVING: 108f6ea2c8b3d9357cf551b11a85a2d9a4becc47 REMOVING: ee117e4e991e6afcc9327cf8890439e1f90f86af ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS