Started by an SCM change Obtained jenkins_tests/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d # timeout=10 Commit message: "Making api version of setup_grid. larson-group/clubb#972" > git rev-list --no-walk 1460a662e1f4056e02af076d44a22b1e5629c987 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/bit_diff_clubb_bc_r8092_config ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32: 2520 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_bugsrad.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_coamps.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_KK_microphys.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:323:13: 323 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_morrison.a ../src/Benchmark_cases/cloud_sed_module.F90:168:44: 168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_other.a ../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8: 24 | use clubb_precision, only: & | 1 Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/1460a662e1f4056e02af076d44a22b1e5629c987. No data was found! Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/1460a662e1f4056e02af076d44a22b1e5629c987. No data was found! =============================== Configuring Test =============================== Working directory set to: . Trying to clone repo... Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo Output Save Mode: none Using branch: master Commits to test vs the baseline (1460a662e1f4056e02af076d44a22b1e5629c987) efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d Making list from 'UnresolvedCommits': - fa5559b6fd09f3da30b4d4d0255c532b3dd53607 - ea5b5707470c2d942cbb7081436ede1baedde704 - 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 - f983171d892eb60a4d3193f71125f280169a336f - c665567bd02143fd2060282ad5cb5dea6cdf2679 - 74c54289ac37740b48512eecab9352c37a19a324 - 517dd59a53c72aab76b5f40e078f08c7a736f0a9 - 9cc76af14581bda65bf71ce4d8ba4d70534cf6f5 - 722d0f5d58787f4c8f9ad9c73a1004e1077c61db - 2a9a0f2c7031013529a4c2a7b78d05c727bdc37c - ae798c431a9c33366661af3078b56d073b16b023 - 8c4c90049b075b8e615e8e08ddf101bdcddf9856 - 1460a662e1f4056e02af076d44a22b1e5629c987 Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\ncp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d Checking Commit: efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d Running: final commit to check, not labelled BIT_CHANGING Checking out efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm_all.bash --min-cases' Checking out 1460a662e1f4056e02af076d44a22b1e5629c987 Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm_all.bash --min-cases' Diffing: 'repo/run_scripts/run_bindiff_all.bash efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d 1460a662e1f4056e02af076d44a22b1e5629c987' [31m ISSUE WITH COMMIT DETECTED: efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d differs from 1460a662e1f4056e02af076d44a22b1e5629c987[0m Finding all BIT_CHANGING commits in range: 1460a662e1f4056e02af076d44a22b1e5629c987...efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d Output from efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d already saved Output from 1460a662e1f4056e02af076d44a22b1e5629c987 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d 1460a662e1f4056e02af076d44a22b1e5629c987' Found: efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d =============================== Test Results =============================== Commit Range Checked = 1460a662e1f4056e02af076d44a22b1e5629c987...efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d New Unresolved Commits: efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): fa5559b6fd09f3da30b4d4d0255c532b3dd53607 ea5b5707470c2d942cbb7081436ede1baedde704 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 f983171d892eb60a4d3193f71125f280169a336f c665567bd02143fd2060282ad5cb5dea6cdf2679 74c54289ac37740b48512eecab9352c37a19a324 517dd59a53c72aab76b5f40e078f08c7a736f0a9 9cc76af14581bda65bf71ce4d8ba4d70534cf6f5 722d0f5d58787f4c8f9ad9c73a1004e1077c61db 2a9a0f2c7031013529a4c2a7b78d05c727bdc37c ae798c431a9c33366661af3078b56d073b16b023 8c4c90049b075b8e615e8e08ddf101bdcddf9856 1460a662e1f4056e02af076d44a22b1e5629c987 efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d =============================== Updating Config File =============================== Saving into UnresolvedCommits: fa5559b6fd09f3da30b4d4d0255c532b3dd53607 ea5b5707470c2d942cbb7081436ede1baedde704 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 f983171d892eb60a4d3193f71125f280169a336f c665567bd02143fd2060282ad5cb5dea6cdf2679 74c54289ac37740b48512eecab9352c37a19a324 517dd59a53c72aab76b5f40e078f08c7a736f0a9 9cc76af14581bda65bf71ce4d8ba4d70534cf6f5 722d0f5d58787f4c8f9ad9c73a1004e1077c61db 2a9a0f2c7031013529a4c2a7b78d05c727bdc37c ae798c431a9c33366661af3078b56d073b16b023 8c4c90049b075b8e615e8e08ddf101bdcddf9856 1460a662e1f4056e02af076d44a22b1e5629c987 efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d Saving into BaselineCommit: efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d =============================== Cleanup =============================== Removed repo. Removing all generated output REMOVING: 1460a662e1f4056e02af076d44a22b1e5629c987 REMOVING: efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): fa5559b6fd09f3da30b4d4d0255c532b3dd53607 ea5b5707470c2d942cbb7081436ede1baedde704 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 f983171d892eb60a4d3193f71125f280169a336f c665567bd02143fd2060282ad5cb5dea6cdf2679 74c54289ac37740b48512eecab9352c37a19a324 517dd59a53c72aab76b5f40e078f08c7a736f0a9 9cc76af14581bda65bf71ce4d8ba4d70534cf6f5 722d0f5d58787f4c8f9ad9c73a1004e1077c61db 2a9a0f2c7031013529a4c2a7b78d05c727bdc37c ae798c431a9c33366661af3078b56d073b16b023 8c4c90049b075b8e615e8e08ddf101bdcddf9856 1460a662e1f4056e02af076d44a22b1e5629c987 efea5cc92bbc5ac9bca31f66f10f02f7f56eff8d Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE