+ python3 /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/bit_diff_clubb_bc_r8092_config
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_gfdlact.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2518:32:
2518 | subroutine init_parameters_999( &
| ^
Warning: ‘init_parameters_999’ defined but not used [-Wunused-function]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28:
491 | do i=1, dim_grid
| 2
......
498 | if ( grid(i) < grid(i-1) ) then
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23:
132 | hydromet, & ! Unused
| 1
Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_param.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_lapack.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libmicrophys_utils.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_parabolic.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_KK_microphys.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62:
633 | do category=1, num_importance_categories
| 2
......
638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then
| 1
Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_coamps.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_bugsrad.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:323:13:
323 | rho_ds_zt, & ! Unused
| 1
Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libsilhs.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_morrison.a
../src/Benchmark_cases/cloud_sed_module.F90:168:44:
168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then
| 1
Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination]
../src/KK_microphys_module.F90:43:35:
43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In
| 1
Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_other.a
../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8:
24 | use clubb_precision, only: &
| 1
Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter]
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
=============================== Configuring Test ===============================
Working directory set to: .
Trying to clone repo...
Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo
Output Save Mode: last
Using branch: master
Commits to test vs the baseline (9f1e1ad0e80be0a00148ceb1373cd3dd82e9469a)
987d63de489d2baa09ad6e1538b2c6dbb7551690
79bc651171add5b6a340be02cf6f775ddc779aaa
edb7bc84684712739876ec803541ba3b165f4a5a
17d242a65d579c70299dfcecb853f2aed5e0feb1
a29c355bfc54d7459a6107cf45b593473dcce8d1
9638a7486c38e3dbd7403422b6dc5a9d5bdf7d46
3c47dcdc6b5d8ecb855c2df36a86e3e778e4820d
cf9db3f9448ad0c5a97fcf3b005a645b6b6a927a
1b4ca12287908273f189d8588e7a39755cd4fb6d
ae681935179f62ffb588fe2aab7c95780034f153
a931651e75fe59f3c0435a3b8d1ced442a89d9cc
1c59a5018700023f704a46b68ad581445427d51f
cea625cee42c8cbf6d1793eaae65f6bb136b16f9
6aa4ad30eef8b9bc2ce8dc46fb355d414b431542
e33002f85d35ee72f9b155437f36e9c103765cc3
7a8e16c077839c803937a1346546fd5419c541a2
f7cd1d8ccc310129bfb3ceb243b0c47284eaccf5
202f78110b0f343f565b8ac1ea633ded7b27ee11
df3b263c7525b030ed469116534560eb74ae8ddf
335d83b7e89d00fa3cd1ce727356d6d7b006dd36
Making list from 'UnresolvedCommits':
Run Output Path: repo/output
Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\ncp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm_all.bash --min-cases']
Diffing command: repo/run_scripts/run_bindiff_all.bash
=============================== Running Test ===============================
Parsing message from commit: 987d63de489d2baa09ad6e1538b2c6dbb7551690
Parsing message from commit: 79bc651171add5b6a340be02cf6f775ddc779aaa
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Parsing message from commit: df3b263c7525b030ed469116534560eb74ae8ddf
Parsing message from commit: 335d83b7e89d00fa3cd1ce727356d6d7b006dd36
Checking Commit: 987d63de489d2baa09ad6e1538b2c6dbb7551690
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 79bc651171add5b6a340be02cf6f775ddc779aaa
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Checking Commit: 335d83b7e89d00fa3cd1ce727356d6d7b006dd36
Running: final commit to check, not labelled BIT_CHANGING
Checking out 335d83b7e89d00fa3cd1ce727356d6d7b006dd36
Running: 'repo/compile/compile.bash'
Running: '
rm -rf repo/output'
Running: 'mkdir repo/output'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters'
Running: '
repo/run_scripts/run_scm_all.bash --min-cases'
Checking out 9f1e1ad0e80be0a00148ceb1373cd3dd82e9469a
Traceback (most recent call last):
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py", line 55, in <module>
main()
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py", line 43, in main
exit_code = test.run_test()
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 328, in run_test
problem_commits, fake_bc_commits = self.find_problem_commits(bit_changing_commits)
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 451, in find_problem_commits
if self.diff(commit, last_bc_commit):
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 635, in diff
save_path_2 = self.run_and_save_output(commit2)
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 581, in run_and_save_output
self.repo.git.checkout(commit)
File "/usr/local/lib/python3.6/site-packages/git/cmd.py", line 585, in <lambda>
return lambda *args, **kwargs: self._call_process(name, *args, **kwargs)
File "/usr/local/lib/python3.6/site-packages/git/cmd.py", line 1124, in _call_process
return self.execute(call, **exec_kwargs)
File "/usr/local/lib/python3.6/site-packages/git/cmd.py", line 928, in execute
raise GitCommandError(redacted_command, status, stderr_value, stdout_value)
git.exc.GitCommandError: Cmd('git') failed due to: exit code(1)
cmdline: git checkout 9f1e1ad0e80be0a00148ceb1373cd3dd82e9469a
stderr: 'error: Your local changes to the following files would be overwritten by checkout:
input/tunable_parameters/configurable_model_flags.in
Please, commit your changes or stash them before you can switch branches.
Aborting'
