+ python3 /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/bit_diff_clubb_bc_r8092_config
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_gfdlact.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28:
491 | do i=1, dim_grid
| 2
......
498 | if ( grid(i) < grid(i-1) ) then
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2518:32:
2518 | subroutine init_parameters_999( &
| ^
Warning: ‘init_parameters_999’ defined but not used [-Wunused-function]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23:
132 | hydromet, & ! Unused
| 1
Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_param.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_lapack.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libmicrophys_utils.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_parabolic.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_KK_microphys.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_coamps.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62:
633 | do category=1, num_importance_categories
| 2
......
638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then
| 1
Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_bugsrad.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:323:13:
323 | rho_ds_zt, & ! Unused
| 1
Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libsilhs.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_morrison.a
../src/Benchmark_cases/cloud_sed_module.F90:168:44:
168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then
| 1
Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination]
../src/KK_microphys_module.F90:43:35:
43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In
| 1
Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_other.a
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
=============================== Configuring Test ===============================
Working directory set to: .
Trying to clone repo...
Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo
Output Save Mode: last
Using branch: master
Commits to test vs the baseline (9f1e1ad0e80be0a00148ceb1373cd3dd82e9469a)
987d63de489d2baa09ad6e1538b2c6dbb7551690
79bc651171add5b6a340be02cf6f775ddc779aaa
edb7bc84684712739876ec803541ba3b165f4a5a
17d242a65d579c70299dfcecb853f2aed5e0feb1
a29c355bfc54d7459a6107cf45b593473dcce8d1
9638a7486c38e3dbd7403422b6dc5a9d5bdf7d46
3c47dcdc6b5d8ecb855c2df36a86e3e778e4820d
cf9db3f9448ad0c5a97fcf3b005a645b6b6a927a
1b4ca12287908273f189d8588e7a39755cd4fb6d
ae681935179f62ffb588fe2aab7c95780034f153
a931651e75fe59f3c0435a3b8d1ced442a89d9cc
Making list from 'UnresolvedCommits':
Run Output Path: repo/output
Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\ncp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm_all.bash --min-cases']
Diffing command: repo/run_scripts/run_bindiff_all.bash
=============================== Running Test ===============================
Parsing message from commit: 987d63de489d2baa09ad6e1538b2c6dbb7551690
Parsing message from commit: 79bc651171add5b6a340be02cf6f775ddc779aaa
Parsing message from commit: edb7bc84684712739876ec803541ba3b165f4a5a
Parsing message from commit: 17d242a65d579c70299dfcecb853f2aed5e0feb1
Parsing message from commit: a29c355bfc54d7459a6107cf45b593473dcce8d1
Parsing message from commit: 9638a7486c38e3dbd7403422b6dc5a9d5bdf7d46
Parsing message from commit: 3c47dcdc6b5d8ecb855c2df36a86e3e778e4820d
Parsing message from commit: cf9db3f9448ad0c5a97fcf3b005a645b6b6a927a
Parsing message from commit: 1b4ca12287908273f189d8588e7a39755cd4fb6d
Parsing message from commit: ae681935179f62ffb588fe2aab7c95780034f153
Parsing message from commit: a931651e75fe59f3c0435a3b8d1ced442a89d9cc
Checking Commit: 987d63de489d2baa09ad6e1538b2c6dbb7551690
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 79bc651171add5b6a340be02cf6f775ddc779aaa
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: edb7bc84684712739876ec803541ba3b165f4a5a
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 17d242a65d579c70299dfcecb853f2aed5e0feb1
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: a29c355bfc54d7459a6107cf45b593473dcce8d1
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 9638a7486c38e3dbd7403422b6dc5a9d5bdf7d46
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 3c47dcdc6b5d8ecb855c2df36a86e3e778e4820d
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: cf9db3f9448ad0c5a97fcf3b005a645b6b6a927a
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 1b4ca12287908273f189d8588e7a39755cd4fb6d
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: ae681935179f62ffb588fe2aab7c95780034f153
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: a931651e75fe59f3c0435a3b8d1ced442a89d9cc
Running: final commit to check, not labelled BIT_CHANGING
Checking out a931651e75fe59f3c0435a3b8d1ced442a89d9cc
Running: 'repo/compile/compile.bash'
Running: '
rm -rf repo/output'
Running: 'mkdir repo/output'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters'
Running: '
repo/run_scripts/run_scm_all.bash --min-cases'
Checking out 9f1e1ad0e80be0a00148ceb1373cd3dd82e9469a
Traceback (most recent call last):
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py", line 55, in <module>
main()
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py", line 43, in main
exit_code = test.run_test()
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 328, in run_test
problem_commits, fake_bc_commits = self.find_problem_commits(bit_changing_commits)
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 451, in find_problem_commits
if self.diff(commit, last_bc_commit):
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 635, in diff
save_path_2 = self.run_and_save_output(commit2)
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 581, in run_and_save_output
self.repo.git.checkout(commit)
File "/usr/local/lib/python3.6/site-packages/git/cmd.py", line 585, in <lambda>
return lambda *args, **kwargs: self._call_process(name, *args, **kwargs)
File "/usr/local/lib/python3.6/site-packages/git/cmd.py", line 1124, in _call_process
return self.execute(call, **exec_kwargs)
File "/usr/local/lib/python3.6/site-packages/git/cmd.py", line 928, in execute
raise GitCommandError(redacted_command, status, stderr_value, stdout_value)
git.exc.GitCommandError: Cmd('git') failed due to: exit code(1)
cmdline: git checkout 9f1e1ad0e80be0a00148ceb1373cd3dd82e9469a
stderr: 'error: Your local changes to the following files would be overwritten by checkout:
input/tunable_parameters/configurable_model_flags.in
Please, commit your changes or stash them before you can switch branches.
Aborting'
