+ python3 /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/bit_diff_clubb_bc_r8092_config
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_gfdlact.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28:
491 | do i=1, dim_grid
| 2
......
498 | if ( grid(i) < grid(i-1) ) then
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2535:32:
2535 | subroutine init_parameters_999( )
| ^
Warning: ‘init_parameters_999’ defined but not used [-Wunused-function]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23:
132 | hydromet, & ! Unused
| 1
Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_param.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_lapack.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libmicrophys_utils.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_parabolic.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_KK_microphys.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_coamps.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_bugsrad.a
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62:
633 | do category=1, num_importance_categories
| 2
......
638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then
| 1
Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:315:13:
315 | rho_ds_zt, & ! Unused
| 1
Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_morrison.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libsilhs.a
../src/Benchmark_cases/cloud_sed_module.F90:168:44:
168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then
| 1
Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination]
../src/KK_microphys_module.F90:43:35:
43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In
| 1
Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_other.a
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
=============================== Configuring Test ===============================
Working directory set to: .
Trying to clone repo...
Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo
Output Save Mode: last
Using branch: master
Commits to test vs the baseline (9f1e1ad0e80be0a00148ceb1373cd3dd82e9469a)
987d63de489d2baa09ad6e1538b2c6dbb7551690
79bc651171add5b6a340be02cf6f775ddc779aaa
Making list from 'UnresolvedCommits':
Run Output Path: repo/output
Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\ncp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm_all.bash --min-cases']
Diffing command: repo/run_scripts/run_bindiff_all.bash
=============================== Running Test ===============================
Parsing message from commit: 987d63de489d2baa09ad6e1538b2c6dbb7551690
Parsing message from commit: 79bc651171add5b6a340be02cf6f775ddc779aaa
Checking Commit: 987d63de489d2baa09ad6e1538b2c6dbb7551690
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 79bc651171add5b6a340be02cf6f775ddc779aaa
Running: final commit to check, not labelled BIT_CHANGING
Checking out 79bc651171add5b6a340be02cf6f775ddc779aaa
Running: 'repo/compile/compile.bash'
Running: '
rm -rf repo/output'
Running: 'mkdir repo/output'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters'
Running: '
cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters'
Running: '
repo/run_scripts/run_scm_all.bash --min-cases'
Checking out 9f1e1ad0e80be0a00148ceb1373cd3dd82e9469a
Traceback (most recent call last):
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py", line 55, in <module>
main()
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py", line 43, in main
exit_code = test.run_test()
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 328, in run_test
problem_commits, fake_bc_commits = self.find_problem_commits(bit_changing_commits)
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 451, in find_problem_commits
if self.diff(commit, last_bc_commit):
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 635, in diff
save_path_2 = self.run_and_save_output(commit2)
File "/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 581, in run_and_save_output
self.repo.git.checkout(commit)
File "/usr/local/lib/python3.6/site-packages/git/cmd.py", line 585, in <lambda>
return lambda *args, **kwargs: self._call_process(name, *args, **kwargs)
File "/usr/local/lib/python3.6/site-packages/git/cmd.py", line 1124, in _call_process
return self.execute(call, **exec_kwargs)
File "/usr/local/lib/python3.6/site-packages/git/cmd.py", line 928, in execute
raise GitCommandError(redacted_command, status, stderr_value, stdout_value)
git.exc.GitCommandError: Cmd('git') failed due to: exit code(1)
cmdline: git checkout 9f1e1ad0e80be0a00148ceb1373cd3dd82e9469a
stderr: 'error: Your local changes to the following files would be overwritten by checkout:
input/tunable_parameters/configurable_model_flags.in
Please, commit your changes or stash them before you can switch branches.
Aborting'
