Started by an SCM change Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on mitch in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 34c6bb07afb6e445f60ea87dcc632969086f9fa1 (refs/remotes/origin/master) Commit message: "advance_clubb_core cleanup (#1301)" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 34c6bb07afb6e445f60ea87dcc632969086f9fa1 # timeout=10 > git rev-list --no-walk 2fe6e56761356da5b20a7fba14c72ec69fdc9d02 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] lock Trying to acquire lock on [Resource: GPU_mitch] The resource [GPU_mitch] is locked by build clubb_nvhpc_gpu_column_mirror_test #127 #127 since May 14, 2026, 3:07 AM. [Resource: GPU_mitch] is not free, waiting for execution ... [Required resources: [GPU_mitch]] added into queue at position 0 Lock acquired on [Resource: GPU_mitch] [Pipeline] { [Pipeline] sh + ulimit -s 8388608 + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config CMake Warning: Manually-specified variables were not used by the project: NetCDF_C_INCLUDE_DIR NetCDF_C_LIBRARY NetCDF_Fortran_INCLUDE_DIR NetCDF_Fortran_LIBRARY Directory 1 is 34c6bb07afb6e445f60ea87dcc632969086f9fa1 Directory 2 is 2fe6e56761356da5b20a7fba14c72ec69fdc9d02 Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs'] ================================================ arm ================================================ >The linux diff detected differences in arm_stats.nc< >>Differences above threshold were detected in the common fields in file arm_stats.nc<< >>>Differences in common variables detected for case arm<<< ===================================================================================================== ================================================ cobra ================================================ >The linux diff detected differences in cobra_stats.nc< >>Differences above threshold were detected in the common fields in file cobra_stats.nc<< >>>Differences in common variables detected for case cobra<<< ===================================================================================================== ================================================ gabls3 ================================================ >The linux diff detected differences in gabls3_stats.nc< >>Differences above threshold were detected in the common fields in file gabls3_stats.nc<< >>>Differences in common variables detected for case gabls3<<< ===================================================================================================== ================================================ mpace_b ================================================ >The linux diff detected differences in mpace_b_stats.nc< >>Differences above threshold were detected in the common fields in file mpace_b_stats.nc<< >>>Differences in common variables detected for case mpace_b<<< ===================================================================================================== ================================================ rico_silhs ================================================ >The linux diff detected differences in rico_silhs_stats.nc< >>Differences above threshold were detected in the common fields in file rico_silhs_stats.nc<< >>>Differences in common variables detected for case rico_silhs<<< ===================================================================================================== SUMMARY: There were differences detected in the common variables in netCDF (*.nc) files. Pass: 0 cases [] Fail: 5 cases ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs'] Directory 1 is 34c6bb07afb6e445f60ea87dcc632969086f9fa1 Directory 2 is 2fe6e56761356da5b20a7fba14c72ec69fdc9d02 Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs'] ================================================ arm ================================================ >The linux diff detected differences in arm_stats.nc< >>Differences above threshold were detected in the common fields in file arm_stats.nc<< >>>Differences in common variables detected for case arm<<< ===================================================================================================== ================================================ cobra ================================================ >The linux diff detected differences in cobra_stats.nc< >>Differences above threshold were detected in the common fields in file cobra_stats.nc<< >>>Differences in common variables detected for case cobra<<< ===================================================================================================== ================================================ gabls3 ================================================ >The linux diff detected differences in gabls3_stats.nc< >>Differences above threshold were detected in the common fields in file gabls3_stats.nc<< >>>Differences in common variables detected for case gabls3<<< ===================================================================================================== ================================================ mpace_b ================================================ >The linux diff detected differences in mpace_b_stats.nc< >>Differences above threshold were detected in the common fields in file mpace_b_stats.nc<< >>>Differences in common variables detected for case mpace_b<<< ===================================================================================================== ================================================ rico_silhs ================================================ >The linux diff detected differences in rico_silhs_stats.nc< >>Differences above threshold were detected in the common fields in file rico_silhs_stats.nc<< >>>Differences in common variables detected for case rico_silhs<<< ===================================================================================================== SUMMARY: There were differences detected in the common variables in netCDF (*.nc) files. Pass: 0 cases [] Fail: 5 cases ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs'] =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git Output Save Mode: all Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -gpu openacc -debug', '\nrm -rf output', '\nmkdir output', "\nsed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", '\npython run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3'] Diffing command: run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: 34c6bb07afb6e445f60ea87dcc632969086f9fa1 Checking Commit: 34c6bb07afb6e445f60ea87dcc632969086f9fa1 Running: final commit to check, not labelled BIT_CHANGING Checking out 34c6bb07afb6e445f60ea87dcc632969086f9fa1 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3' Checking out 2fe6e56761356da5b20a7fba14c72ec69fdc9d02 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3' Diffing: 'run_scripts/run_bindiff_all.py 34c6bb07afb6e445f60ea87dcc632969086f9fa1 2fe6e56761356da5b20a7fba14c72ec69fdc9d02' ISSUE WITH COMMIT DETECTED: 34c6bb07afb6e445f60ea87dcc632969086f9fa1 differs from 2fe6e56761356da5b20a7fba14c72ec69fdc9d02 Finding all BIT_CHANGING commits in range: 2fe6e56761356da5b20a7fba14c72ec69fdc9d02...34c6bb07afb6e445f60ea87dcc632969086f9fa1 Output from 34c6bb07afb6e445f60ea87dcc632969086f9fa1 already saved Output from 2fe6e56761356da5b20a7fba14c72ec69fdc9d02 already saved Diffing: 'run_scripts/run_bindiff_all.py 34c6bb07afb6e445f60ea87dcc632969086f9fa1 2fe6e56761356da5b20a7fba14c72ec69fdc9d02' Found: 34c6bb07afb6e445f60ea87dcc632969086f9fa1 =============================== Test Results =============================== Commit Range Checked = 2fe6e56761356da5b20a7fba14c72ec69fdc9d02...34c6bb07afb6e445f60ea87dcc632969086f9fa1 New Unresolved Commits: 34c6bb07afb6e445f60ea87dcc632969086f9fa1 No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): 34c6bb07afb6e445f60ea87dcc632969086f9fa1 =============================== Updating Config File =============================== Saving into UnresolvedCommits: 34c6bb07afb6e445f60ea87dcc632969086f9fa1 Saving into BaselineCommit: 34c6bb07afb6e445f60ea87dcc632969086f9fa1 =============================== Cleanup =============================== Not removing any generated output. RENAMING 34c6bb07afb6e445f60ea87dcc632969086f9fa1 to latest_revision_validated_34c6bb07afb6e445f60ea87dcc632969086f9fa1 ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): 34c6bb07afb6e445f60ea87dcc632969086f9fa1 Exiting with code: 1 [Pipeline] } Lock released on resource [Resource: GPU_mitch] [Pipeline] // lock [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE