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+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_multi_col_BFB_nvhpc_test/config

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_multi_col_BFB_nvhpc_test
Trying to clone repo...

Cloned repo location: /home/jenkins/workspace/clubb_multi_col_BFB_nvhpc_test/repo

Output Save Mode: none

Using branch: master

Making list from 'UnresolvedCommits':

Run Output Path: repo/output

Run commands: ['repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash', '\nrm -rf repo/output', '\nmkdir repo/output', '\nrepo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in', '\nrepo/run_scripts/run_scm_all.bash --min-cases -p repo/run_scripts/clubb_params_multi_col.in']

Diffing command: repo/run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: 91fc9735c426ef0fce29ebab86c6d1c7e4638b90
	Found: BIT_CHANGING
Parsing message from commit: 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34

Checking Commit: 91fc9735c426ef0fce29ebab86c6d1c7e4638b90
	Checking out 7726602feef7f94a81bfa01ac55336701d5d2dfc
	Running: 'repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash'
	Running: '
rm -rf repo/output'
	Running: '
mkdir repo/output'
	Running: '
repo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in'
	Running: '
repo/run_scripts/run_scm_all.bash --min-cases -p repo/run_scripts/clubb_params_multi_col.in'

================== WARNING ==================
Commit:  7726602feef7f94a81bfa01ac55336701d5d2dfc

There was a problem copying the output.
Did the run complete?
Is the output path correct? repo/output

The run will continue, and this commit will be
considered unresolved.
===========================================
	Commit 7726602feef7f94a81bfa01ac55336701d5d2dfc already failed. Will not run again
	ISSUE WITH COMMIT DETECTED: 7726602feef7f94a81bfa01ac55336701d5d2dfc differs from 7726602feef7f94a81bfa01ac55336701d5d2dfc
	Checking out 91fc9735c426ef0fce29ebab86c6d1c7e4638b90
	Running: 'repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash'
	Running: '
rm -rf repo/output'
	Running: '
mkdir repo/output'
	Running: '
repo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in'
	Running: '
repo/run_scripts/run_scm_all.bash --min-cases -p repo/run_scripts/clubb_params_multi_col.in'

================== WARNING ==================
Commit:  91fc9735c426ef0fce29ebab86c6d1c7e4638b90

There was a problem copying the output.
Did the run complete?
Is the output path correct? repo/output

The run will continue, and this commit will be
considered unresolved.
===========================================
	Commit 7726602feef7f94a81bfa01ac55336701d5d2dfc already failed. Will not run again
	Commit '91fc9735c426ef0fce29ebab86c6d1c7e4638b90' is BIT_CHANGING and properly labelled as such.

Checking Commit: 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34
	Running: 'repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash'
	Running: '
rm -rf repo/output'
	Running: '
mkdir repo/output'
	Running: '
repo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in'
	Running: '
repo/run_scripts/run_scm_all.bash --min-cases -p repo/run_scripts/clubb_params_multi_col.in'

================== WARNING ==================
Commit:  4cc54e585f1e7e0a4308d1099292cddf3bcf1b34

There was a problem copying the output.
Did the run complete?
Is the output path correct? repo/output

The run will continue, and this commit will be
considered unresolved.
===========================================
	Commit 91fc9735c426ef0fce29ebab86c6d1c7e4638b90 already failed. Will not run again
	ISSUE WITH COMMIT DETECTED: 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 differs from 91fc9735c426ef0fce29ebab86c6d1c7e4638b90
Traceback (most recent call last):
  File "/usr/local/lib/python3.10/dist-packages/git/repo/fun.py", line 361, in rev_parse
    obj = to_commit(obj)
  File "/usr/local/lib/python3.10/dist-packages/git/repo/fun.py", line 208, in to_commit
    if obj.type == "tag":
AttributeError: 'NoneType' object has no attribute 'type'

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py", line 56, in <module>
    main()
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py", line 43, in main
    exit_code = test.run_test()
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 335, in run_test
    problem_commits, fake_bc_commits = self.find_problem_commits(bit_changing_commits)
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 472, in find_problem_commits
    problem_commits = problem_commits + self.find_all_bc_commits_in_range(commit_range)
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 735, in find_all_bc_commits_in_range
    commits_to_check = self.commits_in_range(commit_range[0], commit_range[1])
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 806, in commits_in_range
    commits_to_check.append(self.repo.commit(hash))
  File "/usr/local/lib/python3.10/dist-packages/git/repo/base.py", line 660, in commit
    return self.rev_parse(str(rev) + "^0")
  File "/usr/local/lib/python3.10/dist-packages/git/repo/fun.py", line 375, in rev_parse
    raise BadName(
gitdb.exc.BadName: Ref 'Invalid revision spec '^0' - not enough parent commits to reach '^0'' did not resolve to an object