Started by user Gunther Huebler Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 4aa411aa309abec014934f1589d435a83a9a4bec (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 4aa411aa309abec014934f1589d435a83a9a4bec # timeout=10 Commit message: "Bring readiopdata changes into master (#1343)" > git rev-list --no-walk 1db1e01971bca05b2e95037f97c94aae0a827a50 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] lock Trying to acquire lock on [Resource: GPU_built-in] Resource [GPU_built-in] did not exist. Created. Lock acquired on [Resource: GPU_built-in] [Pipeline] { [Pipeline] sh + ulimit -s 8388608 + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config CMake Warning: Manually-specified variables were not used by the project: NetCDF_C_INCLUDE_DIR NetCDF_C_LIBRARY NetCDF_Fortran_INCLUDE_DIR NetCDF_Fortran_LIBRARY /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?) /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?) /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?) /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?) /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?) Directory 1 is 4aa411aa309abec014934f1589d435a83a9a4bec Directory 2 is e0ffe41f4e282a8f1686d43a2d7c881327408fe1 Using reporting threshold: 0.0 The following cases will be compared: [] No comparable netCDF files were found in the provided directories. Directory 1 is 1db1e01971bca05b2e95037f97c94aae0a827a50 Directory 2 is e0ffe41f4e282a8f1686d43a2d7c881327408fe1 Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs'] ================================================ arm ================================================ >No differences detected by the linux diff in arm_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case arm.<<< ===================================================================================================== ================================================ cobra ================================================ >No differences detected by the linux diff in cobra_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case cobra.<<< ===================================================================================================== ================================================ gabls3 ================================================ >No differences detected by the linux diff in gabls3_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case gabls3.<<< ===================================================================================================== ================================================ mpace_b ================================================ >No differences detected by the linux diff in mpace_b_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case mpace_b.<<< ===================================================================================================== ================================================ rico_silhs ================================================ >No differences detected by the linux diff in rico_silhs_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case rico_silhs.<<< ===================================================================================================== SUMMARY: Linux diff did not detect any differences in the compared files. Pass: 5 cases ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs'] Fail: 0 cases [] Directory 1 is 4aa411aa309abec014934f1589d435a83a9a4bec Directory 2 is 1db1e01971bca05b2e95037f97c94aae0a827a50 Using reporting threshold: 0.0 The following cases will be compared: [] No comparable netCDF files were found in the provided directories. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git Output Save Mode: all Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -gpu openacc -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm.py -multicol 4 arm', '\npython run_scripts/run_scm.py -override l_lh_straight_mc=true -multicol 4 rico_silhs', '\npython run_scripts/run_scm.py -multicol 4 cobra', '\npython run_scripts/run_scm.py -multicol 4 mpace_b', '\npython run_scripts/run_scm.py -multicol 4 gabls3'] Diffing command: run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: 1db1e01971bca05b2e95037f97c94aae0a827a50 Parsing message from commit: 4aa411aa309abec014934f1589d435a83a9a4bec Checking Commit: 1db1e01971bca05b2e95037f97c94aae0a827a50 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 4aa411aa309abec014934f1589d435a83a9a4bec Running: final commit to check, not labelled BIT_CHANGING Checking out 4aa411aa309abec014934f1589d435a83a9a4bec Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm.py -multicol 4 arm' Running: 'python run_scripts/run_scm.py -override l_lh_straight_mc=true -multicol 4 rico_silhs' Running: 'python run_scripts/run_scm.py -multicol 4 cobra' Running: 'python run_scripts/run_scm.py -multicol 4 mpace_b' Running: 'python run_scripts/run_scm.py -multicol 4 gabls3' Checking out e0ffe41f4e282a8f1686d43a2d7c881327408fe1 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm.py -multicol 4 arm' Running: 'python run_scripts/run_scm.py -override l_lh_straight_mc=true -multicol 4 rico_silhs' Running: 'python run_scripts/run_scm.py -multicol 4 cobra' Running: 'python run_scripts/run_scm.py -multicol 4 mpace_b' Running: 'python run_scripts/run_scm.py -multicol 4 gabls3' Diffing: 'run_scripts/run_bindiff_all.py 4aa411aa309abec014934f1589d435a83a9a4bec e0ffe41f4e282a8f1686d43a2d7c881327408fe1' ISSUE WITH COMMIT DETECTED: 4aa411aa309abec014934f1589d435a83a9a4bec differs from e0ffe41f4e282a8f1686d43a2d7c881327408fe1 Finding all BIT_CHANGING commits in range: e0ffe41f4e282a8f1686d43a2d7c881327408fe1...4aa411aa309abec014934f1589d435a83a9a4bec Checking out 1db1e01971bca05b2e95037f97c94aae0a827a50 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm.py -multicol 4 arm' Running: 'python run_scripts/run_scm.py -override l_lh_straight_mc=true -multicol 4 rico_silhs' Running: 'python run_scripts/run_scm.py -multicol 4 cobra' Running: 'python run_scripts/run_scm.py -multicol 4 mpace_b' Running: 'python run_scripts/run_scm.py -multicol 4 gabls3' Output from e0ffe41f4e282a8f1686d43a2d7c881327408fe1 already saved Diffing: 'run_scripts/run_bindiff_all.py 1db1e01971bca05b2e95037f97c94aae0a827a50 e0ffe41f4e282a8f1686d43a2d7c881327408fe1' Output from 4aa411aa309abec014934f1589d435a83a9a4bec already saved Output from 1db1e01971bca05b2e95037f97c94aae0a827a50 already saved Diffing: 'run_scripts/run_bindiff_all.py 4aa411aa309abec014934f1589d435a83a9a4bec 1db1e01971bca05b2e95037f97c94aae0a827a50' Found: 4aa411aa309abec014934f1589d435a83a9a4bec =============================== Test Results =============================== Commit Range Checked = e0ffe41f4e282a8f1686d43a2d7c881327408fe1...4aa411aa309abec014934f1589d435a83a9a4bec New Unresolved Commits: 4aa411aa309abec014934f1589d435a83a9a4bec No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): 4aa411aa309abec014934f1589d435a83a9a4bec =============================== Updating Config File =============================== Saving into UnresolvedCommits: 4aa411aa309abec014934f1589d435a83a9a4bec Saving into BaselineCommit: 4aa411aa309abec014934f1589d435a83a9a4bec =============================== Cleanup =============================== Not removing any generated output. RENAMING 4aa411aa309abec014934f1589d435a83a9a4bec to latest_revision_validated_4aa411aa309abec014934f1589d435a83a9a4bec ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): 4aa411aa309abec014934f1589d435a83a9a4bec Exiting with code: 1 [Pipeline] } Lock released on resource [Resource: GPU_built-in] [Pipeline] // lock [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE