Started by an SCM change Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on mitch in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 1db1e01971bca05b2e95037f97c94aae0a827a50 (refs/remotes/origin/master) Commit message: "Improve Dash workflows and broker services (#1342)" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 1db1e01971bca05b2e95037f97c94aae0a827a50 # timeout=10 > git rev-list --no-walk e0ffe41f4e282a8f1686d43a2d7c881327408fe1 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] lock Trying to acquire lock on [Resource: GPU_mitch] The resource [GPU_mitch] is locked by build clubb_nvhpc_gpu_column_mirror_test #164 #164 since Aug 21, 2026, 3:07 AM. [Resource: GPU_mitch] is not free, waiting for execution ... [Required resources: [GPU_mitch]] added into queue at position 0 Lock acquired on [Resource: GPU_mitch] [Pipeline] { [Pipeline] sh + ulimit -s 8388608 + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config CMake Warning: Manually-specified variables were not used by the project: NetCDF_C_INCLUDE_DIR NetCDF_C_LIBRARY NetCDF_Fortran_INCLUDE_DIR NetCDF_Fortran_LIBRARY Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 841, in <module> main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 812, in main clubb_input_namelist = create_case_namelist_file( File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 465, in create_case_namelist_file clubb_in = apply_namelist_overrides(args, clubb_in, model_file, output_dir_abs) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 356, in apply_namelist_overrides clubb_in = override_value(args.override, clubb_in) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 251, in override_value raise ValueError( ValueError: Override setting 'lh_straight_mc' is not present in the selected namelists create_case_namelist failed (exit 1). Command was: /usr/bin/python /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py -out_dir /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/output -multicol 4 -override lh_straight_mc=true arm Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 841, in <module> main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 812, in main clubb_input_namelist = create_case_namelist_file( File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 465, in create_case_namelist_file clubb_in = apply_namelist_overrides(args, clubb_in, model_file, output_dir_abs) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 356, in apply_namelist_overrides clubb_in = override_value(args.override, clubb_in) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 251, in override_value raise ValueError( ValueError: Override setting 'lh_straight_mc' is not present in the selected namelists create_case_namelist failed (exit 1). Command was: /usr/bin/python /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py -out_dir /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/output -multicol 4 -override lh_straight_mc=true rico_silhs Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 841, in <module> main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 812, in main clubb_input_namelist = create_case_namelist_file( File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 465, in create_case_namelist_file clubb_in = apply_namelist_overrides(args, clubb_in, model_file, output_dir_abs) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 356, in apply_namelist_overrides clubb_in = override_value(args.override, clubb_in) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 251, in override_value raise ValueError( ValueError: Override setting 'lh_straight_mc' is not present in the selected namelists create_case_namelist failed (exit 1). Command was: /usr/bin/python /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py -out_dir /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/output -multicol 4 -override lh_straight_mc=true cobra Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 841, in <module> main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 812, in main clubb_input_namelist = create_case_namelist_file( File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 465, in create_case_namelist_file clubb_in = apply_namelist_overrides(args, clubb_in, model_file, output_dir_abs) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 356, in apply_namelist_overrides clubb_in = override_value(args.override, clubb_in) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 251, in override_value raise ValueError( ValueError: Override setting 'lh_straight_mc' is not present in the selected namelists create_case_namelist failed (exit 1). Command was: /usr/bin/python /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py -out_dir /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/output -multicol 4 -override lh_straight_mc=true mpace_b Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 841, in <module> main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 812, in main clubb_input_namelist = create_case_namelist_file( File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 465, in create_case_namelist_file clubb_in = apply_namelist_overrides(args, clubb_in, model_file, output_dir_abs) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 356, in apply_namelist_overrides clubb_in = override_value(args.override, clubb_in) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py", line 251, in override_value raise ValueError( ValueError: Override setting 'lh_straight_mc' is not present in the selected namelists create_case_namelist failed (exit 1). Command was: /usr/bin/python /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../utilities/create_case_namelist.py -out_dir /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/output -multicol 4 -override lh_straight_mc=true gabls3 Directory 1 is 1db1e01971bca05b2e95037f97c94aae0a827a50 Directory 2 is e0ffe41f4e282a8f1686d43a2d7c881327408fe1 Using reporting threshold: 0.0 The following cases will be compared: [] No comparable netCDF files were found in the provided directories. Directory 1 is 1db1e01971bca05b2e95037f97c94aae0a827a50 Directory 2 is e0ffe41f4e282a8f1686d43a2d7c881327408fe1 Using reporting threshold: 0.0 The following cases will be compared: [] No comparable netCDF files were found in the provided directories. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git Output Save Mode: all Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -gpu openacc -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 arm', '\npython run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 rico_silhs', '\npython run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 cobra', '\npython run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 mpace_b', '\npython run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 gabls3'] Diffing command: run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: 1db1e01971bca05b2e95037f97c94aae0a827a50 Checking Commit: 1db1e01971bca05b2e95037f97c94aae0a827a50 Running: final commit to check, not labelled BIT_CHANGING Checking out 1db1e01971bca05b2e95037f97c94aae0a827a50 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 arm' Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 rico_silhs' Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 cobra' Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 mpace_b' Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 gabls3' Checking out e0ffe41f4e282a8f1686d43a2d7c881327408fe1 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 arm' Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 rico_silhs' Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 cobra' Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 mpace_b' Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 gabls3' Diffing: 'run_scripts/run_bindiff_all.py 1db1e01971bca05b2e95037f97c94aae0a827a50 e0ffe41f4e282a8f1686d43a2d7c881327408fe1' ISSUE WITH COMMIT DETECTED: 1db1e01971bca05b2e95037f97c94aae0a827a50 differs from e0ffe41f4e282a8f1686d43a2d7c881327408fe1 Finding all BIT_CHANGING commits in range: e0ffe41f4e282a8f1686d43a2d7c881327408fe1...1db1e01971bca05b2e95037f97c94aae0a827a50 Output from 1db1e01971bca05b2e95037f97c94aae0a827a50 already saved Output from e0ffe41f4e282a8f1686d43a2d7c881327408fe1 already saved Diffing: 'run_scripts/run_bindiff_all.py 1db1e01971bca05b2e95037f97c94aae0a827a50 e0ffe41f4e282a8f1686d43a2d7c881327408fe1' Found: 1db1e01971bca05b2e95037f97c94aae0a827a50 =============================== Test Results =============================== Commit Range Checked = e0ffe41f4e282a8f1686d43a2d7c881327408fe1...1db1e01971bca05b2e95037f97c94aae0a827a50 New Unresolved Commits: 1db1e01971bca05b2e95037f97c94aae0a827a50 No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): 1db1e01971bca05b2e95037f97c94aae0a827a50 =============================== Updating Config File =============================== Saving into UnresolvedCommits: 1db1e01971bca05b2e95037f97c94aae0a827a50 Saving into BaselineCommit: 1db1e01971bca05b2e95037f97c94aae0a827a50 =============================== Cleanup =============================== Not removing any generated output. RENAMING 1db1e01971bca05b2e95037f97c94aae0a827a50 to latest_revision_validated_1db1e01971bca05b2e95037f97c94aae0a827a50 ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): 1db1e01971bca05b2e95037f97c94aae0a827a50 Exiting with code: 1 [Pipeline] } Lock released on resource [Resource: GPU_mitch] [Pipeline] // lock [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE