Started by an SCM change Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on mitch in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 7c083496c42caa1b7d18c781134f0cc18ae94748 (refs/remotes/origin/master) Commit message: "Building varying flags bindiff into run_bindiff_all.py, this just makes sense and helps fix the varying flags BFB test" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 7c083496c42caa1b7d18c781134f0cc18ae94748 # timeout=10 > git rev-list --no-walk 955aa780e3a47b6accf7af68d85f76ad53baff39 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] lock Trying to acquire lock on [Resource: GPU_mitch] Resource [GPU_mitch] did not exist. Created. Lock acquired on [Resource: GPU_mitch] [Pipeline] { [Pipeline] sh + ulimit -s 8388608 + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config CMake Warning: Manually-specified variables were not used by the project: NetCDF_C_INCLUDE_DIR NetCDF_C_LIBRARY NetCDF_Fortran_INCLUDE_DIR NetCDF_Fortran_LIBRARY Directory 1 is 7c083496c42caa1b7d18c781134f0cc18ae94748 Directory 2 is 955aa780e3a47b6accf7af68d85f76ad53baff39 Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs'] ================================================ arm ================================================ >No differences detected by the linux diff in arm_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case arm.<<< ===================================================================================================== ================================================ cobra ================================================ >No differences detected by the linux diff in cobra_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case cobra.<<< ===================================================================================================== ================================================ gabls3 ================================================ >No differences detected by the linux diff in gabls3_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case gabls3.<<< ===================================================================================================== ================================================ mpace_b ================================================ >No differences detected by the linux diff in mpace_b_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case mpace_b.<<< ===================================================================================================== ================================================ rico_silhs ================================================ >No differences detected by the linux diff in rico_silhs_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case rico_silhs.<<< ===================================================================================================== SUMMARY: Linux diff did not detect any differences in the compared files. Pass: 5 cases ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs'] Fail: 0 cases [] =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git Output Save Mode: all Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -gpu openacc -debug', '\nrm -rf output', '\nmkdir output', "\nsed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in", '\npython run_scripts/run_scm.py -multicol 4 arm', '\npython run_scripts/run_scm.py -multicol 4 rico_silhs', '\npython run_scripts/run_scm.py -multicol 4 cobra', '\npython run_scripts/run_scm.py -multicol 4 mpace_b', '\npython run_scripts/run_scm.py -multicol 4 gabls3'] Diffing command: run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: 1ba1f81f6b41e649dfe497947dc4c22c69f38f6c Parsing message from commit: 0da14a07a2ef02d9517c80c18d0a3a285dc08d04 Parsing message from commit: e73f5d17f344ccfbf4741d978a7e0dd60a06fb25 Parsing message from commit: 1fa8fdebc019e2807e0031f7233ef85243f80ad6 Parsing message from commit: 7c083496c42caa1b7d18c781134f0cc18ae94748 Checking Commit: 1ba1f81f6b41e649dfe497947dc4c22c69f38f6c Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 0da14a07a2ef02d9517c80c18d0a3a285dc08d04 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: e73f5d17f344ccfbf4741d978a7e0dd60a06fb25 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 1fa8fdebc019e2807e0031f7233ef85243f80ad6 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 7c083496c42caa1b7d18c781134f0cc18ae94748 Running: final commit to check, not labelled BIT_CHANGING Checking out 7c083496c42caa1b7d18c781134f0cc18ae94748 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'python run_scripts/run_scm.py -multicol 4 arm' Running: 'python run_scripts/run_scm.py -multicol 4 rico_silhs' Running: 'python run_scripts/run_scm.py -multicol 4 cobra' Running: 'python run_scripts/run_scm.py -multicol 4 mpace_b' Running: 'python run_scripts/run_scm.py -multicol 4 gabls3' Checking out 955aa780e3a47b6accf7af68d85f76ad53baff39 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'python run_scripts/run_scm.py -multicol 4 arm' Running: 'python run_scripts/run_scm.py -multicol 4 rico_silhs' Running: 'python run_scripts/run_scm.py -multicol 4 cobra' Running: 'python run_scripts/run_scm.py -multicol 4 mpace_b' Running: 'python run_scripts/run_scm.py -multicol 4 gabls3' Diffing: 'run_scripts/run_bindiff_all.py 7c083496c42caa1b7d18c781134f0cc18ae94748 955aa780e3a47b6accf7af68d85f76ad53baff39' =============================== Test Results =============================== Commit Range Checked = 955aa780e3a47b6accf7af68d85f76ad53baff39...7c083496c42caa1b7d18c781134f0cc18ae94748 No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 7c083496c42caa1b7d18c781134f0cc18ae94748 =============================== Cleanup =============================== Not removing any generated output. RENAMING 7c083496c42caa1b7d18c781134f0cc18ae94748 to latest_revision_validated_7c083496c42caa1b7d18c781134f0cc18ae94748 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } Lock released on resource [Resource: GPU_mitch] [Pipeline] // lock [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS