Started by user Gunther Huebler Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on nelson in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision abccbb5bc06909c50b6645028674a3461f0bf0ab (refs/remotes/origin/master) Commit message: "Fixing python api and python/jax driver. Also fixing bug that caused non-BFBness in stats outputs (only upwp_cl/vpwp_cl) when using l_predict_upwp_vpwp=.false., and adding ulimit -s 8388608 to fix GPU test (though it's unclear why exactly we need this all of a sudden for this test). RESOLVED:643d128a5613019595aecd643f1028e937ad4b76 RESOLVED:f146255f50732c445ccbd012ca45888a9ce44d0b" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f abccbb5bc06909c50b6645028674a3461f0bf0ab # timeout=10 > git rev-list --no-walk f146255f50732c445ccbd012ca45888a9ce44d0b # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] lock Trying to acquire lock on [Resource: GPU_nelson] Resource [GPU_nelson] did not exist. Created. Lock acquired on [Resource: GPU_nelson] [Pipeline] { [Pipeline] sh + ulimit -s 8388608 + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config CMake Warning: Manually-specified variables were not used by the project: NetCDF_C_INCLUDE_DIR NetCDF_C_LIBRARY NetCDF_Fortran_INCLUDE_DIR NetCDF_Fortran_LIBRARY Aborted by Gunther Huebler Sending interrupt signal to process Terminated Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_scm.py", line 528, in <module> main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_scm.py", line 522, in main result = run_case(run_cmd, run_cwd, args.case_name, clubb_input_namelist, output_dir, run_env) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_scm.py", line 61, in run_case print(line, end="", flush=True) BrokenPipeError: [Errno 32] Broken pipe Exception ignored in: <_io.TextIOWrapper name='<stdout>' mode='w' encoding='utf-8'> BrokenPipeError: [Errno 32] Broken pipe script returned exit code 143 [Pipeline] } Lock released on resource [Resource: GPU_nelson] Click here to forcibly terminate running steps [Pipeline] // lock [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: 8a861504-67b8-47ed-b1a5-c7c8c59a71d7 Finished: ABORTED